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Volumn 7, Issue 9, 2011, Pages

Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; B3GALTL GENE; CONTROLLED STUDY; DNA FLANKING REGION; DNA METHYLATION; EARLY TRANSPOSON; EMBRYO; EMBRYONIC STEM CELL; GENE; GENETIC POLYMORPHISM; HETEROCHROMATIN; INTRACISTERNAL A TYPE PARTICLE ELEMENT; LONG INTERSPERSED NUCLEAR ELEMENT; MOUSE; NONHUMAN; RETROPOSON; TRANSCRIPTION INITIATION SITE; ANIMAL; CELL LINE; CHROMATIN IMMUNOPRECIPITATION; CYTOLOGY; GENE EXPRESSION REGULATION; GENE SILENCING; GENETIC EPIGENESIS; GENETICS; LONG INTERSPERSED REPEAT; METABOLISM;

EID: 80053454411     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1002301     Document Type: Article
Times cited : (119)

References (82)
  • 1
    • 33749522239 scopus 로고    scopus 로고
    • Genetics: junk DNA as an evolutionary force
    • Biemont C, Vieira C, (2006) Genetics: junk DNA as an evolutionary force. Nature 443: 521-524.
    • (2006) Nature , vol.443 , pp. 521-524
    • Biemont, C.1    Vieira, C.2
  • 2
    • 77952487819 scopus 로고    scopus 로고
    • Jumping genes and epigenetics: Towards new species
    • Rebollo R, Horard B, Hubert B, Vieira C, (2010) Jumping genes and epigenetics: Towards new species. Gene 454: 1-7.
    • (2010) Gene , vol.454 , pp. 1-7
    • Rebollo, R.1    Horard, B.2    Hubert, B.3    Vieira, C.4
  • 3
    • 33846704345 scopus 로고    scopus 로고
    • Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity
    • Hedges DJ, Deininger PL, (2007) Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity. Mutat Res 616: 46-59.
    • (2007) Mutat Res , vol.616 , pp. 46-59
    • Hedges, D.J.1    Deininger, P.L.2
  • 4
    • 42349096534 scopus 로고    scopus 로고
    • Transposable elements and the evolution of regulatory networks
    • Feschotte C, (2008) Transposable elements and the evolution of regulatory networks. Nat Rev Genet 9: 397-405.
    • (2008) Nat Rev Genet , vol.9 , pp. 397-405
    • Feschotte, C.1
  • 5
    • 0033607206 scopus 로고    scopus 로고
    • Evidence for the recent horizontal transfer of long terminal repeat retrotransposon
    • Jordan IK, Matyunina LV, McDonald JF, (1999) Evidence for the recent horizontal transfer of long terminal repeat retrotransposon. Proc Natl Acad Sci U S A 96: 12621-12625.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 12621-12625
    • Jordan, I.K.1    Matyunina, L.V.2    McDonald, J.F.3
  • 6
    • 0031662164 scopus 로고    scopus 로고
    • Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
    • Walsh CP, Chaillet JR, Bestor TH, (1998) Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. Nat Genet 20: 116-117.
    • (1998) Nat Genet , vol.20 , pp. 116-117
    • Walsh, C.P.1    Chaillet, J.R.2    Bestor, T.H.3
  • 7
    • 4544223707 scopus 로고    scopus 로고
    • Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L
    • Bourc'his D, Bestor TH, (2004) Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L. Nature 431: 96-99.
    • (2004) Nature , vol.431 , pp. 96-99
    • Bourc'his, D.1    Bestor, T.H.2
  • 8
    • 84891713248 scopus 로고    scopus 로고
    • Epigenomic consequences of immortalized plant cell suspension culture
    • doi:10.1371/journal.pbio.0060302
    • Tanurdzic M, Vaughn MW, Jiang H, Lee TJ, Slotkin RK, et al. (2008) Epigenomic consequences of immortalized plant cell suspension culture. PLoS Biol 6: e302 doi:10.1371/journal.pbio.0060302.
    • (2008) PLoS Biol , vol.6
    • Tanurdzic, M.1    Vaughn, M.W.2    Jiang, H.3    Lee, T.J.4    Slotkin, R.K.5
  • 9
    • 34548784928 scopus 로고    scopus 로고
    • Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline
    • Klenov MS, Lavrov SA, Stolyarenko AD, Ryazansky SS, Aravin AA, et al. (2007) Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline. Nucleic Acids Res 35: 5430-5438.
