-
2
-
-
84862172768
-
The extended nutrigenomics - understanding the interplay between the genomes of food, gut microbes, and human host
-
Kussmann M., Van Bladeren P.J. The extended nutrigenomics - understanding the interplay between the genomes of food, gut microbes, and human host. Front Genet 2011, 2:21.
-
(2011)
Front Genet
, vol.2
, pp. 21
-
-
Kussmann, M.1
Van Bladeren, P.J.2
-
3
-
-
0037425743
-
Gut flora in health and disease
-
Guarner F., Malagelada J.R. Gut flora in health and disease. Lancet 2003, 361:512-519.
-
(2003)
Lancet
, vol.361
, pp. 512-519
-
-
Guarner, F.1
Malagelada, J.R.2
-
4
-
-
77958084893
-
Organotypic 3D cell culture models: using the rotating wall vessel to study host-pathogen interactions
-
Barrila J., Radtke A.L., Crabbe A., Sarker S.F., Herbst-Kralovetz M.M., Ott C.M., Nickerson C.A. Organotypic 3D cell culture models: using the rotating wall vessel to study host-pathogen interactions. Nat Rev Microbiol 2010, 8:791-801.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 791-801
-
-
Barrila, J.1
Radtke, A.L.2
Crabbe, A.3
Sarker, S.F.4
Herbst-Kralovetz, M.M.5
Ott, C.M.6
Nickerson, C.A.7
-
5
-
-
84355163054
-
Advances and perspectives in in vitro human gut fermentation modeling
-
Payne A.N., Zihler A., Chassard C., Lacroix C. Advances and perspectives in in vitro human gut fermentation modeling. Trends Biotechnol 2012, 30:17-25.
-
(2012)
Trends Biotechnol
, vol.30
, pp. 17-25
-
-
Payne, A.N.1
Zihler, A.2
Chassard, C.3
Lacroix, C.4
-
6
-
-
84861578826
-
Probiotic and postbiotic activity in health and disease: comparison on a novel polarised ex-vivo organ culture model
-
Tsilingiri K., Barbosa T., Penna G., Caprioli F., Sonzogni A., Viale G., Rescigno M. Probiotic and postbiotic activity in health and disease: comparison on a novel polarised ex-vivo organ culture model. Gut 2012, 61:1007-1015.
-
(2012)
Gut
, vol.61
, pp. 1007-1015
-
-
Tsilingiri, K.1
Barbosa, T.2
Penna, G.3
Caprioli, F.4
Sonzogni, A.5
Viale, G.6
Rescigno, M.7
-
7
-
-
79956075540
-
Colonization-induced host-gut microbial metabolic interaction
-
e00271-00210
-
Claus S.P., Ellero S.L., Berger B., Krause L., Bruttin A., Molina J., Paris A., Want E.J., de Waziers I., Cloarec O., et al. Colonization-induced host-gut microbial metabolic interaction. MBio 2011, 2. e00271-00210.
-
(2011)
MBio
, vol.2
-
-
Claus, S.P.1
Ellero, S.L.2
Berger, B.3
Krause, L.4
Bruttin, A.5
Molina, J.6
Paris, A.7
Want, E.J.8
de Waziers, I.9
Cloarec, O.10
-
8
-
-
65249149643
-
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
-
Mahowald M.A., Rey F.E., Seedorf H., Turnbaugh P.J., Fulton R.S., Wollam A., Shah N., Wang C., Magrini V., Wilson R.K., et al. Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proc Natl Acad Sci USA 2009, 106:5859-5864.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 5859-5864
-
-
Mahowald, M.A.1
Rey, F.E.2
Seedorf, H.3
Turnbaugh, P.J.4
Fulton, R.S.5
Wollam, A.6
Shah, N.7
Wang, C.8
Magrini, V.9
Wilson, R.K.10
-
9
-
-
79959467647
-
Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans
-
Jumpertz R., Le D.S., Turnbaugh P.J., Trinidad C., Bogardus C., Gordon J.I., Krakoff J. Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans. Am J Clin Nutr 2011, 94:58-65.
