-
1
-
-
18744382506
-
ProtTest: selection of best-fit models of protein evolution
-
Abascal F., Zardoya R., Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 2005, 21:2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
79955444679
-
Molecular evolution of Toll-like receptor multigene family in birds
-
Alcaide M., Edwards S.V. Molecular evolution of Toll-like receptor multigene family in birds. Mol Biol Evol 2011, 28:1703-1715.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 1703-1715
-
-
Alcaide, M.1
Edwards, S.V.2
-
3
-
-
33847155026
-
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins
-
Bagos P.G., Liakopoulos T.D., Hamodrakas S.J. Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins. BMC Bioinformatics 2006, 7:189.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 189
-
-
Bagos, P.G.1
Liakopoulos, T.D.2
Hamodrakas, S.J.3
-
4
-
-
33845797037
-
Structural characterization and expression analysis of Toll-like receptor 2 gene from catfish
-
Baoprasertkul P., Peatman E., Abernathy J., Liu Z. Structural characterization and expression analysis of Toll-like receptor 2 gene from catfish. Fish Shellfish Immunol 2007, 22:418-426.
-
(2007)
Fish Shellfish Immunol
, vol.22
, pp. 418-426
-
-
Baoprasertkul, P.1
Peatman, E.2
Abernathy, J.3
Liu, Z.4
-
5
-
-
68249118173
-
Evolutionary dynamics of human Toll-like receptors and their different contributions to host defence
-
Barreiro L.B., Ben-Ali M., Quach H., Laval G., Patin E., Pickrell J.K., Bouchier C., Tichit M., Neyrolles O., Gicquel B., Kidd J.R., Kidd K.K., Alcaïs A., Ragimbeau J., Pellegrini S., Abel L., Casanova J.L., Quintana-Murci L. Evolutionary dynamics of human Toll-like receptors and their different contributions to host defence. PloS Genet 2009, 5:e1000562.
-
(2009)
PloS Genet
, vol.5
-
-
Barreiro, L.B.1
Ben-Ali, M.2
Quach, H.3
Laval, G.4
Patin, E.5
Pickrell, J.K.6
Bouchier, C.7
Tichit, M.8
Neyrolles, O.9
Gicquel, B.10
Kidd, J.R.11
Kidd, K.K.12
Alcaïs, A.13
Ragimbeau, J.14
Pellegrini, S.15
Abel, L.16
Casanova, J.L.17
Quintana-Murci, L.18
-
6
-
-
23344431978
-
The molecular structure of the Toll-like receptor 3 ligand-binding domain
-
Bell J., Botos I., Hall P.R., Askins J., Shiloach J., Segal D.M., Davies D.R. The molecular structure of the Toll-like receptor 3 ligand-binding domain. Proc Natl Acad Sci U S A 2005, 102:10976-10980.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 10976-10980
-
-
Bell, J.1
Botos, I.2
Hall, P.R.3
Askins, J.4
Shiloach, J.5
Segal, D.M.6
Davies, D.R.7
-
7
-
-
0003633496
-
-
Reidel, Dordrecht
-
Berendsen H.J.C., Postma J.P.M., van Gusteren W.F., Hermans J. Interaction models for water in relation to protein hydration 1981, Reidel, Dordrecht, pp. 331-342.
-
(1981)
Interaction models for water in relation to protein hydration
, pp. 331-342
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
van Gusteren, W.F.3
Hermans, J.4
-
8
-
-
38349019483
-
Evidence for positive selection in the TLR9 gene of teleosts
-
Chen J.S., Wang T.Y., Tzeng T.D., Wang C.Y., Wang D. Evidence for positive selection in the TLR9 gene of teleosts. Fish Shellfish Immunol 2008, 24:234-242.
-
(2008)
Fish Shellfish Immunol
, vol.24
, pp. 234-242
-
-
Chen, J.S.1
Wang, T.Y.2
Tzeng, T.D.3
Wang, C.Y.4
Wang, D.5
-
9
-
-
84871612123
-
Toll-like receptors: an overview from invertebrates to vertebrates
-
Coscia M.R., Giacomelli S., Oreste U. Toll-like receptors: an overview from invertebrates to vertebrates. Inv Surv 2011, 8:210-226.