    • (2007) Nucleic Acids Res , vol.35 , pp. 5430-5438
    • Klenov, M.S.1    Lavrov, S.A.2    Stolyarenko, A.D.3    Ryazansky, S.S.4    Aravin, A.A.5
  • 10
    • 65549105694 scopus 로고    scopus 로고
    • Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary
    • Malone CD, Brennecke J, Dus M, Stark A, McCombie WR, et al. (2009) Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary. Cell 137: 522-535.
    • (2009) Cell , vol.137 , pp. 522-535
    • Malone, C.D.1    Brennecke, J.2    Dus, M.3    Stark, A.4    McCombie, W.R.5
  • 11
    • 75849124607 scopus 로고    scopus 로고
    • The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila
    • Fagegaltier D, Bouge AL, Berry B, Poisot E, Sismeiro O, et al. (2009) The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila. Proc Natl Acad Sci U S A 106: 21258-21263.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 21258-21263
    • Fagegaltier, D.1    Bouge, A.L.2    Berry, B.3    Poisot, E.4    Sismeiro, O.5
  • 12
    • 34547624303 scopus 로고    scopus 로고
    • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    • Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, et al. (2007) Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448: 553-560.
    • (2007) Nature , vol.448 , pp. 553-560
    • Mikkelsen, T.S.1    Ku, M.2    Jaffe, D.B.3    Issac, B.4    Lieberman, E.5
  • 13
    • 15444372817 scopus 로고    scopus 로고
    • The profile of repeat-associated histone lysine methylation states in the mouse epigenome
    • Martens JH, O'Sullivan RJ, Braunschweig U, Opravil S, Radolf M, et al. (2005) The profile of repeat-associated histone lysine methylation states in the mouse epigenome. EMBO J 24: 800-812.
    • (2005) EMBO J , vol.24 , pp. 800-812
    • Martens, J.H.1    O'Sullivan, R.J.2    Braunschweig, U.3    Opravil, S.4    Radolf, M.5
  • 14
    • 77950862656 scopus 로고    scopus 로고
    • Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET
    • Matsui T, Leung D, Miyashita H, Maksakova IA, Miyachi H, et al. (2010) Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET. Nature 464: 927-931.
    • (2010) Nature , vol.464 , pp. 927-931
    • Matsui, T.1    Leung, D.2    Miyashita, H.3    Maksakova, I.A.4    Miyachi, H.5
  • 15
    • 74549116659 scopus 로고    scopus 로고
    • KAP1 controls endogenous retroviruses in embryonic stem cells
    • Rowe HM, Jakobsson J, Mesnard D, Rougemont J, Reynard S, et al. (2010) KAP1 controls endogenous retroviruses in embryonic stem cells. Nature 463: 237-240.
    • (2010) Nature , vol.463 , pp. 237-240
    • Rowe, H.M.1    Jakobsson, J.2    Mesnard, D.3    Rougemont, J.4    Reynard, S.5
  • 16
    • 79957844585 scopus 로고    scopus 로고
    • DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements and chimaeric transcripts in mouse ES cells
    • Karimi MM, Goyal P, Maksakova IA, Bilenky M, Leung D, et al. (2011) DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements and chimaeric transcripts in mouse ES cells. Cell Stem Cell 8: 676-687.
    • (2011) Cell Stem Cell , vol.8 , pp. 676-687
    • Karimi, M.M.1    Goyal, P.2    Maksakova, I.A.3    Bilenky, M.4    Leung, D.5
  • 17
    • 38949130541 scopus 로고    scopus 로고
    • Molecular landscape of modified histones in Drosophila heterochromatic genes and euchromatin-heterochromatin transition zones
    • doi:10.1371/journal.pgen.0040016
    • Yasuhara JC, Wakimoto BT, (2008) Molecular landscape of modified histones in Drosophila heterochromatic genes and euchromatin-heterochromatin transition zones. PLoS Genet 4: e16 doi:10.1371/journal.pgen.0040016.