-
(2011)
Am J Clin Nutr
, vol.94
, pp. 58-65
-
-
Jumpertz, R.1
Le, D.S.2
Turnbaugh, P.J.3
Trinidad, C.4
Bogardus, C.5
Gordon, J.I.6
Krakoff, J.7
-
10
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J., Li R., Raes J., Arumugam M., Burgdorf K.S., Manichanh C., Nielsen T., Pons N., Levenez F., Yamada T., et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010, 464:59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
Nielsen, T.7
Pons, N.8
Levenez, F.9
Yamada, T.10
-
11
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
Yatsunenko T., Rey F.E., Manary M.J., Trehan I., Dominguez-Bello M.G., Contreras M., Magris M., Hidalgo G., Baldassano R.N., Anokhin A.P., et al. Human gut microbiome viewed across age and geography. Nature 2012, 486:222-227.
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
Magris, M.7
Hidalgo, G.8
Baldassano, R.N.9
Anokhin, A.P.10
-
12
-
-
63849262393
-
Linking phylogenetic identities of bacteria to starch fermentation in an in vitro model of the large intestine by RNA-based stable isotope probing
-
Kovatcheva-Datchary P., Egert M., Maathuis A., Rajilic-Stojanovic M., de Graaf A.A., Smidt H., de Vos W.M., Venema K. Linking phylogenetic identities of bacteria to starch fermentation in an in vitro model of the large intestine by RNA-based stable isotope probing. Environ Microbiol 2009, 11:914-926.
-
(2009)
Environ Microbiol
, vol.11
, pp. 914-926
-
-
Kovatcheva-Datchary, P.1
Egert, M.2
Maathuis, A.3
Rajilic-Stojanovic, M.4
de Graaf, A.A.5
Smidt, H.6
de Vos, W.M.7
Venema, K.8
-
13
-
-
75149129569
-
A protocol for generating a high-quality genome-scale metabolic reconstruction
-
Thiele I., Palsson B.O. A protocol for generating a high-quality genome-scale metabolic reconstruction. Nat Protoc 2010, 5:93-121.
-
(2010)
Nat Protoc
, vol.5
, pp. 93-121
-
-
Thiele, I.1
Palsson, B.O.2
-
14
-
-
79960126760
-
RBioNet: a COBRA toolbox extension for reconstructing high-quality biochemical networks
-
Thorleifsson S.G., Thiele I. rBioNet: a COBRA toolbox extension for reconstructing high-quality biochemical networks. Bioinformatics 2011, 27:2009-2010.
-
(2011)
Bioinformatics
, vol.27
, pp. 2009-2010
-
-
Thorleifsson, S.G.1
Thiele, I.2
-
15
-
-
77956696072
-
High-throughput generation, optimization and analysis of genome-scale metabolic models
-
Henry C.S., DeJongh M., Best A.A., Frybarger P.M., Linsay B., Stevens R.L. High-throughput generation, optimization and analysis of genome-scale metabolic models. Nat Biotechnol 2010, 28:977-982.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 977-982
-
-
Henry, C.S.1
DeJongh, M.2
Best, A.A.3
Frybarger, P.M.4
Linsay, B.5
Stevens, R.L.6
-
16
-
-
58549108388
-
Reconstruction of biochemical networks in microorganisms
-
Feist A.M., Herrgard M.J., Thiele I., Reed J.L., Palsson B.O. Reconstruction of biochemical networks in microorganisms. Nat Rev Microbiol 2009, 7:129-143.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 129-143
-
-
Feist, A.M.1
Herrgard, M.J.2
Thiele, I.3
Reed, J.L.4
Palsson, B.O.5
-
18
-
-
45149111660
-
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
-
Feist A.M., Palsson B.O. The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli. Nat Biotechnol 2008, 26:659-667.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 659-667
-
-
Feist, A.M.1
Palsson, B.O.2
-
20
-
-
84858439602
-
Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods
-
Lewis N.E., Nagarajan H., Palsson B.O. Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods. Nat Rev Microbiol 2012, 10:291-305.
