메뉴 건너뛰기




Volumn 177, Issue 2, 2007, Pages 749-760

Natural variation for alleles under epigenetic control by the maize chromomethylase Zmet2

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOMETHYLASE ZMET2; DNA METHYLTRANSFERASE; UNCLASSIFIED DRUG;

EID: 35549010557     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.107.072702     Document Type: Article
Times cited : (27)

References (46)
  • 1
    • 0037121952 scopus 로고    scopus 로고
    • HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by double-stranded RNA
    • AUFSATZ, W., M. F. METTE, J. VAN DER WINDEN, M. MATZKE and A. J. MATZKE, 2002 HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by double-stranded RNA. EMBO J. 21: 6832-6841.
    • (2002) EMBO J , vol.21 , pp. 6832-6841
    • AUFSATZ, W.1    METTE, M.F.2    VAN DER WINDEN, J.3    MATZKE, M.4    MATZKE, A.J.5
  • 2
    • 0035878120 scopus 로고    scopus 로고
    • Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene
    • BARTEE, L., F. MALAGNAC and J. BENDER, 2001 Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene. Genes Dev. 15: 1753-1758.
    • (2001) Genes Dev , vol.15 , pp. 1753-1758
    • BARTEE, L.1    MALAGNAC, F.2    BENDER, J.3
  • 3
    • 0028885673 scopus 로고
    • Epigenetic control of an endogenous gene family is revealed by a novel blue fluorescent mutant of Arabidopsis
    • BENDER, J., and G. R. FINK, 1995 Epigenetic control of an endogenous gene family is revealed by a novel blue fluorescent mutant of Arabidopsis. Cell 83: 725-734.
    • (1995) Cell , vol.83 , pp. 725-734
    • BENDER, J.1    FINK, G.R.2
  • 6
    • 0037058968 scopus 로고    scopus 로고
    • Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
    • CAO, X., and S. E. JACOBSEN, 2002a Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc. Natl. Acad. Sci. USA 99(Suppl. 4): 16491-16498.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , Issue.SUPPL. 4 , pp. 16491-16498
    • CAO, X.1    JACOBSEN, S.E.2
  • 7
    • 0037046810 scopus 로고    scopus 로고
    • Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
    • CAO, X., and S. E. JACOBSEN, 2002b Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr. Biol. 12: 1138-1144.
    • (2002) Curr. Biol , vol.12 , pp. 1138-1144
    • CAO, X.1    JACOBSEN, S.E.2
  • 9
    • 0347033302 scopus 로고    scopus 로고
    • Role of the DRM and CMT3 methyltransferases in RNAdirected DNA methylation
    • CAO, X., W. AUFSATZ, D. ZILBERMAN, M. F. METTE, M. S. HUANG et al., 2003 Role of the DRM and CMT3 methyltransferases in RNAdirected DNA methylation. Curr. Biol. 13: 2212-2217.
    • (2003) Curr. Biol , vol.13 , pp. 2212-2217
    • CAO, X.1    AUFSATZ, W.2    ZILBERMAN, D.3    METTE, M.F.4    HUANG, M.S.5
  • 11
    • 17744364327 scopus 로고    scopus 로고
    • Gardening the genome: DNA methylation in Arabidopsis thaliana
    • CHAN, S. W., I. R. HENDERSON and S. E. JACOBSEN, 2005 Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat. Rev. Genet. 6: 351-360.
    • (2005) Nat. Rev. Genet , vol.6 , pp. 351-360
    • CHAN, S.W.1    HENDERSON, I.R.2    JACOBSEN, S.E.3
  • 12
    • 33745726564 scopus 로고    scopus 로고
    • CHAN, S. W., I. R. HENDERSON, X. ZHANG, G. SHAH, J. S. CHIEN et al., 2006 RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNAmethylation in Arabidopsis. PLoS Genet. 2: e83.
    • CHAN, S. W., I. R. HENDERSON, X. ZHANG, G. SHAH, J. S. CHIEN et al., 2006 RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNAmethylation in Arabidopsis. PLoS Genet. 2: e83.
  • 13
    • 3042801584 scopus 로고    scopus 로고
    • Chromatin conversations: Mechanisms and implications of paramutation
    • CHANDLER, V. L., and M. STAM, 2004 Chromatin conversations: mechanisms and implications of paramutation. Nat. Rev. Genet. 5: 532-544.