    • (2008) PLoS Genet , vol.4
    • Yasuhara, J.C.1    Wakimoto, B.T.2
  • 18
    • 0029002509 scopus 로고
    • Transposable elements are stable structural components of Drosophila melanogaster heterochromatin
    • Pimpinelli S, Berloco M, Fanti L, Dimitri P, Bonaccorsi S, et al. (1995) Transposable elements are stable structural components of Drosophila melanogaster heterochromatin. Proc Natl Acad Sci U S A 92: 3804-3808.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 3804-3808
    • Pimpinelli, S.1    Berloco, M.2    Fanti, L.3    Dimitri, P.4    Bonaccorsi, S.5
  • 20
    • 68549094440 scopus 로고    scopus 로고
    • Are transposable elements simply silenced or are they under house arrest?
    • Biemont C, (2009) Are transposable elements simply silenced or are they under house arrest? Trends Genet 25: 333-334.
    • (2009) Trends Genet , vol.25 , pp. 333-334
    • Biemont, C.1
  • 21
    • 33847198958 scopus 로고    scopus 로고
    • Sleeping beauty transposase has an affinity for heterochromatin conformation
    • Ikeda R, Kokubu C, Yusa K, Keng VW, Horie K, et al. (2007) Sleeping beauty transposase has an affinity for heterochromatin conformation. Mol Cell Biol 27: 1665-1676.
    • (2007) Mol Cell Biol , vol.27 , pp. 1665-1676
    • Ikeda, R.1    Kokubu, C.2    Yusa, K.3    Keng, V.W.4    Horie, K.5
  • 23
    • 34447328702 scopus 로고    scopus 로고
    • Phosphorylation regulates integration of the yeast Ty5 retrotransposon into heterochromatin
    • Dai J, Xie W, Brady TL, Gao J, Voytas DF, (2007) Phosphorylation regulates integration of the yeast Ty5 retrotransposon into heterochromatin. Mol Cell 27: 289-299.
    • (2007) Mol Cell , vol.27 , pp. 289-299
    • Dai, J.1    Xie, W.2    Brady, T.L.3    Gao, J.4    Voytas, D.F.5
  • 24
    • 0028286165 scopus 로고
    • Expansions of transgene repeats cause heterochromatin formation and gene silencing in Drosophila
    • Dorer DR, Henikoff S, (1994) Expansions of transgene repeats cause heterochromatin formation and gene silencing in Drosophila. Cell 77: 993-1002.
    • (1994) Cell , vol.77 , pp. 993-1002
    • Dorer, D.R.1    Henikoff, S.2
  • 26
    • 0035099510 scopus 로고    scopus 로고
    • Impact of multiple insertions of two retroelements, ZAM and Idefix at an euchromatic locus
    • Conte C, Calco V, Desset S, Leblanc P, Dastugue B, et al. (2000) Impact of multiple insertions of two retroelements, ZAM and Idefix at an euchromatic locus. Genetica 109: 53-59.
    • (2000) Genetica , vol.109 , pp. 53-59
    • Conte, C.1    Calco, V.2    Desset, S.3    Leblanc, P.4    Dastugue, B.5
  • 27
    • 33749368402 scopus 로고    scopus 로고
    • Evidence of influence of genomic DNA sequence on human X chromosome inactivation
    • doi:10.1371/journal.pcbi.0020113
    • Wang Z, Willard HF, Mukherjee S, Furey TS, (2006) Evidence of influence of genomic DNA sequence on human X chromosome inactivation. PLoS Comput Biol 2: e113 doi:10.1371/journal.pcbi.0020113.
    • (2006) PLoS Comput Biol , vol.2
    • Wang, Z.1    Willard, H.F.2    Mukherjee, S.3    Furey, T.S.4
  • 28
    • 78049445877 scopus 로고    scopus 로고
    • Perturbation analysis of heterochromatin-mediated gene silencing and somatic inheritance
    • doi:10.1371/journal.pgen.1001095
    • Schneiderman JI, Goldstein S, Ahmad K, (2010) Perturbation analysis of heterochromatin-mediated gene silencing and somatic inheritance. PLoS Genet 6: e1001095 doi:10.1371/journal.pgen.1001095.
