-
1
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19(2):185-193
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
2
-
-
34147136617
-
Exploration, normalization, and genotype calls of high-density oligonucleotide snp array data
-
Carvalho B, Bengtsson H, Speed TP, Irizarry RA (2007) Exploration, normalization, and genotype calls of high-density oligonucleotide snp array data. Biostatistics 8(2):485-499
-
(2007)
Biostatistics
, vol.8
, Issue.2
, pp. 485-499
-
-
Carvalho, B.1
Bengtsson, H.2
Speed, T.P.3
Irizarry, R.A.4
-
4
-
-
34247566504
-
An R package for the analysis of whole-genome association studies
-
Clayton D, Leung HT (2007) An R package for the analysis of whole-genome association studies. Hum Hered 64:45-51
-
(2007)
Hum Hered
, vol.64
, pp. 45-51
-
-
Clayton, D.1
Leung, H.T.2
-
5
-
-
79959503826
-
The international Hap Map project
-
The International Hap Map Consortium
-
The International Hap Map Consortium (2003) The international Hap Map project. Nature 426(6968):789-796
-
(2003)
Nature
, vol.426
, Issue.6968
, pp. 789-796
-
-
-
6
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5(10):R80
-
(2004)
Genome Biol
, vol.5
, Issue.10
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.Y.H.24
Zhang, J.25
more..
-
7
-
-
59149088407
-
Repeatability of published microarray gene expression analyses
-
Ioannidis JPA, Allison DB, Ball CA, Coulibaly I, Cui X, Culhane AC, Falchi M, Furlanello C, Game L, Jurman G, Mangion J, Mehta T, Nitzberg M, Page GP, Petretto E, van Noort V (2009) Repeatability of published microarray gene expression analyses. Nat Genet 41(2):149-155
-
(2009)
Nat Genet
, vol.41
, Issue.2
, pp. 149-155
-
-
Ioannidis, J.P.A.1
Allison, D.B.2
Ball, C.A.3
Coulibaly, I.4
Cui, X.5
Culhane, A.C.6
Falchi, M.7
Furlanello, C.8
Game, L.9
Jurman, G.10
Mangion, J.11
Mehta, T.12
Nitzberg, M.13
Page, G.P.14
Petretto, E.15
van Noort, V.16
-
8
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4(2):249-264
-
(2003)
Biostatistics
, vol.4
, Issue.2
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
9
-
-
67649837030
-
Rtracklayer: An R package for interfacing with genome browsers
-
Lawrence M, Gentleman R, Carey V (2009) Rtracklayer: an R package for interfacing with genome browsers. Bioinformatics
-
(2009)
Bioinformatics
-
-
Lawrence, M.1
Gentleman, R.2
Carey, V.3
-
10
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
Li C, Wong WH (2001a) Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci USA 98(1):31-36
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, Issue.1
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
11
-
-
17744413236
-
Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
-
RESEARCH0032
-
Li C, Wong WH (2001b) Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. Genome Biology 2(8):RESEARCH0032
-
(2001)
Genome Biology
, vol.2
, Issue.8
-
-
Li, C.1
Wong, W.H.2
-
12
-
-
47149098635
-
Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays
-
Lin S, Carvalho BS, Cutler D, Arking D, Chakravarti A, Irizarry R (2008) Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays. Genome Biol 9(4):R63
-
(2008)
Genome Biol
, vol.9
, Issue.4
-
-
Lin, S.1
Carvalho, B.S.2
Cutler, D.3
Arking, D.4
Chakravarti, A.5
Irizarry, R.6
-
14
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Smyth GK (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol
-
(2004)
Stat Appl Genet Mol Biol
-
-
Smyth, G.K.1
-
16
-
-
38849093314
-
The influence of genetic variation on gene expression
-
Williams RB, Chan E, Cowley MJ, Little PF (2007) The influence of genetic variation on gene expression. Genome Res 17(12):1707-1716
-
(2007)
Genome Res
, vol.17
, Issue.12
, pp. 1707-1716
-
-
Williams, R.B.1
Chan, E.2
Cowley, M.J.3
Little, P.F.4
-
17
-
-
10844290766
-
FMM A model-based background adjustment for oligonucleotide expression arrays
-
Wu Z, Irizarry RA, Gentleman RC, (2004) FMM A model-based background adjustment for oligonucleotide expression arrays. J Am Stat Assoc 99(468):909-917
-
(2004)
J Am Stat Assoc
, vol.99
, Issue.468
, pp. 909-917
-
-
Wu, Z.1
Irizarry, R.A.2
Gentleman, R.C.3
|