Quality assessment and data handling methods for Affymetrix Gene 1.0 ST arrays with variable RNA integrity

BMC Genomics

Volumn 14, Issue 1, 2013, Pages

  Viljoen, Katie S ^a   Blackburn, Jonathan M ^a  

^a UNIVERSITY OF CAPE TOWN   (South Africa)

Author keywords

ComBat; Gene expression profiling; Microarray; Non biological experimental variance; Quality control; RNA integrity number; RNA quality; Surrogate variable analysis

Indexed keywords

RNA;

ACCURACY; ARTICLE; COLORECTAL CANCER; CONTROLLED STUDY; GENE EXPRESSION PROFILING; GENETIC ANALYSIS; GENETIC IDENTIFICATION; GENETIC PARAMETERS; GENETIC TRANSCRIPTION; HUMAN; HUMAN TISSUE; INFORMATION PROCESSING; MICROARRAY ANALYSIS; PRIMARY TUMOR; QUALITY CONTROL; REAL TIME POLYMERASE CHAIN REACTION; RELIABILITY; RNA DEGRADATION; RNA INTEGRITY NUMBER; SYSTEMATIC ERROR; VALIDATION STUDY;

ALGORITHMS; COLORECTAL NEOPLASMS; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERASE CHAIN REACTION; QUALITY CONTROL; RNA; RNA STABILITY; RNA, MESSENGER;

EQUUS ASINUS;

EID: 84872184614     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-14     Document Type: Article

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