메뉴 건너뛰기




Volumn 14, Issue , 2013, Pages

Predicting PDZ domain mediated protein interactions from structure

Author keywords

[No Author keywords available]

Indexed keywords

BINDING SPECIFICITIES; C-TERMINAL PEPTIDES; FUNCTIONAL ENRICHMENT ANALYSIS; PROTEIN INTERACTION; PROTEIN-PROTEIN INTERACTIONS; SEQUENCE SIMILARITY; STRUCTURAL INFORMATION; XENOBIOTIC METABOLISM;

EID: 84872409290     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-14-27     Document Type: Article
Times cited : (33)

References (74)
  • 1
    • 0037453510 scopus 로고    scopus 로고
    • Assembly of cell regulatory systems through protein interaction domains
    • 10.1126/science.1083653, 12702867
    • Pawson T, Nash P. Assembly of cell regulatory systems through protein interaction domains. Science 2003, 300:445-452. 10.1126/science.1083653, 12702867.
    • (2003) Science , vol.300 , pp. 445-452
    • Pawson, T.1    Nash, P.2
  • 2
    • 10444276589 scopus 로고    scopus 로고
    • Making protein interactions druggable: targeting PDZ domains
    • 10.1038/nrd1578, 15573103
    • Dev KK. Making protein interactions druggable: targeting PDZ domains. Nat Rev Drug Discov 2004, 3:1047-1056. 10.1038/nrd1578, 15573103.
    • (2004) Nat Rev Drug Discov , vol.3 , pp. 1047-1056
    • Dev, K.K.1
  • 3
    • 33646675570 scopus 로고    scopus 로고
    • Molecular biology of human papillomavirus infection and cervical cancer
    • Doorbar J. Molecular biology of human papillomavirus infection and cervical cancer. Clin Sci (Lond) 2006, 110:525-541.
    • (2006) Clin Sci (Lond) , vol.110 , pp. 525-541
    • Doorbar, J.1
  • 9
    • 51349085386 scopus 로고    scopus 로고
    • Predicting PDZ domain-peptide interactions from primary sequences
    • 10.1038/nbt.1489, 2655215, 18711339
    • Chen JR, Chang BH, Allen JE, Stiffler MA, MacBeath G. Predicting PDZ domain-peptide interactions from primary sequences. Nat Biotechnol 2008, 26:1041-1045. 10.1038/nbt.1489, 2655215, 18711339.
    • (2008) Nat Biotechnol , vol.26 , pp. 1041-1045
    • Chen, J.R.1    Chang, B.H.2    Allen, J.E.3    Stiffler, M.A.4    MacBeath, G.5
  • 10
    • 77957737014 scopus 로고    scopus 로고
    • Proteome scanning to predict PDZ domain interactions using support vector machines
    • Hui S, Bader GD. Proteome scanning to predict PDZ domain interactions using support vector machines. BMC Bioinforma 2010, 11:507.
    • (2010) BMC Bioinforma , vol.11 , pp. 507
    • Hui, S.1    Bader, G.D.2
  • 11
    • 79551614773 scopus 로고    scopus 로고
    • A regression framework incorporating quantitative and negative interaction data improves quantitative prediction of PDZ domain-peptide interaction from primary sequence
    • 10.1093/bioinformatics/btq657, 3031032, 21127034
    • Shao X, Tan CS, Voss C, Li SS, Deng N, Bader GD. A regression framework incorporating quantitative and negative interaction data improves quantitative prediction of PDZ domain-peptide interaction from primary sequence. Bioinformatics 2011, 27:383-390. 10.1093/bioinformatics/btq657, 3031032, 21127034.
    • (2011) Bioinformatics , vol.27 , pp. 383-390
    • Shao, X.1    Tan, C.S.2    Voss, C.3    Li, S.S.4    Deng, N.5    Bader, G.D.6
  • 12
    • 67650281206 scopus 로고    scopus 로고
    • A machine learning based method for the prediction of G protein-coupled receptor-binding PDZ domain proteins
    • 10.1007/s10059-009-0091-2, 19533032
    • Eo HS, Kim S, Koo H, Kim W. A machine learning based method for the prediction of G protein-coupled receptor-binding PDZ domain proteins. Mol Cells 2009, 27:629-634. 10.1007/s10059-009-0091-2, 19533032.