    • (2004) Nat. Rev. Genet , vol.5 , pp. 532-544
    • CHANDLER, V.L.1    STAM, M.2
  • 15
    • 0033539183 scopus 로고    scopus 로고
    • An epigenetic mutation responsible for natural variation in floral symmetry
    • CUBAS, P., C. VINCENT and E. COEN, 1999 An epigenetic mutation responsible for natural variation in floral symmetry. Nature 401: 157-161.
    • (1999) Nature , vol.401 , pp. 157-161
    • CUBAS, P.1    VINCENT, C.2    COEN, E.3
  • 16
    • 33745454548 scopus 로고    scopus 로고
    • Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
    • EBBS, M. L., and J. BENDER, 2006 Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell 18: 1166-1176.
    • (2006) Plant Cell , vol.18 , pp. 1166-1176
    • EBBS, M.L.1    BENDER, J.2
  • 17
    • 0027159975 scopus 로고
    • Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thaliana
    • FINNEGAN, E. J., and E. S. DENNIS, 1993 Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thaliana. Nucleic Acids Res. 21: 2383-2388.
    • (1993) Nucleic Acids Res , vol.21 , pp. 2383-2388
    • FINNEGAN, E.J.1    DENNIS, E.S.2
  • 18
    • 0037047037 scopus 로고    scopus 로고
    • Intraspecific violation of genetic colinearity and its implications in maize
    • FU, H., and H. K. DOONER, 2002 Intraspecific violation of genetic colinearity and its implications in maize. Proc. Natl. Acad. Sci. USA 99: 9573-9578.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 9573-9578
    • FU, H.1    DOONER, H.K.2
  • 19
    • 24744442994 scopus 로고    scopus 로고
    • Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes
    • FU, Y., S. J. EMRICH, L. GUO, T. J. WEN, D. A. ASHLOCK et al., 2005 Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes. Proc. Natl. Acad. Sci. USA 102: 12282-12287.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 12282-12287
    • FU, Y.1    EMRICH, S.J.2    GUO, L.3    WEN, T.J.4    ASHLOCK, D.A.5
  • 20
    • 33846636966 scopus 로고    scopus 로고
    • Design, production, and utilization of long oligonucleotide microarrays for expression analysis in maize
    • GARDINER, J. M., C. R. BUELL, R. ELUMALAI, D. W. GALBRAITH, D. A. HENDERSON et al., 2005 Design, production, and utilization of long oligonucleotide microarrays for expression analysis in maize. Maydica 50: 425-435.
    • (2005) Maydica , vol.50 , pp. 425-435
    • GARDINER, J.M.1    BUELL, C.R.2    ELUMALAI, R.3    GALBRAITH, D.W.4    HENDERSON, D.A.5
  • 22
    • 33846061294 scopus 로고    scopus 로고
    • Genomic imprinting, methylation and molecular evolution of maize Enhancer of zeste (Mez) homologs
    • HAUN, W. J., S. LAOUEILLE-DUPRAT, J. O'CONNELL, M. C. SPILLANE, U. GROSSNIKLAUS et al., 2007 Genomic imprinting, methylation and molecular evolution of maize Enhancer of zeste (Mez) homologs. Plant J. 49: 325-337.
    • (2007) Plant J , vol.49 , pp. 325-337
    • HAUN, W.J.1    LAOUEILLE-DUPRAT, S.2    O'CONNELL, J.3    SPILLANE, M.C.4    GROSSNIKLAUS, U.5
  • 23
    • 0031832432 scopus 로고    scopus 로고
    • A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis
    • HENIKOFF, S., and L. COMAI, 1998 A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis. Genetics 149: 307-318.
    • (1998) Genetics , vol.149 , pp. 307-318
    • HENIKOFF, S.1    COMAI, L.2
  • 24
    • 0037041422 scopus 로고    scopus 로고
    • Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
    • JACKSON, J. P., A. M. LINDROTH, X. CAO and S. E. JACOBSEN, 2002 Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature 416: 556-560.
    • (2002) Nature , vol.416 , pp. 556-560
    • JACKSON, J.P.1    LINDROTH, A.M.2    CAO, X.3    JACOBSEN, S.E.4
  • 25
    • 0032907728 scopus 로고    scopus 로고
    • Maintenance of genomic methylation requires a SWI2/SNF2-like protein
    • JEDDELOH, J. A., T. L. STOKES and E. J. RICHARDS, 1999 Maintenance of genomic methylation requires a SWI2/SNF2-like protein. Nat. Genet. 22: 94-97.