-
(2011)
Inv Surv
, vol.8
, pp. 210-226
-
-
Coscia, M.R.1
Giacomelli, S.2
Oreste, U.3
-
10
-
-
33846818777
-
A combined empirical and mechanistic codon model
-
Doron-Faigenboim A., Pupko T. A combined empirical and mechanistic codon model. Mol Biol Evol 2006, 24:388-397.
-
(2006)
Mol Biol Evol
, vol.24
, pp. 388-397
-
-
Doron-Faigenboim, A.1
Pupko, T.2
-
12
-
-
75549090603
-
The PFAM protein families database
-
Finn R.D., Mistry J., Tate J., Coggill P., Heger A., Pollington J.E., Gavin O.L., Gunesekaran P., Ceric G., Forslund K., Holm L., Sonnhammer E.L., Eddy S.R., Bateman A. The PFAM protein families database. Nucleic Acids Res 2010, 38:211-222.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 211-222
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunesekaran, P.8
Ceric, G.9
Forslund, K.10
Holm, L.11
Sonnhammer, E.L.12
Eddy, S.R.13
Bateman, A.14
-
13
-
-
27144505097
-
Protein identification and analysis tools on the ExPASy server
-
Humana Press, J.M. Walker (Ed.)
-
Gasteiger E., Hoogland C., Gattiker A., Duvaud S., Wilkins M.R., Appel R.D., Bairoch A. Protein identification and analysis tools on the ExPASy server. The proteomics protocols handbook 2005, 571-607. Humana Press. J.M. Walker (Ed.).
-
(2005)
The proteomics protocols handbook
, pp. 571-607
-
-
Gasteiger, E.1
Hoogland, C.2
Gattiker, A.3
Duvaud, S.4
Wilkins, M.R.5
Appel, R.D.6
Bairoch, A.7
-
14
-
-
34548459868
-
Structure and function of Toll receptors and their ligands
-
Gay N.J., Gangloff M. Structure and function of Toll receptors and their ligands. Annu Rev Biochem 2007, 76:141-165.
-
(2007)
Annu Rev Biochem
, vol.76
, pp. 141-165
-
-
Gay, N.J.1
Gangloff, M.2
-
15
-
-
77958589003
-
Molecular modeling-based evaluation of hTLR10 and identification of potential ligands in Toll-like receptor signaling
-
Govindaraj R.G., Manavalan B., Lee G., Choi A. Molecular modeling-based evaluation of hTLR10 and identification of potential ligands in Toll-like receptor signaling. PloS ONE 2010, 5:e12713.
-
(2010)
PloS ONE
, vol.5
-
-
Govindaraj, R.G.1
Manavalan, B.2
Lee, G.3
Choi, A.4
-
16
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52:696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
17
-
-
2442514227
-
Characterization of gene structure and expression of two toll-like receptors from Japanese flounder, Paralichthys olivaceus
-
Hirono I., Takami M., Miyata M., Miyazaki T., Han H.J., Takano T., Endo M., Aoki T. Characterization of gene structure and expression of two toll-like receptors from Japanese flounder, Paralichthys olivaceus. Immunogenetics 2004, 56:38-46.
-
(2004)
Immunogenetics
, vol.56
, pp. 38-46
-
-
Hirono, I.1
Takami, M.2
Miyata, M.3
Miyazaki, T.4
Han, H.J.5
Takano, T.6
Endo, M.7
Aoki, T.8
-
18
-
-
0000207681
-
Tmbase - a database of membrane spanning proteins segments
-
Hoffmann K., Stoffel W. Tmbase - a database of membrane spanning proteins segments. Biol Chem Hoppe-Seyler 1993, 374:166.
-
(1993)
Biol Chem Hoppe-Seyler
, vol.374
, pp. 166
-
-
Hoffmann, K.1
Stoffel, W.2
-
19
-
-
57049173069
-
Molecular evolution of bovine Toll-like receptor 2 suggests substitutions of functional relevance
-
Jann O.C., Werling D., Chang J.S., Haig D., Glass E.J. Molecular evolution of bovine Toll-like receptor 2 suggests substitutions of functional relevance. BMC Evol Biol 2008, 8:288.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 288
-
-
Jann, O.C.1
Werling, D.2
Chang, J.S.3
Haig, D.4
Glass, E.J.5
-
20
-
-
0346849669
-
Toll-like receptor gene family and TIR-domain adapters in Danio rerio
-
Jault C., Pichon L., Cluba J. Toll-like receptor gene family and TIR-domain adapters in Danio rerio. Mol Immunol 2004, 40:759-771.