    • (2009) Mol Cells , vol.27 , pp. 629-634
    • Eo, H.S.1    Kim, S.2    Koo, H.3    Kim, W.4
  • 13
    • 33746861956 scopus 로고    scopus 로고
    • Comparative structural analysis of the Erbin PDZ domain and the first PDZ domain of ZO-1. Insights into determinants of PDZ domain specificity
    • 10.1074/jbc.M602901200, 16737969
    • Appleton BA, Zhang Y, Wu P, Yin JP, Hunziker W, Skelton NJ, Sidhu SS, Wiesmann C. Comparative structural analysis of the Erbin PDZ domain and the first PDZ domain of ZO-1. Insights into determinants of PDZ domain specificity. J Biol Chem 2006, 281:22312-22320. 10.1074/jbc.M602901200, 16737969.
    • (2006) J Biol Chem , vol.281 , pp. 22312-22320
    • Appleton, B.A.1    Zhang, Y.2    Wu, P.3    Yin, J.P.4    Hunziker, W.5    Skelton, N.J.6    Sidhu, S.S.7    Wiesmann, C.8
  • 14
    • 0037470140 scopus 로고    scopus 로고
    • Origins of PDZ domain ligand specificity. Structure determination and mutagenesis of the Erbin PDZ domain
    • 10.1074/jbc.M209751200, 12446668
    • Skelton NJ, Koehler MF, Zobel K, Wong WL, Yeh S, Pisabarro MT, Yin JP, Lasky LA, Sidhu SS. Origins of PDZ domain ligand specificity. Structure determination and mutagenesis of the Erbin PDZ domain. J Biol Chem 2003, 278:7645-7654. 10.1074/jbc.M209751200, 12446668.
    • (2003) J Biol Chem , vol.278 , pp. 7645-7654
    • Skelton, N.J.1    Koehler, M.F.2    Zobel, K.3    Wong, W.L.4    Yeh, S.5    Pisabarro, M.T.6    Yin, J.P.7    Lasky, L.A.8    Sidhu, S.S.9
  • 15
    • 34249800674 scopus 로고    scopus 로고
    • Solution structure and backbone dynamics of the AF-6 PDZ domain/Bcr peptide complex
    • 10.1110/ps.062440607, 2206671, 17473018
    • Chen Q, Niu X, Xu Y, Wu J, Shi Y. Solution structure and backbone dynamics of the AF-6 PDZ domain/Bcr peptide complex. Protein Sci 2007, 16:1053-1062. 10.1110/ps.062440607, 2206671, 17473018.
    • (2007) Protein Sci , vol.16 , pp. 1053-1062
    • Chen, Q.1    Niu, X.2    Xu, Y.3    Wu, J.4    Shi, Y.5
  • 16
    • 77952305592 scopus 로고    scopus 로고
    • Large-scale prediction of protein-protein interactions from structures
    • Hue M, Riffle M, Vert JP, Noble WS. Large-scale prediction of protein-protein interactions from structures. BMC Bioinforma 2010, 11:144.
    • (2010) BMC Bioinforma , vol.11 , pp. 144
    • Hue, M.1    Riffle, M.2    Vert, J.P.3    Noble, W.S.4
  • 17
    • 42949092832 scopus 로고    scopus 로고
    • Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm
    • 10.1371/journal.pcbi.1000052, 2271153, 18389064
    • Sanchez IE, Beltrao P, Stricher F, Schymkowitz J, Ferkinghoff-Borg J, Rousseau F, Serrano L. Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm. PLoS Comput Biol 2008, 4:e1000052. 10.1371/journal.pcbi.1000052, 2271153, 18389064.