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 291-305
-
-
Lewis, N.E.1
Nagarajan, H.2
Palsson, B.O.3
-
21
-
-
40049101759
-
Predicting biological system objectives de novo from internal state measurements
-
Gianchandani E.P., Oberhardt M.A., Burgard A.P., Maranas C.D., Papin J.A. Predicting biological system objectives de novo from internal state measurements. BMC Bioinform 2008, 9:43.
-
(2008)
BMC Bioinform
, vol.9
, pp. 43
-
-
Gianchandani, E.P.1
Oberhardt, M.A.2
Burgard, A.P.3
Maranas, C.D.4
Papin, J.A.5
-
22
-
-
34447523907
-
Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
-
Schuetz R., Kuepfer L., Sauer U. Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli. Mol Syst Biol 2007, 3:1-15.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 1-15
-
-
Schuetz, R.1
Kuepfer, L.2
Sauer, U.3
-
23
-
-
34249708861
-
Integrated energy and flux balance based multiobjective framework for large-scale metabolic networks
-
Nagrath D., Avila-Elchiver M., Berthiaume F., Tilles A.W., Messac A., Yarmush M.L. Integrated energy and flux balance based multiobjective framework for large-scale metabolic networks. Ann Biomed Eng 2007, 35:863-885.
-
(2007)
Ann Biomed Eng
, vol.35
, pp. 863-885
-
-
Nagrath, D.1
Avila-Elchiver, M.2
Berthiaume, F.3
Tilles, A.W.4
Messac, A.5
Yarmush, M.L.6
-
24
-
-
65549092780
-
Use of randomized sampling for analysis of metabolic networks
-
Schellenberger J., Palsson B.O. Use of randomized sampling for analysis of metabolic networks. J Biol Chem 2009, 284:5457-5461.
-
(2009)
J Biol Chem
, vol.284
, pp. 5457-5461
-
-
Schellenberger, J.1
Palsson, B.O.2
-
25
-
-
9544253891
-
Genome-scale models of microbial cells: evaluating the consequences of constraints
-
Price N.D., Reed J.L., Palsson B.O. Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat Rev Microbiol 2004, 2:886-897.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 886-897
-
-
Price, N.D.1
Reed, J.L.2
Palsson, B.O.3
-
26
-
-
79551662521
-
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
-
Schellenberger J., Que R., Fleming R.M., Thiele I., Orth J.D., Feist A.M., Zielinski D.C., Bordbar A., Lewis N.E., Rahmanian S., et al. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. Nat Protoc 2011, 6:1290-1307.
-
(2011)
Nat Protoc
, vol.6
, pp. 1290-1307
-
-
Schellenberger, J.1
Que, R.2
Fleming, R.M.3
Thiele, I.4
Orth, J.D.5
Feist, A.M.6
Zielinski, D.C.7
Bordbar, A.8
Lewis, N.E.9
Rahmanian, S.10
-
27
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
Duarte N.C., Becker S.A., Jamshidi N., Thiele I., Mo M.L., Vo T.D., Srivas R., Palsson B.O. Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci USA 2007, 104:1777-1782.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1777-1782
-
-
Duarte, N.C.1
Becker, S.A.2
Jamshidi, N.3
Thiele, I.4
Mo, M.L.5
Vo, T.D.6
Srivas, R.7
Palsson, B.O.8
-
28
-
-
84855929956
-
Using the reconstructed genome-scale human metabolic network to study physiology and pathology
-
Bordbar A., Palsson B.O. Using the reconstructed genome-scale human metabolic network to study physiology and pathology. J Intern Med 2012, 271:131-141.