-
(2004)
Mol Immunol
, vol.40
, pp. 759-771
-
-
Jault, C.1
Pichon, L.2
Cluba, J.3
-
21
-
-
34548608447
-
Crystal structure of the TLR1-TLR2 heterodimer induced by binding of the tri-acetylated lipopeptide
-
Jin M.S., Kim S.E., Heo J.Y., Lee M.E., Kim H.M., Palk S., Lee H., Lee J. Crystal structure of the TLR1-TLR2 heterodimer induced by binding of the tri-acetylated lipopeptide. Cell 2008, 130:1071-1082.
-
(2008)
Cell
, vol.130
, pp. 1071-1082
-
-
Jin, M.S.1
Kim, S.E.2
Heo, J.Y.3
Lee, M.E.4
Kim, H.M.5
Palk, S.6
Lee, H.7
Lee, J.8
-
22
-
-
71749118913
-
Recognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer
-
Kang J.Y., Jin M.S., Youn S.J., Ryu Y.H., Mah S., Lee H., Palk S.G., Lee J.O. Recognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer. Immunity 2009, 31:873-884.
-
(2009)
Immunity
, vol.31
, pp. 873-884
-
-
Kang, J.Y.1
Jin, M.S.2
Youn, S.J.3
Ryu, Y.H.4
Mah, S.5
Lee, H.6
Palk, S.G.7
Lee, J.O.8
-
23
-
-
63849246525
-
Protein structure prediction on the web: a case study using the Phyre server
-
Kelley L.A., Sternberg M.J.E. Protein structure prediction on the web: a case study using the Phyre server. Nat Protocols 2009, 4:363-371.
-
(2009)
Nat Protocols
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.E.2
-
24
-
-
78650698252
-
Molecular cloning, characterization and expression analysis of TLR9, MyD88 and TRAF6 genes in common carp Cyprinus carpio
-
Kongchum P., Hallerman E.M., Hulata G., David L., Palti Y. Molecular cloning, characterization and expression analysis of TLR9, MyD88 and TRAF6 genes in common carp Cyprinus carpio. Fish Shellfish Immunol 2011, 30:361-371.
-
(2011)
Fish Shellfish Immunol
, vol.30
, pp. 361-371
-
-
Kongchum, P.1
Hallerman, E.M.2
Hulata, G.3
David, L.4
Palti, Y.5
-
25
-
-
17744396121
-
Not so different after all: a comparison of methods for detecting amino acid sites under selection
-
Kosakovsky Pond S.L., Frost S.D. Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 2005, 22:1208-1222.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1208-1222
-
-
Kosakovsky Pond, S.L.1
Frost, S.D.2
-
26
-
-
37749004229
-
Structure-function relationships of Toll-like receptor domains through homology modelling and molecular dynamics
-
Kubarenko A., Frank M., Weber A.N.R. Structure-function relationships of Toll-like receptor domains through homology modelling and molecular dynamics. Biochem Soc Trans 2007, 35:1515-1518.
-
(2007)
Biochem Soc Trans
, vol.35
, pp. 1515-1518
-
-
Kubarenko, A.1
Frank, M.2
Weber, A.N.R.3
-
27
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J., Heggings D.G. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Heggings, D.G.13
-
28
-
-
0000243829
-
PROCHECK: a program to check the stereochemical quality of protein structure
-
Laskowski R.A., MacArthur M.W., Moss M.D., Thorton J.M. PROCHECK: a program to check the stereochemical quality of protein structure. J Appl Crystallogr 1993, 26:283-291.
-
(1993)
J Appl Crystallogr
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, M.D.3
Thorton, J.M.4
-
29
-
-
34548608447
-
Crystal structure of the TLR1-TLR2 heterodimer induced by binding of a tri-acylated lipopeptide
-
Lee J.O., Jin M.S., Kim S.E., Heo J.Y. Crystal structure of the TLR1-TLR2 heterodimer induced by binding of a tri-acylated lipopeptide. Cell 2007, 130:1071-1082.