    • (2008) PLoS Comput Biol , vol.4
    • Sanchez, I.E.1    Beltrao, P.2    Stricher, F.3    Schymkowitz, J.4    Ferkinghoff-Borg, J.5    Rousseau, F.6    Serrano, L.7
  • 18
  • 19
    • 77956730468 scopus 로고    scopus 로고
    • Structure-based prediction of the peptide sequence space recognized by natural and synthetic PDZ domains
    • 10.1016/j.jmb.2010.07.032, 20654621
    • Smith CA, Kortemme T. Structure-based prediction of the peptide sequence space recognized by natural and synthetic PDZ domains. J Mol Biol 2010, 402:460-474. 10.1016/j.jmb.2010.07.032, 20654621.
    • (2010) J Mol Biol , vol.402 , pp. 460-474
    • Smith, C.A.1    Kortemme, T.2
  • 20
    • 79551585392 scopus 로고    scopus 로고
    • A physical model for PDZ-domain/peptide interactions
    • 10.1007/s00894-010-0725-5, 3029681, 20461427
    • Kaufmann K, Shen N, Mizoue L, Meiler J. A physical model for PDZ-domain/peptide interactions. J Mol Model 2011, 17:315-324. 10.1007/s00894-010-0725-5, 3029681, 20461427.
    • (2011) J Mol Model , vol.17 , pp. 315-324
    • Kaufmann, K.1    Shen, N.2    Mizoue, L.3    Meiler, J.4
  • 21
    • 80055082271 scopus 로고    scopus 로고
    • Accelerated Profile HMM Searches
    • 10.1371/journal.pcbi.1002195, 3197634, 22039361
    • Eddy SR. Accelerated Profile HMM Searches. PLoS Comput Biol 2011, 7:e1002195. 10.1371/journal.pcbi.1002195, 3197634, 22039361.
    • (2011) PLoS Comput Biol , vol.7
    • Eddy, S.R.1
  • 23
    • 32144432437 scopus 로고    scopus 로고
    • The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
    • 10.1093/bioinformatics/bti770, 16301204
    • Arnold K, Bordoli L, Kopp J, Schwede T. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 2006, 22:195-201. 10.1093/bioinformatics/bti770, 16301204.
    • (2006) Bioinformatics , vol.22 , pp. 195-201
    • Arnold, K.1    Bordoli, L.2    Kopp, J.3    Schwede, T.4
  • 25
    • 64549115839 scopus 로고    scopus 로고
    • Protein structure prediction: when is it useful?
    • 10.1016/j.sbi.2009.02.005, 2673339, 19327982
    • Zhang Y. Protein structure prediction: when is it useful?. Curr Opin Struct Biol 2009, 19:145-155. 10.1016/j.sbi.2009.02.005, 2673339, 19327982.
    • (2009) Curr Opin Struct Biol , vol.19 , pp. 145-155
    • Zhang, Y.1
  • 26
    • 33645972948 scopus 로고    scopus 로고
    • Servers for protein structure prediction
    • 10.1016/j.sbi.2006.03.004, 16546376
    • Fischer D. Servers for protein structure prediction. Curr Opin Struct Biol 2006, 16:178-182. 10.1016/j.sbi.2006.03.004, 16546376.
    • (2006) Curr Opin Struct Biol , vol.16 , pp. 178-182
    • Fischer, D.1
  • 27
    • 40549141792 scopus 로고    scopus 로고
    • QMEAN: A comprehensive scoring function for model quality assessment
    • 10.1002/prot.21715, 17932912
    • Benkert P, Tosatto SC, Schomburg D. QMEAN: A comprehensive scoring function for model quality assessment. Proteins 2008, 71:261-277. 10.1002/prot.21715, 17932912.
    • (2008) Proteins , vol.71 , pp. 261-277
    • Benkert, P.1    Tosatto, S.C.2    Schomburg, D.3
  • 28
    • 0031714858 scopus 로고    scopus 로고
    • JOY: protein sequence-structure representation and analysis
    • 10.1093/bioinformatics/14.7.617, 9730927
    • Mizuguchi K, Deane CM, Blundell TL, Johnson MS, Overington JP. JOY: protein sequence-structure representation and analysis. Bioinformatics 1998, 14:617-623. 10.1093/bioinformatics/14.7.617, 9730927.