    • (2010) PLoS Genet , vol.6
    • Schneiderman, J.I.1    Goldstein, S.2    Ahmad, K.3
  • 29
    • 70350504436 scopus 로고    scopus 로고
    • A transposon-induced epigenetic change leads to sex determination in melon
    • Martin A, Troadec C, Boualem A, Rajab M, Fernandez R, et al. (2009) A transposon-induced epigenetic change leads to sex determination in melon. Nature 461: 1135-1138.
    • (2009) Nature , vol.461 , pp. 1135-1138
    • Martin, A.1    Troadec, C.2    Boualem, A.3    Rajab, M.4    Fernandez, R.5
  • 30
    • 40149098109 scopus 로고    scopus 로고
    • Genome-wide assessments reveal extremely high levels of polymorphism of two active families of mouse endogenous retroviral elements
    • doi:10.1371/journal.pgen.1000007
    • Zhang Y, Maksakova IA, Gagnier L, van de Lagemaat LN, Mager DL, (2008) Genome-wide assessments reveal extremely high levels of polymorphism of two active families of mouse endogenous retroviral elements. PLoS Genet 4: e1000007 doi:10.1371/journal.pgen.1000007.
    • (2008) PLoS Genet , vol.4
    • Zhang, Y.1    Maksakova, I.A.2    Gagnier, L.3    van de Lagemaat, L.N.4    Mager, D.L.5
  • 31
    • 75549090942 scopus 로고    scopus 로고
    • MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains
    • Akagi K, Stephens RM, Li J, Evdokimov E, Kuehn MR, et al. (2010) MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains. Nucleic Acids Res 38: D600-606.
    • (2010) Nucleic Acids Res , vol.38 , pp. 600-606
    • Akagi, K.1    Stephens, R.M.2    Li, J.3    Evdokimov, E.4    Kuehn, M.R.5
  • 32
  • 33
  • 34
    • 33645757337 scopus 로고    scopus 로고
    • Retroviral elements and their hosts: insertional mutagenesis in the mouse germ line
    • doi:10.1371/journal.pgen.0020002
    • Maksakova IA, Romanish MT, Gagnier L, Dunn CA, van de Lagemaat LN, et al. (2006) Retroviral elements and their hosts: insertional mutagenesis in the mouse germ line. PLoS Genet 2: e2 doi:10.1371/journal.pgen.0020002.
    • (2006) PLoS Genet , vol.2
    • Maksakova, I.A.1    Romanish, M.T.2    Gagnier, L.3    Dunn, C.A.4    van de Lagemaat, L.N.5
  • 35
    • 0033861696 scopus 로고    scopus 로고
    • Novel mouse type D endogenous proviruses and ETn elements share long terminal repeat and internal sequences
    • Mager DL, Freeman JD, (2000) Novel mouse type D endogenous proviruses and ETn elements share long terminal repeat and internal sequences. J Virol 74: 7221-7229.
    • (2000) J Virol , vol.74 , pp. 7221-7229
    • Mager, D.L.1    Freeman, J.D.2
  • 36
    • 8744304935 scopus 로고    scopus 로고
    • An active murine transposon family pair: retrotransposition of "master" MusD copies and ETn trans-mobilization
    • Ribet D, Dewannieux M, Heidmann T, (2004) An active murine transposon family pair: retrotransposition of "master" MusD copies and ETn trans-mobilization. Genome Res 14: 2261-2267.
    • (2004) Genome Res , vol.14 , pp. 2261-2267
    • Ribet, D.1    Dewannieux, M.2    Heidmann, T.3
  • 37
    • 65449172933 scopus 로고    scopus 로고
    • Preferential epigenetic suppression of the autonomous MusD over the nonautonomous ETn mouse retrotransposons
    • Maksakova IA, Zhang Y, Mager DL, (2009) Preferential epigenetic suppression of the autonomous MusD over the nonautonomous ETn mouse retrotransposons. Mol Cell Biol 29: 2456-2468.
    • (2009) Mol Cell Biol , vol.29 , pp. 2456-2468
    • Maksakova, I.A.1    Zhang, Y.2    Mager, D.L.3
  • 38
    • 0035674903 scopus 로고    scopus 로고
    • Biology of mammalian L1 retrotransposons
    • Ostertag EM, Kazazian HH Jr, (2001) Biology of mammalian L1 retrotransposons. Annu Rev Genet 35: 501-538.
