메뉴 건너뛰기




Volumn 55, Issue 4, 2004, Pages 346-352

Effect of agonal and postmortem factors on gene expression profile: Quality control in microarray analyses of postmortem human brain

Author keywords

Adenine Uracil rich elements; Bipolar disorder; Freezer interval; Iron responsive element; Major depressive disorder; Postmortem interval

Indexed keywords

RNA;

EID: 10744228401     PISSN: 00063223     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biopsych.2003.10.013     Document Type: Review
Times cited : (274)

References (36)
  • 1
    • 0018410818 scopus 로고
    • Effect of anoxia and ischemia on ribonuclease activity in brain
    • Albrecht J., Yanagihara T. Effect of anoxia and ischemia on ribonuclease activity in brain. J Neurochem. 32:1979;1131-1133.
    • (1979) J Neurochem , vol.32 , pp. 1131-1133
    • Albrecht, J.1    Yanagihara, T.2
  • 4
    • 0038811923 scopus 로고    scopus 로고
    • Microarray technology: A review of new strategies to discover candidate vulnerability genes in psychiatric disorders
    • Bunney W.E., Bunney B.G., Vawter M.P., Tomita H., Li J., Evans S.J., et al. Microarray technology A review of new strategies to discover candidate vulnerability genes in psychiatric disorders . Am J Psychiatry. 160:2003;657-666.
    • (2003) Am J Psychiatry , vol.160 , pp. 657-666
    • Bunney, W.E.1    Bunney, B.G.2    Vawter, M.P.3    Tomita, H.4    Li, J.5    Evans, S.J.6
  • 7
    • 0035836642 scopus 로고    scopus 로고
    • Genome-wide expression analysis reveals dysregulation of myelination-related genes in chronic schizophrenia
    • Hakak Y., Walker J.R., Li C., Wong W.H., Davis K.L., Buxbaum J.D., et al. Genome-wide expression analysis reveals dysregulation of myelination-related genes in chronic schizophrenia. Proc Natl Acad Sci U S A. 98:2001;4746-4751.
    • (2001) Proc Natl Acad Sci U S a , vol.98 , pp. 4746-4751
    • Hakak, Y.1    Walker, J.R.2    Li, C.3    Wong, W.H.4    Davis, K.L.5    Buxbaum, J.D.6
  • 8
    • 0021921539 scopus 로고
    • The patients dying after long terminal phase have acidotic brains: Implications for biochemical measurements on autopsy tissue
    • Hardy J.A., Wester P., Winblad B., Gezelius C., Bring G., Eriksson A. The patients dying after long terminal phase have acidotic brains Implications for biochemical measurements on autopsy tissue . J Neural Transm. 61:1985;253-264.
    • (1985) J Neural Transm , vol.61 , pp. 253-264
    • Hardy, J.A.1    Wester, P.2    Winblad, B.3    Gezelius, C.4    Bring, G.5    Eriksson, A.6
  • 9
    • 0024456475 scopus 로고
    • The role of mRNA and protein stability in gene expression
    • Hargrove J.L., Schmidt F.H. The role of mRNA and protein stability in gene expression. FASEB J. 3:1989;2360-2370.
    • (1989) FASEB J , vol.3 , pp. 2360-2370
    • Hargrove, J.L.1    Schmidt, F.H.2
  • 10
    • 0026318897 scopus 로고
    • Regional and neuronal reductions of polyadenylated messenger RNA in Alzheimer's disease
    • Harrison P.J., Barton A.J., Najlerahim A., McDonald B., Pearson R.C. Regional and neuronal reductions of polyadenylated messenger RNA in Alzheimer's disease. Psychol Med. 21:1991;855-866.
    • (1991) Psychol Med , vol.21 , pp. 855-866
    • Harrison, P.J.1    Barton, A.J.2    Najlerahim, A.3    McDonald, B.4    Pearson, R.C.5
  • 11
    • 0028178079 scopus 로고
    • The effects of Alzheimer's disease, other dementias, and premortem course on beta-amyloid precursor protein messenger RNA in frontal cortex
    • Harrison P.J., Barton A.J., Procter A.W., Bowen D.M., Pearson R.C. The effects of Alzheimer's disease, other dementias, and premortem course on beta-amyloid precursor protein messenger RNA in frontal cortex. J Neurochem. 62:1994;635-644.
    • (1994) J Neurochem , vol.62 , pp. 635-644
    • Harrison, P.J.1    Barton, A.J.2    Procter, A.W.3    Bowen, D.M.4    Pearson, R.C.5
  • 12
    • 0028845078 scopus 로고
    • The relative importance of premortem acidosis and postmortem interval for human brain gene expression studies: Selective mRNA vulnerability and comparison with their encoded proteins
    • Harrison P.J., Heath P.R., Eastwood S.L., Burnet P.W., McDonald B., Pearson R.C. The relative importance of premortem acidosis and postmortem interval for human brain gene expression studies Selective mRNA vulnerability and comparison with their encoded proteins . Neurosci Lett. 200:1995;151-154.