    • (1998) Bioinformatics , vol.14 , pp. 617-623
    • Mizuguchi, K.1    Deane, C.M.2    Blundell, T.L.3    Johnson, M.S.4    Overington, J.P.5
  • 29
    • 0000328844 scopus 로고
    • A new vertex algorithm to calculate solvent accessible surface areas
    • Sridharan S, Nicholls A, Honig B. A new vertex algorithm to calculate solvent accessible surface areas. J Biophys 1992, 61:A174.
    • (1992) J Biophys , vol.61
    • Sridharan, S.1    Nicholls, A.2    Honig, B.3
  • 36
    • 33750416896 scopus 로고    scopus 로고
    • PSoL: a positive sample only learning algorithm for finding non-coding RNA genes
    • 10.1093/bioinformatics/btl441, 16945945
    • Wang C, Ding C, Meraz RF, Holbrook SR. PSoL: a positive sample only learning algorithm for finding non-coding RNA genes. Bioinformatics 2006, 22:2590-2596. 10.1093/bioinformatics/btl441, 16945945.
    • (2006) Bioinformatics , vol.22 , pp. 2590-2596
    • Wang, C.1    Ding, C.2    Meraz, R.F.3    Holbrook, S.R.4
  • 38
    • 33646023117 scopus 로고    scopus 로고
    • An introduction to ROC analysis
    • Fawcett T. An introduction to ROC analysis. Pattern Recogn Lett 2006, 27:861-874.
    • (2006) Pattern Recogn Lett , vol.27 , pp. 861-874
    • Fawcett, T.1
  • 40
    • 24044440971 scopus 로고    scopus 로고
    • BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
    • 10.1093/bioinformatics/bti551, 15972284
    • Maere S, Heymans K, Kuiper M. BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 2005, 21:3448-3449. 10.1093/bioinformatics/bti551, 15972284.
    • (2005) Bioinformatics , vol.21 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 41
    • 78649775562 scopus 로고    scopus 로고
    • Enrichment map: a network-based method for gene-set enrichment visualization and interpretation
    • 10.1371/journal.pone.0013984, 2981572, 21085593
    • Merico D, Isserlin R, Stueker O, Emili A, Bader GD. Enrichment map: a network-based method for gene-set enrichment visualization and interpretation. PLoS One 2010, 5:e13984. 10.1371/journal.pone.0013984, 2981572, 21085593.
    • (2010) PLoS One , vol.5
    • Merico, D.1    Isserlin, R.2    Stueker, O.3    Emili, A.4    Bader, G.D.5
  • 42
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • 10.1101/gr.1239303, 403769, 14597658
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003, 13:2498-2504. 10.1101/gr.1239303, 403769, 14597658.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6    Amin, N.7    Schwikowski, B.8    Ideker, T.9
  • 44
    • 84858197572 scopus 로고    scopus 로고
    • Putting into Practice Domain-Linear Motif Interaction Predictions for Exploration of Protein Networks
    • 10.1371/journal.pone.0025376, 3206016, 22069443
    • Luck K, Fournane S, Kieffer B, Masson M, Nominé Y, Travé G. Putting into Practice Domain-Linear Motif Interaction Predictions for Exploration of Protein Networks. PLoS One 2011, 6:e25376. 10.1371/journal.pone.0025376, 3206016, 22069443.
    • (2011) PLoS One , vol.6
    • Luck, K.1    Fournane, S.2    Kieffer, B.3    Masson, M.4    Nominé, Y.5    Travé, G.6
  • 45
    • 0037245913 scopus 로고    scopus 로고
    • BIND: the Biomolecular Interaction Network Database
    • 10.1093/nar/gkg056, 165503, 12519993
    • Bader GD, Betel D, Hogue CW. BIND: the Biomolecular Interaction Network Database. Nucleic Acids Res 2003, 31:248-250. 10.1093/nar/gkg056, 165503, 12519993.