    • (2001) Annu Rev Genet , vol.35 , pp. 501-538
    • Ostertag, E.M.1    Kazazian Jr., H.H.2
  • 39
    • 33646070846 scopus 로고    scopus 로고
    • A bivalent chromatin structure marks key developmental genes in embryonic stem cells
    • Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, et al. (2006) A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125: 315-326.
    • (2006) Cell , vol.125 , pp. 315-326
    • Bernstein, B.E.1    Mikkelsen, T.S.2    Xie, X.3    Kamal, M.4    Huebert, D.J.5
  • 40
    • 0036830642 scopus 로고    scopus 로고
    • Role of histone H3 lysine 27 methylation in Polycomb-group silencing
    • Cao R, Wang L, Wang H, Xia L, Erdjument-Bromage H, et al. (2002) Role of histone H3 lysine 27 methylation in Polycomb-group silencing. Science 298: 1039-1043.
    • (2002) Science , vol.298 , pp. 1039-1043
    • Cao, R.1    Wang, L.2    Wang, H.3    Xia, L.4    Erdjument-Bromage, H.5
  • 41
    • 76149142791 scopus 로고    scopus 로고
    • Polycomb complexes act redundantly to repress genomic repeats and genes
    • Leeb M, Pasini D, Novatchkova M, Jaritz M, Helin K, et al. (2010) Polycomb complexes act redundantly to repress genomic repeats and genes. Genes Dev 24: 265-276.
    • (2010) Genes Dev , vol.24 , pp. 265-276
    • Leeb, M.1    Pasini, D.2    Novatchkova, M.3    Jaritz, M.4    Helin, K.5
  • 42
    • 77954224132 scopus 로고    scopus 로고
    • Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns
    • Edwards JR, O'Donnell AH, Rollins RA, Peckham HE, Lee C, et al. (2010) Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns. Genome Res 20: 972-980.
    • (2010) Genome Res , vol.20 , pp. 972-980
    • Edwards, J.R.1    O'Donnell, A.H.2    Rollins, R.A.3    Peckham, H.E.4    Lee, C.5
  • 43
    • 0027141519 scopus 로고
    • Number of CpG islands and genes in human and mouse
    • Antequera F, Bird A, (1993) Number of CpG islands and genes in human and mouse. Proc Natl Acad Sci U S A 90: 11995-11999.
    • (1993) Proc Natl Acad Sci U S A , vol.90 , pp. 11995-11999
    • Antequera, F.1    Bird, A.2
  • 44
    • 0042329754 scopus 로고    scopus 로고
    • Structure, function and evolution of CpG island promoters
    • Antequera F, (2003) Structure, function and evolution of CpG island promoters. Cell Mol Life Sci 60: 1647-1658.
    • (2003) Cell Mol Life Sci , vol.60 , pp. 1647-1658
    • Antequera, F.1
  • 45
    • 0036606768 scopus 로고    scopus 로고
    • Epigenetic regulation of an IAP retrotransposon in the aging mouse: progressive demethylation and de-silencing of the element by its repetitive induction
    • Barbot W, Dupressoir A, Lazar V, Heidmann T, (2002) Epigenetic regulation of an IAP retrotransposon in the aging mouse: progressive demethylation and de-silencing of the element by its repetitive induction. Nucleic Acids Res 30: 2365-2373.
    • (2002) Nucleic Acids Res , vol.30 , pp. 2365-2373
    • Barbot, W.1    Dupressoir, A.2    Lazar, V.3    Heidmann, T.4
  • 46
    • 0029898690 scopus 로고    scopus 로고
    • Germ line-specific expression of intracisternal A-particle retrotransposons in transgenic mice
    • Dupressoir A, Heidmann T, (1996) Germ line-specific expression of intracisternal A-particle retrotransposons in transgenic mice. Mol Cell Biol 16: 4495-4503.
    • (1996) Mol Cell Biol , vol.16 , pp. 4495-4503
    • Dupressoir, A.1    Heidmann, T.2
  • 47
    • 39049103917 scopus 로고    scopus 로고
    • Chromatin structure and the regulation of gene expression: the lessons of PEV in Drosophila
    • Girton JR, Johansen KM, (2008) Chromatin structure and the regulation of gene expression: the lessons of PEV in Drosophila. Adv Genet 61: 1-43.