    • (1995) Neurosci Lett , vol.200 , pp. 151-154
    • Harrison, P.J.1    Heath, P.R.2    Eastwood, S.L.3    Burnet, P.W.4    McDonald, B.5    Pearson, R.C.6
  • 14
    • 0036808553 scopus 로고    scopus 로고
    • MRNA stability and the control of gene expression: Implications for human disease
    • Hollams E.M., Giles K.M., Thomson A.M., Leedman P.J. MRNA stability and the control of gene expression Implications for human disease . Neurochem Res. 27:2002;957-980.
    • (2002) Neurochem Res , vol.27 , pp. 957-980
    • Hollams, E.M.1    Giles, K.M.2    Thomson, A.M.3    Leedman, P.J.4
  • 15
    • 0037998074 scopus 로고    scopus 로고
    • Biochemical and molecular studies using human autopsy brain tissue
    • Hynd M.R., Lewohl J.M., Scott H.L., Dodd P.R. Biochemical and molecular studies using human autopsy brain tissue. J Neurochem. 85:2003;543-562.
    • (2003) J Neurochem , vol.85 , pp. 543-562
    • Hynd, M.R.1    Lewohl, J.M.2    Scott, H.L.3    Dodd, P.R.4
  • 17
    • 0022491546 scopus 로고
    • Extensive postmortem stability of RNA from rat and human brain
    • Johnson S.A., Morgan D.G., Finch C.E. Extensive postmortem stability of RNA from rat and human brain. J Neurosci Res. 16:1986;267-280.
    • (1986) J Neurosci Res , vol.16 , pp. 267-280
    • Johnson, S.A.1    Morgan, D.G.2    Finch, C.E.3
  • 18
    • 0030668729 scopus 로고    scopus 로고
    • Multivariate analysis of RNA levels from postmortem human brains as measured by three different methods of RT-PCR. Stanley Neuropathology Consortium
    • Johnston N.L., Cervenak J., Shore A.D., Torrey E.F., Yolken R.H., Cerevnak J. Multivariate analysis of RNA levels from postmortem human brains as measured by three different methods of RT-PCR. Stanley Neuropathology Consortium. J Neurosci Methods. 77:1997;83-92.
    • (1997) J Neurosci Methods , vol.77 , pp. 83-92
    • Johnston, N.L.1    Cervenak, J.2    Shore, A.D.3    Torrey, E.F.4    Yolken, R.H.5    Cerevnak, J.6
  • 20
    • 0000847978 scopus 로고    scopus 로고
    • Gene-expression profile of the ageing brain in mice
    • Lee C.K., Weindruch R., Prolla T.A. Gene-expression profile of the ageing brain in mice. Nat Genet. 25:2000;294-297.
    • (2000) Nat Genet , vol.25 , pp. 294-297
    • Lee, C.K.1    Weindruch, R.2    Prolla, T.A.3
  • 22
    • 0025329364 scopus 로고
    • Amoxapine overdose: Recovery after severe metabolic acidosis (pH 6.69) and status epilepticus
    • Miller M.T., Sleigh J., Rawlinson F., de Jongh R., Godwin Y. Amoxapine overdose Recovery after severe metabolic acidosis (pH 6.69) and status epilepticus . Anaesth Intensive Care. 18:1990;246-248.
    • (1990) Anaesth Intensive Care , vol.18 , pp. 246-248
    • Miller, M.T.1    Sleigh, J.2    Rawlinson, F.3    De Jongh, R.4    Godwin, Y.5
  • 23
    • 0035426751 scopus 로고    scopus 로고
    • Analysis of complex brain disorders with gene expression microarrays: Schizophrenia as a disease of the synapse
    • Mirnics K., Middleton F.A., Lewis D.A., Levitt P. Analysis of complex brain disorders with gene expression microarrays Schizophrenia as a disease of the synapse . Trends Neurosci. 24:2001;479-486.
    • (2001) Trends Neurosci , vol.24 , pp. 479-486
    • Mirnics, K.1    Middleton, F.A.2    Lewis, D.A.3    Levitt, P.4
  • 24
    • 0019880963 scopus 로고
    • The isolation and in vitro translation of undegraded messenger RNAs from human postmortem brain
    • Morrison M.R., Griffin W.S. The isolation and in vitro translation of undegraded messenger RNAs from human postmortem brain. Anal Biochem. 113:1981;318-324.
    • (1981) Anal Biochem , vol.113 , pp. 318-324
    • Morrison, M.R.1    Griffin, W.S.2
  • 25
    • 0028801661 scopus 로고
    • Heat-shock 70 messenger RNA levels in human brain: Correlation with agonal fever
    • Morrison-Bogorad M., Zimmerman A.L., Pardue S. Heat-shock 70 messenger RNA levels in human brain Correlation with agonal fever . J Neurochem. 64:1995;235-246.
    • (1995) J Neurochem , vol.64 , pp. 235-246
    • Morrison-Bogorad, M.1    Zimmerman, A.L.2    Pardue, S.3
  • 27
    • 0028639450 scopus 로고