    • (2003) Nucleic Acids Res , vol.31 , pp. 248-250
    • Bader, G.D.1    Betel, D.2    Hogue, C.W.3
  • 53
    • 54949127160 scopus 로고    scopus 로고
    • IRefIndex: a consolidated protein interaction database with provenance
    • Razick S, Magklaras G, Donaldson IM. iRefIndex: a consolidated protein interaction database with provenance. BMC Bioinforma 2008, 9:405.
    • (2008) BMC Bioinforma , vol.9 , pp. 405
    • Razick, S.1    Magklaras, G.2    Donaldson, I.M.3
  • 54
    • 79952074453 scopus 로고    scopus 로고
    • Xenobiotic metabolism, disposition, and regulation by receptors: from biochemical phenomenon to predictors of major toxicities
    • 3145385, 21059794
    • Omiecinski CJ, Vanden Heuvel JP, Perdew GH, Peters JM. Xenobiotic metabolism, disposition, and regulation by receptors: from biochemical phenomenon to predictors of major toxicities. Toxicol Sci 2011, 120(Suppl 1):S49-S75. 3145385, 21059794.
    • (2011) Toxicol Sci , vol.120 , Issue.SUPPL. 1
    • Omiecinski, C.J.1    Vanden Heuvel, J.P.2    Perdew, G.H.3    Peters, J.M.4
  • 55
    • 0026655549 scopus 로고
    • Xenobiotic metabolism by prostaglandin H synthase
    • 10.1016/0163-7258(92)90012-O, 1641409
    • Eling TE, Curtis JF. Xenobiotic metabolism by prostaglandin H synthase. Pharmacol Ther 1992, 53:261-273. 10.1016/0163-7258(92)90012-O, 1641409.
    • (1992) Pharmacol Ther , vol.53 , pp. 261-273
    • Eling, T.E.1    Curtis, J.F.2
  • 57
    • 16844363317 scopus 로고    scopus 로고
    • P2Y receptors play a critical role in epithelial cell communication and migration
    • 10.1002/jcb.20258, 15449317
    • Klepeis VE, Weinger I, Kaczmarek E, Trinkaus-Randall V. P2Y receptors play a critical role in epithelial cell communication and migration. J Cell Biochem 2004, 93:1115-1133. 10.1002/jcb.20258, 15449317.
    • (2004) J Cell Biochem , vol.93 , pp. 1115-1133
    • Klepeis, V.E.1    Weinger, I.2    Kaczmarek, E.3    Trinkaus-Randall, V.4
  • 58
    • 0023449964 scopus 로고
    • Role of platelet-derived growth factor in wound healing: synergistic effects with other growth factors
    • 10.1073/pnas.84.21.7696, 299367, 3499612
    • Lynch SE, Nixon JC, Colvin RB, Antoniades HN. Role of platelet-derived growth factor in wound healing: synergistic effects with other growth factors. Proc Natl Acad Sci USA 1987, 84:7696-7700. 10.1073/pnas.84.21.7696, 299367, 3499612.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 7696-7700
    • Lynch, S.E.1    Nixon, J.C.2    Colvin, R.B.3    Antoniades, H.N.4
  • 59
    • 80052288049 scopus 로고    scopus 로고
    • Regenerative phenotype in mice with a point mutation in transforming growth factor beta type I receptor (TGFBR1)
    • 10.1073/pnas.1111056108, 3167509, 21841138
    • Liu J, Johnson K, Li J, Piamonte V, Steffy BM, Hsieh MH, Ng N, Zhang J, Walker JR, Ding S, et al. Regenerative phenotype in mice with a point mutation in transforming growth factor beta type I receptor (TGFBR1). Proc Natl Acad Sci USA 2011, 108:14560-14565. 10.1073/pnas.1111056108, 3167509, 21841138.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 14560-14565
    • Liu, J.1    Johnson, K.2    Li, J.3    Piamonte, V.4    Steffy, B.M.5    Hsieh, M.H.6    Ng, N.7    Zhang, J.8    Walker, J.R.9    Ding, S.10
  • 60
    • 3242728598 scopus 로고    scopus 로고
    • Diverse and potent activities of HGF/SF in skin wound repair
    • 10.1002/path.1578, 15221943
    • Bevan D, Gherardi E, Fan TP, Edwards D, Warn R. Diverse and potent activities of HGF/SF in skin wound repair. J Pathol 2004, 203:831-838. 10.1002/path.1578, 15221943.