    • (2008) Adv Genet , vol.61 , pp. 1-43
    • Girton, J.R.1    Johansen, K.M.2
  • 48
    • 0033579468 scopus 로고    scopus 로고
    • Tandem B1 elements located in a mouse methylation center provide a target for de novo DNA methylation
    • Yates PA, Burman RW, Mummaneni P, Krussel S, Turker MS, (1999) Tandem B1 elements located in a mouse methylation center provide a target for de novo DNA methylation. J Biol Chem 274: 36357-36361.
    • (1999) J Biol Chem , vol.274 , pp. 36357-36361
    • Yates, P.A.1    Burman, R.W.2    Mummaneni, P.3    Krussel, S.4    Turker, M.S.5
  • 49
    • 0034094820 scopus 로고    scopus 로고
    • SINE retroposons can be used in vivo as nucleation centers for de novo methylation
    • Arnaud P, Goubely C, Pelissier T, Deragon JM, (2000) SINE retroposons can be used in vivo as nucleation centers for de novo methylation. Mol Cell Biol 20: 3434-3441.
    • (2000) Mol Cell Biol , vol.20 , pp. 3434-3441
    • Arnaud, P.1    Goubely, C.2    Pelissier, T.3    Deragon, J.M.4
  • 50
    • 52949095077 scopus 로고    scopus 로고
    • Retrotransposons revisited: the restraint and rehabilitation of parasites
    • Goodier JL, Kazazian HH Jr, (2008) Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell 135: 23-35.
    • (2008) Cell , vol.135 , pp. 23-35
    • Goodier, J.L.1    Kazazian Jr., H.H.2
  • 51
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • Slotkin RK, Martienssen R, (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8: 272-285.
    • (2007) Nat Rev Genet , vol.8 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 52
    • 34548705374 scopus 로고    scopus 로고
    • Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse
    • Kato Y, Kaneda M, Hata K, Kumaki K, Hisano M, et al. (2007) Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse. Hum Mol Genet 16: 2272-2280.
    • (2007) Hum Mol Genet , vol.16 , pp. 2272-2280
    • Kato, Y.1    Kaneda, M.2    Hata, K.3    Kumaki, K.4    Hisano, M.5
  • 53
    • 77954232280 scopus 로고    scopus 로고
    • Repression of retrotransposal elements in mouse embryonic stem cells is primarily mediated by a DNA methylation-independent mechanism
    • Hutnick LK, Huang X, Loo TC, Ma Z, Fan G, (2010) Repression of retrotransposal elements in mouse embryonic stem cells is primarily mediated by a DNA methylation-independent mechanism. J Biol Chem 285: 21082-21091.
    • (2010) J Biol Chem , vol.285 , pp. 21082-21091
    • Hutnick, L.K.1    Huang, X.2    Loo, T.C.3    Ma, Z.4    Fan, G.5
  • 54
    • 77954688477 scopus 로고    scopus 로고
    • 5-azacytidine treatment reorganizes genomic histone modification patterns
    • Komashko VM, Farnham PJ, (2010) 5-azacytidine treatment reorganizes genomic histone modification patterns. Epigenetics 5.
    • (2010) Epigenetics , vol.5
    • Komashko, V.M.1    Farnham, P.J.2
  • 56
    • 77950421703 scopus 로고    scopus 로고
    • KRAB-zinc finger proteins and KAP1 can mediate long-range transcriptional repression through heterochromatin spreading
    • doi:10.1371/journal.pgen.1000869
    • Groner AC, Meylan S, Ciuffi A, Zangger N, Ambrosini G, et al. (2010) KRAB-zinc finger proteins and KAP1 can mediate long-range transcriptional repression through heterochromatin spreading. PLoS Genet 6: e1000869 doi:10.1371/journal.pgen.1000869.