-
(2007)
Cell
, vol.130
, pp. 1071-1082
-
-
Lee, J.O.1
Jin, M.S.2
Kim, S.E.3
Heo, J.Y.4
-
30
-
-
58149194624
-
SMART 6: recent updates and new developments
-
Letunic I., Doerks T., Bork P. SMART 6: recent updates and new developments. Nucleic Acids Res 2009, 37:229-232.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 229-232
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
31
-
-
42349090335
-
Structural basis of Toll-like receptor 3 signaling with double-stranded RNA
-
Liu L., Botos I., Wang Y., Leonard J.N., Shiloach J., Segal D.M., Davies D.R. Structural basis of Toll-like receptor 3 signaling with double-stranded RNA. Science 2008, 320:379-381.
-
(2008)
Science
, vol.320
, pp. 379-381
-
-
Liu, L.1
Botos, I.2
Wang, Y.3
Leonard, J.N.4
Shiloach, J.5
Segal, D.M.6
Davies, D.R.7
-
32
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
-
Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 2001, 25:402-408.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
33
-
-
34347209992
-
Comparative sequence analysis of leucine-rich repeats LRR, within vertebrate toll-like receptors
-
Matsushima N., Tanaka T., Enkhbayar P., Mikami T., Taga M., Yamada K., Kuroki Y. Comparative sequence analysis of leucine-rich repeats LRR, within vertebrate toll-like receptors. BMC Genomics 2007, 8:124.
-
(2007)
BMC Genomics
, vol.8
, pp. 124
-
-
Matsushima, N.1
Tanaka, T.2
Enkhbayar, P.3
Mikami, T.4
Taga, M.5
Yamada, K.6
Kuroki, Y.7
-
34
-
-
0347480221
-
Expression analysis of the Toll-like receptor and TIR domain adaptor families of zebrafish
-
Meijer A.H., Gabby Krens S.F., Medina Rodriguez I.A., He S., Bitter W., Snaar-Jagalska B.E., Spaink H.P. Expression analysis of the Toll-like receptor and TIR domain adaptor families of zebrafish. Mol Immunol 2004, 40:773-783.
-
(2004)
Mol Immunol
, vol.40
, pp. 773-783
-
-
Meijer, A.H.1
Gabby Krens, S.F.2
Medina Rodriguez, I.A.3
He, S.4
Bitter, W.5
Snaar-Jagalska, B.E.6
Spaink, H.P.7
-
35
-
-
45549086115
-
The crystal structure of the human Toll-like receptor 10 cytoplasmic domain reveals a putative signaling dimer
-
Nyman T., Stenmark P., Flodin S., Johansson I., Hammarsrtöm M., Nordlund P. The crystal structure of the human Toll-like receptor 10 cytoplasmic domain reveals a putative signaling dimer. J Biol Chem 2008, 283:11861-11865.
-
(2008)
J Biol Chem
, vol.283
, pp. 11861-11865
-
-
Nyman, T.1
Stenmark, P.2
Flodin, S.3
Johansson, I.4
Hammarsrtöm, M.5
Nordlund, P.6
-
36
-
-
34247566510
-
The family of five: TIR-domain-containing adaptors in Toll-like receptor signalling
-
O'Neill L.A., Bowie A.G. The family of five: TIR-domain-containing adaptors in Toll-like receptor signalling. Nat Rev Immunol 2007, 7:353-364.
-
(2007)
Nat Rev Immunol
, vol.7
, pp. 353-364
-
-
O'Neill, L.A.1
Bowie, A.G.2
-
37
-
-
79952186298
-
MicroRNAs: the fine-tuners of Toll-like receptor signalling
-
O'Neill L.A., Sheedy F.J., McCoy C.E. MicroRNAs: the fine-tuners of Toll-like receptor signalling. Nat Rev Immunol 2011, 11:163-175.