    • Selective postmortem degradation of inducible heat shock protein 70 (hsp70) mRNAs in rat brain
    • Pardue S., Zimmerman A.L., Morrison-Bogorad M. Selective postmortem degradation of inducible heat shock protein 70 (hsp70) mRNAs in rat brain. Cell Mol Neurobiol. 14:1994;341-357.
    • (1994) Cell Mol Neurobiol , vol.14 , pp. 341-357
    • Pardue, S.1    Zimmerman, A.L.2    Morrison-Bogorad, M.3
  • 28
    • 0023908354 scopus 로고
    • Characterisation of messenger RNA extracted post-mortem from the brains of schizophrenic, depressed and control subjects
    • Perrett C.W., Marchbanks R.M., Whatley S.A. Characterisation of messenger RNA extracted post-mortem from the brains of schizophrenic, depressed and control subjects. J Neurol Neurosurg Psychiatry. 51:1988;325-331.
    • (1988) J Neurol Neurosurg Psychiatry , vol.51 , pp. 325-331
    • Perrett, C.W.1    Marchbanks, R.M.2    Whatley, S.A.3
  • 29
    • 0026619925 scopus 로고
    • Brain banking and the human hypothalamus - Factors to match for, pitfalls and potentials
    • Ravid R., Van Zwieten E.J., Swaab D.F. Brain banking and the human hypothalamus - factors to match for, pitfalls and potentials. Prog Brain Res. 93:1992;83-95.
    • (1992) Prog Brain Res , vol.93 , pp. 83-95
    • Ravid, R.1    Van Zwieten, E.J.2    Swaab, D.F.3
  • 30
    • 0035150395 scopus 로고    scopus 로고
    • Prolonged coma and loss of brainstem reflexes following amitriptyline overdose
    • Roberge R.J., Krenzelok E.P. Prolonged coma and loss of brainstem reflexes following amitriptyline overdose. Vet Hum Toxicol. 43:2001;42-44.
    • (2001) Vet Hum Toxicol , vol.43 , pp. 42-44
    • Roberge, R.J.1    Krenzelok, E.P.2
  • 31
    • 0015466950 scopus 로고
    • The presence of biologically labile compounds during ischemia and their relationship to the EEG in rat cerebral cortex and hypothalamus
    • Swaab D.F., Boer K. The presence of biologically labile compounds during ischemia and their relationship to the EEG in rat cerebral cortex and hypothalamus. J Neurochem. 19:1972;2843-2853.
    • (1972) J Neurochem , vol.19 , pp. 2843-2853
    • Swaab, D.F.1    Boer, K.2
  • 32
    • 0037189054 scopus 로고    scopus 로고
    • Stability of gene expression in postmortem brain revealed by cDNA gene array analysis
    • Trotter S.A., Brill L.B. 2nd, Bennett J.P. Jr. Stability of gene expression in postmortem brain revealed by cDNA gene array analysis. Brain Res. 942:2002;120-123.
    • (2002) Brain Res , vol.942 , pp. 120-123
    • Trotter, S.A.1    Brill II, L.B.2    Bennett Jr., J.P.3
  • 34
    • 10744226630 scopus 로고    scopus 로고
    • Gender specific gene expression in postmortem human brain: Localization to sex chromosomes
    • Advance online publication October 29, 2003; doi:10.1038/sj.npp.1300337. Accessed on December 5, 2003
    • Vawter M., Evans S.J., Choudary P.V., Tomita H., Woodruff J.M., Molnar M., et al. Gender specific gene expression in postmortem human brain Localization to sex chromosomes . Neuropsychopharmacology. 2003;. Advance online publication October 29, 2003; doi:10.1038/sj.npp.1300337. Accessed on December 5, 2003.
    • (2003) Neuropsychopharmacology
    • Vawter, M.1    Evans, S.J.2    Choudary, P.V.3    Tomita, H.4    Woodruff, J.M.5    Molnar, M.6
  • 35
    • 0022125775 scopus 로고
    • Agonal status affects the metabolic activity of nerve endings isolated from postmortem human brain
    • Wester P., Bateman D.E., Dodd P.R., Edwardson J.A., Hardy J.A., Kidd A.M., et al. Agonal status affects the metabolic activity of nerve endings isolated from postmortem human brain. Neurochem Pathol. 3:1985;169-180.
    • (1985) Neurochem Pathol , vol.3 , pp. 169-180
    • Wester, P.1    Bateman, D.E.2    Dodd, P.R.3    Edwardson, J.A.4    Hardy, J.A.5    Kidd, A.M.6
  • 36
    • 0033806831 scopus 로고    scopus 로고
    • Measurements of cortical cellular pH by intracranial tonometer in severe head injury
    • Yokota H., Yamamoto Y., Naoe Y., Fuse A., Sato H., Unemoto K., et al. Measurements of cortical cellular pH by intracranial tonometer in severe head injury. Crit Care Med. 28:2000;3275-3280.
    • (2000) Crit Care Med , vol.28 , pp. 3275-3280
    • Yokota, H.1    Yamamoto, Y.2    Naoe, Y.3    Fuse, A.4    Sato, H.5    Unemoto, K.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.