    • (2004) J Pathol , vol.203 , pp. 831-838
    • Bevan, D.1    Gherardi, E.2    Fan, T.P.3    Edwards, D.4    Warn, R.5
  • 61
    • 78149485354 scopus 로고    scopus 로고
    • Plasma membrane calcium-ATPase isoform four distribution changes during corneal epithelial wound healing
    • 2994332, 21139678
    • Talarico EF. Plasma membrane calcium-ATPase isoform four distribution changes during corneal epithelial wound healing. Mol Vis 2010, 16:2259-2272. 2994332, 21139678.
    • (2010) Mol Vis , vol.16 , pp. 2259-2272
    • Talarico, E.F.1
  • 62
    • 77954676151 scopus 로고    scopus 로고
    • Integrins and ion channels in cell migration: implications for neuronal development, wound healing and metastatic spread
    • 10.1007/978-1-4419-6066-5_10, 20549944
    • Becchetti A, Arcangeli A. Integrins and ion channels in cell migration: implications for neuronal development, wound healing and metastatic spread. Adv Exp Med Biol 2010, 674:107-123. 10.1007/978-1-4419-6066-5_10, 20549944.
    • (2010) Adv Exp Med Biol , vol.674 , pp. 107-123
    • Becchetti, A.1    Arcangeli, A.2
  • 63
    • 33746499553 scopus 로고    scopus 로고
    • Fibrin structure and wound healing
    • 10.1111/j.1538-7836.2006.01861.x, 16689737
    • Laurens N, Koolwijk P, de Maat MP. Fibrin structure and wound healing. J Thromb Haemost 2006, 4:932-939. 10.1111/j.1538-7836.2006.01861.x, 16689737.
    • (2006) J Thromb Haemost , vol.4 , pp. 932-939
    • Laurens, N.1    Koolwijk, P.2    de Maat, M.P.3
  • 64
    • 33748443831 scopus 로고    scopus 로고
    • Role of coagulation factor XIII (FXIII) in angiogenesis and tissue repair
    • 10.1159/000093562, 16855365
    • Inbal A, Dardik R. Role of coagulation factor XIII (FXIII) in angiogenesis and tissue repair. Pathophysiol Haemost Thromb 2006, 35:162-165. 10.1159/000093562, 16855365.
    • (2006) Pathophysiol Haemost Thromb , vol.35 , pp. 162-165
    • Inbal, A.1    Dardik, R.2
  • 65
    • 0035075706 scopus 로고    scopus 로고
    • Chemokines in cutaneous wound healing
    • Gillitzer R, Goebeler M. Chemokines in cutaneous wound healing. J Leukoc Biol 2001, 69:513-521.
    • (2001) J Leukoc Biol , vol.69 , pp. 513-521
    • Gillitzer, R.1    Goebeler, M.2
  • 67
    • 66449103341 scopus 로고    scopus 로고
    • Frizzled-PDZ scaffold interactions in the control of Wnt signaling
    • 10.1016/j.advenzreg.2009.01.002, 19534027
    • Wawrzak D, Luyten A, Lambaerts K, Zimmermann P. Frizzled-PDZ scaffold interactions in the control of Wnt signaling. Adv Enzyme Regul 2009, 49:98-106. 10.1016/j.advenzreg.2009.01.002, 19534027.
    • (2009) Adv Enzyme Regul , vol.49 , pp. 98-106
    • Wawrzak, D.1    Luyten, A.2    Lambaerts, K.3    Zimmermann, P.4
  • 68
    • 0032928229 scopus 로고    scopus 로고
    • Negative regulation of axis formation and Wnt signaling in Xenopus embryos by the F-box/WD40 protein beta TrCP
    • 10.1016/S0925-4773(98)00208-1, 10096067
    • Lagna G, Carnevali F, Marchioni M, Hemmati-Brivanlou A. Negative regulation of axis formation and Wnt signaling in Xenopus embryos by the F-box/WD40 protein beta TrCP. Mech Dev 1999, 80:101-106. 10.1016/S0925-4773(98)00208-1, 10096067.