-
(2011)
Nat Rev Immunol
, vol.11
, pp. 163-175
-
-
O'Neill, L.A.1
Sheedy, F.J.2
McCoy, C.E.3
-
38
-
-
0037303847
-
Prediction of the prototype of human Toll-like receptor gene family from the pufferfish, Fugu rubripes, genome
-
Oshiumi H., Tsujita T., Shida K., Matsumoto M., Ikeo K., Seya T. Prediction of the prototype of human Toll-like receptor gene family from the pufferfish, Fugu rubripes, genome. Immunogenetics 2003, 54:791-800.
-
(2003)
Immunogenetics
, vol.54
, pp. 791-800
-
-
Oshiumi, H.1
Tsujita, T.2
Shida, K.3
Matsumoto, M.4
Ikeo, K.5
Seya, T.6
-
39
-
-
67349182481
-
The structural basis of lipopolysaccharide recognition by the TLR4-MD-2 complex
-
Park B.S., Song D.M., Kim H.M., Lee J.O. The structural basis of lipopolysaccharide recognition by the TLR4-MD-2 complex. Nature 2009, 458:1191-1195.
-
(2009)
Nature
, vol.458
, pp. 1191-1195
-
-
Park, B.S.1
Song, D.M.2
Kim, H.M.3
Lee, J.O.4
-
40
-
-
70450224438
-
Identification, characterization and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout Oncorhynchus mykiss
-
Patli Y., Gahr S.A., Purcell M.K., Hadidi S., Rexroad C.E., Wiens G.D. Identification, characterization and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout Oncorhynchus mykiss. Dev Comp Immunol 2010, 34:219-233.
-
(2010)
Dev Comp Immunol
, vol.34
, pp. 219-233
-
-
Patli, Y.1
Gahr, S.A.2
Purcell, M.K.3
Hadidi, S.4
Rexroad, C.E.5
Wiens, G.D.6
-
41
-
-
80455168991
-
Toll-like receptors in bony fish: from genomics to function
-
Patli Y. Toll-like receptors in bony fish: from genomics to function. Dev Comp Immunol 2011, 35:1263-1272.
-
(2011)
Dev Comp Immunol
, vol.35
, pp. 1263-1272
-
-
Patli, Y.1
-
42
-
-
17744395033
-
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
-
Pond S.L., Frost S.D. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 2005, 21:2531-2533.
-
(2005)
Bioinformatics
, vol.21
, pp. 2531-2533
-
-
Pond, S.L.1
Frost, S.D.2
-
43
-
-
77951900826
-
Evolution of recognition of ligands from Gram-positive bacteria: similarities and differences in the TLR2-mediated response between mammalian vertebrates and teleost fish
-
Ribeiro C.M.S., Hermsen T., Taverne-Thiele A.J., Savelkoul H.F.J., Wiegertjes G.F. Evolution of recognition of ligands from Gram-positive bacteria: similarities and differences in the TLR2-mediated response between mammalian vertebrates and teleost fish. J Immunol 2010, 184:2355-2368.
-
(2010)
J Immunol
, vol.184
, pp. 2355-2368
-
-
Ribeiro, C.M.S.1
Hermsen, T.2
Taverne-Thiele, A.J.3
Savelkoul, H.F.J.4
Wiegertjes, G.F.5
-
44
-
-
61449231622
-
Evolution of Lipopolysaccharide LPS, recognition and signaling: fish TLR4 does not recognize LPS and negatively regulates NF-κB activation
-
Sepulcre M.P., Alcaraz-Perez F., Lopez-Munoz A., Roja F.J., Meseguer J., Cayuela M.L., Mulero V. Evolution of Lipopolysaccharide LPS, recognition and signaling: fish TLR4 does not recognize LPS and negatively regulates NF-κB activation. J Immunol 2009, 182:1836-1845.
-
(2009)
J Immunol
, vol.182
, pp. 1836-1845
-
-
Sepulcre, M.P.1
Alcaraz-Perez, F.2
Lopez-Munoz, A.3
Roja, F.J.4
Meseguer, J.5
Cayuela, M.L.6
Mulero, V.7
-
45
-
-
34547567977
-
Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach
-
Stern A., Doron-Faigenboim A., Erez E., Martz E., Bacharach E., Pupko T. Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach. Nucleic Acids Res 2007, 35:W506-W511.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Stern, A.1
Doron-Faigenboim, A.2
Erez, E.3
Martz, E.4
Bacharach, E.5
Pupko, T.6
-
46
-
-
0031427052
-
A Shannon entropy analysis of immunoglobulin and T cell receptor
-
Stewart J.J., Lee C.Y., Ibrahim S., Watts P., Shlomchik M., Weigert M., Litwin S. A Shannon entropy analysis of immunoglobulin and T cell receptor. Mol Immunol 1997, 34:1067-1082.