    • (2010) PLoS Genet , vol.6
    • Groner, A.C.1    Meylan, S.2    Ciuffi, A.3    Zangger, N.4    Ambrosini, G.5
  • 57
    • 0021079485 scopus 로고
    • Early differential tissue expression of transposon-like repetitive DNA sequences of the mouse
    • Brulet P, Kaghad M, Xu YS, Croissant O, Jacob F, (1983) Early differential tissue expression of transposon-like repetitive DNA sequences of the mouse. Proc Natl Acad Sci U S A 80: 5641-5645.
    • (1983) Proc Natl Acad Sci U S A , vol.80 , pp. 5641-5645
    • Brulet, P.1    Kaghad, M.2    Xu, Y.S.3    Croissant, O.4    Jacob, F.5
  • 58
    • 0029562398 scopus 로고
    • IAP retrotransposons in the mouse liver as reporters of ageing
    • Dupressoir A, Puech A, Heidmann T, (1995) IAP retrotransposons in the mouse liver as reporters of ageing. Biochim Biophys Acta 1264: 397-402.
    • (1995) Biochim Biophys Acta , vol.1264 , pp. 397-402
    • Dupressoir, A.1    Puech, A.2    Heidmann, T.3
  • 59
    • 0028274570 scopus 로고
    • Developmental and cell type specificity of LINE-1 expression in mouse testis: implications for transposition
    • Branciforte D, Martin SL, (1994) Developmental and cell type specificity of LINE-1 expression in mouse testis: implications for transposition. Mol Cell Biol 14: 2584-2592.
    • (1994) Mol Cell Biol , vol.14 , pp. 2584-2592
    • Branciforte, D.1    Martin, S.L.2
  • 60
    • 0347123629 scopus 로고    scopus 로고
    • Early nutrition, epigenetic changes at transposons and imprinted genes, and enhanced susceptibility to adult chronic diseases
    • Waterland RA, Jirtle RL, (2004) Early nutrition, epigenetic changes at transposons and imprinted genes, and enhanced susceptibility to adult chronic diseases. Nutrition 20: 63-68.
    • (2004) Nutrition , vol.20 , pp. 63-68
    • Waterland, R.A.1    Jirtle, R.L.2
  • 61
    • 0043093697 scopus 로고    scopus 로고
    • Transposable elements: targets for early nutritional effects on epigenetic gene regulation
    • Waterland RA, Jirtle RL, (2003) Transposable elements: targets for early nutritional effects on epigenetic gene regulation. Mol Cell Biol 23: 5293-5300.
    • (2003) Mol Cell Biol , vol.23 , pp. 5293-5300
    • Waterland, R.A.1    Jirtle, R.L.2
  • 62
    • 55849106286 scopus 로고    scopus 로고
    • Natural epigenetic protection against the I-factor, a Drosophila LINE retrotransposon, by remnants of ancestral invasions
    • doi:10.1371/journal.pone.0000304
    • Dramard X, Heidmann T, Jensen S, (2007) Natural epigenetic protection against the I-factor, a Drosophila LINE retrotransposon, by remnants of ancestral invasions. PLoS One 2: e304 doi:10.1371/journal.pone.0000304.
    • (2007) PLoS One , vol.2
    • Dramard, X.1    Heidmann, T.2    Jensen, S.3
  • 63
    • 70350232064 scopus 로고    scopus 로고
    • Endogenous retroviral LTRs as promoters for human genes: a critical assessment
    • Cohen CJ, Lock WM, Mager DL, (2009) Endogenous retroviral LTRs as promoters for human genes: a critical assessment. Gene 448: 105-114.
    • (2009) Gene , vol.448 , pp. 105-114
    • Cohen, C.J.1    Lock, W.M.2    Mager, D.L.3
  • 64
    • 77954100084 scopus 로고    scopus 로고
    • Transposable elements have rewired the core regulatory network of human embryonic stem cells
    • Kunarso G, Chia NY, Jeyakani J, Hwang C, Lu X, et al. (2010) Transposable elements have rewired the core regulatory network of human embryonic stem cells. Nat Genet 42: 631-634.
    • (2010) Nat Genet , vol.42 , pp. 631-634
    • Kunarso, G.1    Chia, N.Y.2    Jeyakani, J.3    Hwang, C.4    Lu, X.5
  • 65
    • 79952614013 scopus 로고    scopus 로고
    • Endogenous retroviruses and neighboring genes are coordinately repressed by LSD1/KDM1A
    • Macfarlan TS, Gifford WD, Agarwal S, Driscoll S, Lettieri K, et al. (2011) Endogenous retroviruses and neighboring genes are coordinately repressed by LSD1/KDM1A. Genes Dev 25: 594-607.