    • (1999) Nat. Genet , vol.22 , pp. 94-97
    • JEDDELOH, J.A.1    STOKES, T.L.2    RICHARDS, E.J.3
  • 26
    • 2942598781 scopus 로고    scopus 로고
    • Epialleles via DNA methylation: Consequences for plant evolution
    • KALISZ, S., and M. D. PURUGGANAN, 2004 Epialleles via DNA methylation: consequences for plant evolution. Trends Ecol. Evol. 19: 309-314.
    • (2004) Trends Ecol. Evol , vol.19 , pp. 309-314
    • KALISZ, S.1    PURUGGANAN, M.D.2
  • 28
    • 0037418586 scopus 로고    scopus 로고
    • Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis
    • KATO, M., A. MIURA, J. BENDER, S. E. JACOBSEN and T. KAKUTANI, 2003 Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Curr. Biol. 13: 421-426.
    • (2003) Curr. Biol , vol.13 , pp. 421-426
    • KATO, M.1    MIURA, A.2    BENDER, J.3    JACOBSEN, S.E.4    KAKUTANI, T.5
  • 29
    • 0036010768 scopus 로고    scopus 로고
    • Expanding the genetic map of maize with the intermated B73 x Mo17 (IBM) population
    • LEE, M., N. SHAROPOVA, W. D. BEAVIS, D. GRANT, M. KATT et al., 2002 Expanding the genetic map of maize with the intermated B73 x Mo17 (IBM) population. Plant Mol. Biol. 48: 453-461.
    • (2002) Plant Mol. Biol , vol.48 , pp. 453-461
    • LEE, M.1    SHAROPOVA, N.2    BEAVIS, W.D.3    GRANT, D.4    KATT, M.5
  • 30
    • 0035874929 scopus 로고    scopus 로고
    • Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
    • LINDROTH, A. M., X. CAO, J. P. JACKSON, D. ZILBERMAN, C. M. MCCALLUM et al., 2001 Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science 292: 2077-2080.
    • (2001) Science , vol.292 , pp. 2077-2080
    • LINDROTH, A.M.1    CAO, X.2    JACKSON, J.P.3    ZILBERMAN, D.4    MCCALLUM, C.M.5
  • 31
    • 12244271065 scopus 로고    scopus 로고
    • An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation
    • MALAGNAC, F., L. BARTEE and J. BENDER, 2002 An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation. EMBO J. 21: 6842-6852.
    • (2002) EMBO J , vol.21 , pp. 6842-6852
    • MALAGNAC, F.1    BARTEE, L.2    BENDER, J.3
  • 32
    • 33746513103 scopus 로고    scopus 로고
    • A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening
    • MANNING, K., M. TOR, M. POOLE, Y. HONG, A. J. THOMPSON et al., 2006 A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. Nat. Genet. 38: 948-952.
    • (2006) Nat. Genet , vol.38 , pp. 948-952
    • MANNING, K.1    TOR, M.2    POOLE, M.3    HONG, Y.4    THOMPSON, A.J.5
  • 33
    • 0032751471 scopus 로고    scopus 로고
    • Epigenetic inheritance at the agouti locus in the mouse
    • MORGAN, H. D., H. G. SUTHERLAND, D. I. MARTIN and E. WHITELAW, 1999 Epigenetic inheritance at the agouti locus in the mouse. Nat. Genet. 23: 314-318.
    • (1999) Nat. Genet , vol.23 , pp. 314-318
    • MORGAN, H.D.1    SUTHERLAND, H.G.2    MARTIN, D.I.3    WHITELAW, E.4
  • 34
    • 0034872980 scopus 로고    scopus 로고
    • Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation
    • PAPA, C. M., N. M. SPRINGER, M. G. MUSZYNSKI, R. MEELEY and S. M. KAEPPLER, 2001 Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation. Plant Cell 13: 1919-1928.