-
(1997)
Mol Immunol
, vol.34
, pp. 1067-1082
-
-
Stewart, J.J.1
Lee, C.Y.2
Ibrahim, S.3
Watts, P.4
Shlomchik, M.5
Weigert, M.6
Litwin, S.7
-
47
-
-
77953238536
-
Evidence of molecular Toll-like receptor mechanisms in teleost
-
Takano T., Hwang S.D., Kondo H., Hirono I., Aoki T., Sano M. Evidence of molecular Toll-like receptor mechanisms in teleost. Fish Pathol 2010, 45:1-16.
-
(2010)
Fish Pathol
, vol.45
, pp. 1-16
-
-
Takano, T.1
Hwang, S.D.2
Kondo, H.3
Hirono, I.4
Aoki, T.5
Sano, M.6
-
48
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
49
-
-
0031574072
-
The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997, 25:4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
50
-
-
27344454932
-
GROMACS: fast, flexible, and free
-
Van Der Spoel D., Lindahl E., Hess B., Groenhof G., Mark A.E., Berendsen H.J. GROMACS: fast, flexible, and free. J Comput Chem 2005, 26:1701-1718.
-
(2005)
J Comput Chem
, vol.26
, pp. 1701-1718
-
-
Van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.6
-
51
-
-
78651467836
-
A leucine-rich repeat assembly approach for homology modeling of human TLR5-10 and mouse TLR11-13 ectodomains
-
Wei T., Gong J., Rossle S.C., Jamitzky F., Heckl W.M., Stark R.W. A leucine-rich repeat assembly approach for homology modeling of human TLR5-10 and mouse TLR11-13 ectodomains. J Mol Model 2011, 17:27-36.
-
(2011)
J Mol Model
, vol.17
, pp. 27-36
-
-
Wei, T.1
Gong, J.2
Rossle, S.C.3
Jamitzky, F.4
Heckl, W.M.5
Stark, R.W.6
-
52
-
-
79955594675
-
Cloning and expression of Toll-like receptors 1 and 2 from a teleost fish, the orange-spotted grouper Epinephelus coioides
-
Wei Y.C., Pan T.S., Chang M.X., Huang B., Xu Z., Luo T.R., Nie P. Cloning and expression of Toll-like receptors 1 and 2 from a teleost fish, the orange-spotted grouper Epinephelus coioides. Vet Immunol Immunopathol 2011, 141:173-182.
-
(2011)
Vet Immunol Immunopathol
, vol.141
, pp. 173-182
-
-
Wei, Y.C.1
Pan, T.S.2
Chang, M.X.3
Huang, B.4
Xu, Z.5
Luo, T.R.6
Nie, P.7
-
53
-
-
23044445303
-
Crystal structure of human toll-like receptor 3 TLR3, ectodomain
-
Wilson I.A., Choe J. Crystal structure of human toll-like receptor 3 TLR3, ectodomain. Science 2005, 309:581-585.
-
(2005)
Science
, vol.309
, pp. 581-585
-
-
Wilson, I.A.1
Choe, J.2
-
54
-
-
0034597766
-
Structural basis for signal transduction by the Toll/interleukin-1 receptor domains
-
Xu Y., Tao X., Shen B., Horng T., Medzhitov R., Manley J.L., Tong L. Structural basis for signal transduction by the Toll/interleukin-1 receptor domains. Nature 2000, 408:111-115.
-
(2000)
Nature
, vol.408
, pp. 111-115
-
-
Xu, Y.1
Tao, X.2
Shen, B.3
Horng, T.4
Medzhitov, R.5
Manley, J.L.6
Tong, L.7
-
55
-
-
16344378246
-
Bayes Empirical Bayes inference of amino acid sites under positive selection
-
Yang Z., Wong W.S., Nielsen R. Bayes Empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol 2005, 22:1107-1118.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.2
Nielsen, R.3
-
56
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24:1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
|