-
(2012)
J Intern Med
, vol.271
, pp. 131-141
-
-
Bordbar, A.1
Palsson, B.O.2
-
29
-
-
77957924740
-
A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1
-
Sigurdsson M.I., Jamshidi N., Steingrimsson E., Thiele I., Palsson B.O. A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1. BMC Syst Biol 2010, 4:140.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 140
-
-
Sigurdsson, M.I.1
Jamshidi, N.2
Steingrimsson, E.3
Thiele, I.4
Palsson, B.O.5
-
30
-
-
72949118860
-
Genome-scale modeling and in silico analysis of mouse cell metabolic network
-
Selvarasu S., Karimi I.A., Ghim G.H., Lee D.Y. Genome-scale modeling and in silico analysis of mouse cell metabolic network. Mol Biosyst 2010, 6:152-161.
-
(2010)
Mol Biosyst
, vol.6
, pp. 152-161
-
-
Selvarasu, S.1
Karimi, I.A.2
Ghim, G.H.3
Lee, D.Y.4
-
31
-
-
84859920505
-
Quantitative assignment of reaction directionality in a multicompartmental human metabolic reconstruction
-
Haraldsdottir H.S., Thiele I., Fleming R.M. Quantitative assignment of reaction directionality in a multicompartmental human metabolic reconstruction. Biophys J 2012, 102:1703-1711.
-
(2012)
Biophys J
, vol.102
, pp. 1703-1711
-
-
Haraldsdottir, H.S.1
Thiele, I.2
Fleming, R.M.3
-
32
-
-
0344328817
-
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
-
Reed J.L., Vo T.D., Schilling C.H., Palsson B.O. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biol 2003, 4:R54.
-
(2003)
Genome Biol
, vol.4
-
-
Reed, J.L.1
Vo, T.D.2
Schilling, C.H.3
Palsson, B.O.4
-
33
-
-
33947276100
-
Metabolic modeling of a mutualistic microbial community
-
Stolyar S., Van Dien S., Hillesland K.L., Pinel N., Lie T.J., Leigh J.A., Stahl D.A. Metabolic modeling of a mutualistic microbial community. Mol Syst Biol 2007, 3:92.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 92
-
-
Stolyar, S.1
Van Dien, S.2
Hillesland, K.L.3
Pinel, N.4
Lie, T.J.5
Leigh, J.A.6
Stahl, D.A.7
-
34
-
-
78649677586
-
Environments that induce synthetic microbial ecosystems
-
Klitgord N., Segre D. Environments that induce synthetic microbial ecosystems. PLoS Comput Biol 2010, 6:e1001002.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Klitgord, N.1
Segre, D.2
-
35
-
-
84455174807
-
Competitive and cooperative metabolic interactions in bacterial communities
-
Freilich S., Zarecki R., Eilam O., Segal E.S., Henry C.S., Kupiec M., Gophna U., Sharan R., Ruppin E. Competitive and cooperative metabolic interactions in bacterial communities. Nat Commun 2011, 2:589.
-
(2011)
Nat Commun
, vol.2
, pp. 589
-
-
Freilich, S.1
Zarecki, R.2
Eilam, O.3
Segal, E.S.4
Henry, C.S.5
Kupiec, M.6
Gophna, U.7
Sharan, R.8
Ruppin, E.9
-
36
-
-
78751584992
-
Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments
-
Zhuang K., Izallalen M., Mouser P., Richter H., Risso C., Mahadevan R., Lovley D.R. Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments. ISME J 2011, 5:305-316.
-
(2011)
ISME J
, vol.5
, pp. 305-316
-
-
Zhuang, K.1
Izallalen, M.2
Mouser, P.3
Richter, H.4
Risso, C.5
Mahadevan, R.6
Lovley, D.R.7
-
37
-
-
84861180223
-
OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities
-
Zomorrodi A.R., Maranas C.D. OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities. PLoS Comput Biol 2012, 8:e1002363.
-
(2012)
PLoS Comput Biol
, vol.8
-
-
Zomorrodi, A.R.1
Maranas, C.D.2
-
38
-
-
84856011484
-
Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
-
Greenblum S., Turnbaugh P.J., Borenstein E. Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease. Proc Natl Acad Sci USA 2012, 109:594-599.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 594-599
-
-
Greenblum, S.1
Turnbaugh, P.J.2
Borenstein, E.3
-
39
-
-
84864037467
-
Metabolic reconstruction for metagenomic data and its application to the human microbiome
-
Abubucker S., Segata N., Goll J., Schubert A.M., Izard J., Cantarel B.L., Rodriguez-Mueller B., Zucker J., Thiagarajan M., Henrissat B., et al. Metabolic reconstruction for metagenomic data and its application to the human microbiome. PLoS Comput Biol 2012, 8:e1002358.