    • (2001) Plant Cell , vol.13 , pp. 1919-1928
    • PAPA, C.M.1    SPRINGER, N.M.2    MUSZYNSKI, M.G.3    MEELEY, R.4    KAEPPLER, S.M.5
  • 35
    • 33645775498 scopus 로고    scopus 로고
    • RANGWALA, S. H., R. ELUMALAI, C. VANIER, H. OZKAN, D. W. GALBRAITH et al., 2006 Meiotically stable natural epialleles of Sadhu, a novel Arabidopsis retroposon. PLoS Genet. 2: e36.
    • RANGWALA, S. H., R. ELUMALAI, C. VANIER, H. OZKAN, D. W. GALBRAITH et al., 2006 Meiotically stable natural epialleles of Sadhu, a novel Arabidopsis retroposon. PLoS Genet. 2: e36.
  • 36
    • 33646193822 scopus 로고    scopus 로고
    • Inherited epigenetic variation: Revisiting soft inheritance
    • RICHARDS, E. J., 2006 Inherited epigenetic variation: revisiting soft inheritance. Nat. Rev. Genet. 7: 395-401.
    • (2006) Nat. Rev. Genet , vol.7 , pp. 395-401
    • RICHARDS, E.J.1
  • 37
    • 14644415590 scopus 로고    scopus 로고
    • Genetic variation in epigenetic inheritance of ribosomal RNA gene methylation in Arabidopsis
    • RIDDLE, N. C., and E. J. RICHARDS, 2005 Genetic variation in epigenetic inheritance of ribosomal RNA gene methylation in Arabidopsis. Plant J. 41: 524-532.
    • (2005) Plant J , vol.41 , pp. 524-532
    • RIDDLE, N.C.1    RICHARDS, E.J.2
  • 38
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • ROZEN, S., and H. SKALETSKY, 2000 Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132: 365-386.
    • (2000) Methods Mol. Biol , vol.132 , pp. 365-386
    • ROZEN, S.1    SKALETSKY, H.2
  • 39
    • 0021695885 scopus 로고
    • Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics
    • SAGHAI-MAROOF, M. A., K. M. SOLIMAN, R. A. JORGENSEN and R. W. ALLARD, 1984 Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. USA 81: 8014-8018.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 8014-8018
    • SAGHAI-MAROOF, M.A.1    SOLIMAN, K.M.2    JORGENSEN, R.A.3    ALLARD, R.W.4
  • 40
    • 4544341015 scopus 로고    scopus 로고
    • SMYTH, G. K., 2004 Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3: Article3.
    • SMYTH, G. K., 2004 Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3: Article3.
  • 41
    • 0037080492 scopus 로고    scopus 로고
    • Epigenetic variation in Arabidopsis disease resistance
    • STOKES, T. L., B. N. KUNKEL and E. J. RICHARDS, 2002 Epigenetic variation in Arabidopsis disease resistance. Genes Dev. 16: 171-182.
    • (2002) Genes Dev , vol.16 , pp. 171-182
    • STOKES, T.L.1    KUNKEL, B.N.2    RICHARDS, E.J.3
  • 43
    • 0037039164 scopus 로고    scopus 로고
    • Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3
    • TOMPA, R., C. M. MCCALLUM, J. DELROW, J. G. HENIKOFF, B. VAN STEENSEL et al., 2002 Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3. Curr. Biol. 12: 65-68.
    • (2002) Curr. Biol , vol.12 , pp. 65-68
    • TOMPA, R.1    MCCALLUM, C.M.2    DELROW, J.3    HENIKOFF, J.G.4    VAN STEENSEL, B.5
  • 45
    • 33745466921 scopus 로고    scopus 로고
    • DNA methylation is critical for Arabidopsis embryogenesis and seed viability
    • XIAO, W., K. D. CUSTARD, R. C. BROWN, B. E. LEMMON, J. J. HARADA et al., 2006 DNA methylation is critical for Arabidopsis embryogenesis and seed viability. Plant Cell 18: 805-814.
    • (2006) Plant Cell , vol.18 , pp. 805-814
    • XIAO, W.1    CUSTARD, K.D.2    BROWN, R.C.3    LEMMON, B.E.4    HARADA, J.J.5
  • 46
    • 0037474126 scopus 로고    scopus 로고
    • ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
    • ZILBERMAN, D., X. CAO and S. E. JACOBSEN, 2003 ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science 299: 716-719.
    • (2003) Science , vol.299 , pp. 716-719
    • ZILBERMAN, D.1    CAO, X.2    JACOBSEN, S.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.