    • (1999) Mech Dev , vol.80 , pp. 101-106
    • Lagna, G.1    Carnevali, F.2    Marchioni, M.3    Hemmati-Brivanlou, A.4
  • 69
    • 53649084334 scopus 로고    scopus 로고
    • Mutated in colorectal cancer, a putative tumor suppressor for serrated colorectal cancer, selectively represses beta-catenin-dependent transcription
    • 10.1038/onc.2008.204, 2574581, 18591935
    • Fukuyama R, Niculaita R, Ng KP, Obusez E, Sanchez J, Kalady M, Aung PP, Casey G, Sizemore N. Mutated in colorectal cancer, a putative tumor suppressor for serrated colorectal cancer, selectively represses beta-catenin-dependent transcription. Oncogene 2008, 27:6044-6055. 10.1038/onc.2008.204, 2574581, 18591935.
    • (2008) Oncogene , vol.27 , pp. 6044-6055
    • Fukuyama, R.1    Niculaita, R.2    Ng, K.P.3    Obusez, E.4    Sanchez, J.5    Kalady, M.6    Aung, P.P.7    Casey, G.8    Sizemore, N.9
  • 71
    • 38449105708 scopus 로고    scopus 로고
    • MeTaDoR: a comprehensive resource for membrane targeting domains and their host proteins
    • 10.1093/bioinformatics/btm395, 17720983
    • Bhardwaj N, Stahelin RV, Zhao G, Cho W, Lu H. MeTaDoR: a comprehensive resource for membrane targeting domains and their host proteins. Bioinformatics 2007, 23:3110-3112. 10.1093/bioinformatics/btm395, 17720983.
    • (2007) Bioinformatics , vol.23 , pp. 3110-3112
    • Bhardwaj, N.1    Stahelin, R.V.2    Zhao, G.3    Cho, W.4    Lu, H.5
  • 72
    • 70350697850 scopus 로고    scopus 로고
    • 3D-SURFER: software for high-throughput protein surface comparison and analysis
    • 10.1093/bioinformatics/btp542, 2912717, 19759195
    • La D, Esquivel-Rodriguez J, Venkatraman V, Li B, Sael L, Ueng S, Ahrendt S, Kihara D. 3D-SURFER: software for high-throughput protein surface comparison and analysis. Bioinformatics 2009, 25:2843-2844. 10.1093/bioinformatics/btp542, 2912717, 19759195.
    • (2009) Bioinformatics , vol.25 , pp. 2843-2844
    • La, D.1    Esquivel-Rodriguez, J.2    Venkatraman, V.3    Li, B.4    Sael, L.5    Ueng, S.6    Ahrendt, S.7    Kihara, D.8
  • 73
    • 19544389524 scopus 로고    scopus 로고
    • Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons
    • 10.1093/bioinformatics/bti337, 15728116
    • Morris RJ, Najmanovich RJ, Kahraman A, Thornton JM. Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. Bioinformatics 2005, 21:2347-2355. 10.1093/bioinformatics/bti337, 15728116.
    • (2005) Bioinformatics , vol.21 , pp. 2347-2355
    • Morris, R.J.1    Najmanovich, R.J.2    Kahraman, A.3    Thornton, J.M.4
  • 74
    • 34648828242 scopus 로고    scopus 로고
    • Solution structure of the hDlg/SAP97 PDZ2 domain and its mechanism of interaction with HPV-18 papillomavirus E6 protein
    • 10.1021/bi700879k, 17713926
    • Liu Y, Henry GD, Hegde RS, Baleja JD. Solution structure of the hDlg/SAP97 PDZ2 domain and its mechanism of interaction with HPV-18 papillomavirus E6 protein. Biochemistry 2007, 46:10864-10874. 10.1021/bi700879k, 17713926.
    • (2007) Biochemistry , vol.46 , pp. 10864-10874
    • Liu, Y.1    Henry, G.D.2    Hegde, R.S.3    Baleja, J.D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.