-
(2012)
PLoS Comput Biol
, vol.8
-
-
Abubucker, S.1
Segata, N.2
Goll, J.3
Schubert, A.M.4
Izard, J.5
Cantarel, B.L.6
Rodriguez-Mueller, B.7
Zucker, J.8
Thiagarajan, M.9
Henrissat, B.10
-
40
-
-
84866986817
-
Computational systems biology and in silico modeling of the human microbiome
-
Borenstein E. Computational systems biology and in silico modeling of the human microbiome. Brief Bioinform 2012, 10.1093/bib/bbs022.
-
(2012)
Brief Bioinform
-
-
Borenstein, E.1
-
41
-
-
84859856422
-
A systems biology approach to drug targets in Pseudomonas aeruginosa biofilm
-
Sigurdsson G., Fleming R.M., Heinken A., Thiele I. A systems biology approach to drug targets in Pseudomonas aeruginosa biofilm. PLoS ONE 2012, 7:e34337.
-
(2012)
PLoS ONE
, vol.7
-
-
Sigurdsson, G.1
Fleming, R.M.2
Heinken, A.3
Thiele, I.4
-
42
-
-
77957837882
-
Metabolic network analysis of Pseudomonas aeruginosa during chronic cystic fibrosis lung infection
-
Oberhardt M.A., Goldberg J.B., Hogardt M., Papin J.A. Metabolic network analysis of Pseudomonas aeruginosa during chronic cystic fibrosis lung infection. J Bacteriol 2010, 192:5534-5548.
-
(2010)
J Bacteriol
, vol.192
, pp. 5534-5548
-
-
Oberhardt, M.A.1
Goldberg, J.B.2
Hogardt, M.3
Papin, J.A.4
-
43
-
-
77958537509
-
Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions
-
Bordbar A., Lewis N.E., Schellenberger J., Palsson B.O., Jamshidi N. Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions. Mol Syst Biol 2010, 6:422.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 422
-
-
Bordbar, A.1
Lewis, N.E.2
Schellenberger, J.3
Palsson, B.O.4
Jamshidi, N.5
-
44
-
-
77956456621
-
Antimalarial drug targets in Plasmodium falciparum predicted by stage-specific metabolic network analysis
-
Huthmacher C., Hoppe A., Bulik S., Holzhutter H.G. Antimalarial drug targets in Plasmodium falciparum predicted by stage-specific metabolic network analysis. BMC Syst Biol 2010, 4:120.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 120
-
-
Huthmacher, C.1
Hoppe, A.2
Bulik, S.3
Holzhutter, H.G.4
-
45
-
-
84871588520
-
Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut
-
Heinken A., Sahoo S., Fleming R.M.T., Thiele I. Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut. Gut Microbes. 2013, 4(1):1-13.
-
(2013)
Gut Microbes.
, vol.4
, Issue.1
, pp. 1-13
-
-
Heinken, A.1
Sahoo, S.2
Fleming, R.M.T.3
Thiele, I.4
-
46
-
-
77952774546
-
Functional characterization of alternate optimal solutions of Escherichia coli's transcriptional and translational machinery
-
Thiele I., Fleming R.M., Bordbar A., Schellenberger J., Palsson B.O. Functional characterization of alternate optimal solutions of Escherichia coli's transcriptional and translational machinery. Biophys J 2010, 98:2072-2081.
-
(2010)
Biophys J
, vol.98
, pp. 2072-2081
-
-
Thiele, I.1
Fleming, R.M.2
Bordbar, A.3
Schellenberger, J.4
Palsson, B.O.5
-
47
-
-
84857999389
-
A metabolic network approach for the identification and prioritization of antimicrobial drug targets
-
Chavali A.K., D'Auria K.M., Hewlett E.L., Pearson R.D., Papin J.A. A metabolic network approach for the identification and prioritization of antimicrobial drug targets. Trends Microbiol 2012, 20(3):113-123.
