rBioNet: A COBRA toolbox extension for reconstructing high-quality biochemical networks

Bioinformatics

Volumn 27, Issue 14, 2011, Pages 2009-2010

  Thorleifsson, Stefan Gretar ^a   Thiele, Ines ^a  

^a UNIVERSITY OF ICELAND   (Iceland)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME MAP; COMPUTER PROGRAM; DATA BASE; GENOME; METABOLISM; QUALITY CONTROL; SYSTEMS BIOLOGY;

CHROMOSOME MAPPING; DATABASES AS TOPIC; GENOME; METABOLIC NETWORKS AND PATHWAYS; QUALITY CONTROL; SOFTWARE; SYSTEMS BIOLOGY;

EID: 79960126760     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr308     Document Type: Article

References (7)

1. Becker,S. et al. (2007) Quantitative prediction of cellular metabolism with constraintbased models: The COBRA Toolbox. Nat. Prot., 2, 727-738.
2. Gille,C. et al. (2007) METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks. BMC Syst. Biol., 1, 5.
3. Kanehisa,M. et al. (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res., 38, D355.
4. Pabinger,S. et al. (2011) MEMOSys: Bioinformatics platform for genome-scale metabolic models. BMC Syst. Biol., 5, 20.
5. Palsson,B.Ø. (2006) Systems Biology: Properties of Reconstructed Networks. Cambridge University Press, New York, NY, USA, pp. 10011-4211.
6. Schellenberger,J. et al. (2011) Quantitative prediction of cellular metabolism with constraint-based models: the COBRA toolbox v2.0. Nat. Protoc., in press.
7. Thiele,I. and Palsson,B.Ø. (2010)Aprotocol for generating a high-quality genome-scale metabolic reconstruction. Nat. Protoc., 5, 93-121.