-
(2012)
Trends Microbiol
, vol.20
, Issue.3
, pp. 113-123
-
-
Chavali, A.K.1
D'Auria, K.M.2
Hewlett, E.L.3
Pearson, R.D.4
Papin, J.A.5
-
48
-
-
79960886981
-
Systems biology of bacterial nitrogen fixation: high-throughput technology and its integrative description with constraint-based modeling
-
Resendis-Antonio O., Hernandez M., Salazar E., Contreras S., Batallar G.M., Mora Y., Encarnacion S. Systems biology of bacterial nitrogen fixation: high-throughput technology and its integrative description with constraint-based modeling. BMC Syst Biol 2011, 5:120.
-
(2011)
BMC Syst Biol
, vol.5
, pp. 120
-
-
Resendis-Antonio, O.1
Hernandez, M.2
Salazar, E.3
Contreras, S.4
Batallar, G.M.5
Mora, Y.6
Encarnacion, S.7
-
49
-
-
62149098396
-
A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola
-
Thomas G.H., Zucker J., Macdonald S.J., Sorokin A., Goryanin I., Douglas A.E. A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola. BMC Syst Biol 2009, 3:24.
-
(2009)
BMC Syst Biol
, vol.3
, pp. 24
-
-
Thomas, G.H.1
Zucker, J.2
Macdonald, S.J.3
Sorokin, A.4
Goryanin, I.5
Douglas, A.E.6
-
50
-
-
84856177977
-
Metabolic networks of Sodalis glossinidius: a systems biology approach to reductive evolution
-
Belda E., Silva F.J., Pereto J., Moya A. Metabolic networks of Sodalis glossinidius: a systems biology approach to reductive evolution. PLoS ONE 2012, 7:e30652.
-
(2012)
PLoS ONE
, vol.7
-
-
Belda, E.1
Silva, F.J.2
Pereto, J.3
Moya, A.4
-
51
-
-
63549148162
-
Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization
-
Thiele I., Jamshidi N., Fleming R.M., Palsson B.O. Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization. PLoS Comput Biol 2009, 5:e1000312.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Thiele, I.1
Jamshidi, N.2
Fleming, R.M.3
Palsson, B.O.4
-
52
-
-
84866975246
-
Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage
-
Thiele I., Fleming R.M.T., Que R., Bordbar A., Diep D., Palsson B.O. Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage. PLoS ONE 2012, 7(9):e45635.
-
(2012)
PLoS ONE
, vol.7
, Issue.9
-
-
Thiele, I.1
Fleming, R.M.T.2
Que, R.3
Bordbar, A.4
Diep, D.5
Palsson, B.O.6
-
53
-
-
44949247269
-
Dynamic analysis of integrated signaling, metabolic, and regulatory networks
-
Lee J.M., Gianchandani E.P., Eddy J.A., Papin J.A. Dynamic analysis of integrated signaling, metabolic, and regulatory networks. PLoS Comput Biol 2008, 4:e1000086.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Lee, J.M.1
Gianchandani, E.P.2
Eddy, J.A.3
Papin, J.A.4
-
54
-
-
51749113592
-
Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli
-
Covert M.W., Xiao N., Chen T.J., Karr J.R. Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli. Bioinformatics 2008, 24:2044-2050.
-
(2008)
Bioinformatics
, vol.24
, pp. 2044-2050
-
-
Covert, M.W.1
Xiao, N.2
Chen, T.J.3
Karr, J.R.4
-
55
-
-
33644527950
-
The model organism as a system: integrating 'omics' data sets
-
Joyce A.R., Palsson B.O. The model organism as a system: integrating 'omics' data sets. Nat Rev Mol Cell Biol 2006, 7:198-210.
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 198-210
-
-
Joyce, A.R.1
Palsson, B.O.2
|