    • (2011) Genes Dev , vol.25 , pp. 594-607
    • Macfarlan, T.S.1    Gifford, W.D.2    Agarwal, S.3    Driscoll, S.4    Lettieri, K.5
  • 66
    • 48349136083 scopus 로고    scopus 로고
    • The agouti mouse model: an epigenetic biosensor for nutritional and environmental alterations on the fetal epigenome
    • Dolinoy DC, (2008) The agouti mouse model: an epigenetic biosensor for nutritional and environmental alterations on the fetal epigenome. Nutr Rev 66 (Suppl 1): S7-11.
    • (2008) Nutr Rev , vol.66 , Issue.SUPPL. 1
    • Dolinoy, D.C.1
  • 67
    • 77957932941 scopus 로고    scopus 로고
    • Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
    • Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, et al. (2010) Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nat Biotechnol 28: 1097-1105.
    • (2010) Nat Biotechnol , vol.28 , pp. 1097-1105
    • Harris, R.A.1    Wang, T.2    Coarfa, C.3    Nagarajan, R.P.4    Hong, C.5
  • 68
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589-595.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 69
    • 48249140621 scopus 로고    scopus 로고
    • FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology
    • Fejes AP, Robertson G, Bilenky M, Varhol R, Bainbridge M, et al. (2008) FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology. Bioinformatics 24: 1729-1730.
    • (2008) Bioinformatics , vol.24 , pp. 1729-1730
    • Fejes, A.P.1    Robertson, G.2    Bilenky, M.3    Varhol, R.4    Bainbridge, M.5
  • 73
    • 34547904256 scopus 로고    scopus 로고
    • Widely variable endogenous retroviral methylation levels in human placenta
    • Reiss D, Zhang Y, Mager DL, (2007) Widely variable endogenous retroviral methylation levels in human placenta. Nucleic Acids Res 35: 4743-4754.
    • (2007) Nucleic Acids Res , vol.35 , pp. 4743-4754
    • Reiss, D.1    Zhang, Y.2    Mager, D.L.3
  • 74
    • 48449097251 scopus 로고    scopus 로고
    • QUMA: quantification tool for methylation analysis
    • Kumaki Y, Oda M, Okano M, (2008) QUMA: quantification tool for methylation analysis. Nucleic Acids Res 36: W170-175.
    • (2008) Nucleic Acids Res , vol.36 , pp. 170-175
    • Kumaki, Y.1    Oda, M.2    Okano, M.3
  • 75
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3: RESEARCH0034.
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5
  • 76
    • 27544479631 scopus 로고    scopus 로고
    • Survey of allelic expression using EST mining
    • Ge B, Gurd S, Gaudin T, Dore C, Lepage P, et al. (2005) Survey of allelic expression using EST mining. Genome Res 15: 1584-1591.
    • (2005) Genome Res , vol.15 , pp. 1584-1591
    • Ge, B.1    Gurd, S.2    Gaudin, T.3    Dore, C.4    Lepage, P.5
  • 77
    • 68149112577 scopus 로고    scopus 로고
    • CSN-5, a component of the COP9 signalosome complex, regulates the levels of UNC-96 and UNC-98, two components of M-lines in Caenorhabditis elegans muscle
    • Miller RK, Qadota H, Stark TJ, Mercer KB, Wortham TS, et al. (2009) CSN-5, a component of the COP9 signalosome complex, regulates the levels of UNC-96 and UNC-98, two components of M-lines in Caenorhabditis elegans muscle. Mol Biol Cell 20: 3608-3616.
    • (2009) Mol Biol Cell , vol.20 , pp. 3608-3616
    • Miller, R.K.1    Qadota, H.2    Stark, T.J.3    Mercer, K.B.4    Wortham, T.S.5
  • 78
    • 0032964297 scopus 로고    scopus 로고
    • BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences
    • Tatusova TA, Madden TL, (1999) BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 174: 247-250.
    • (1999) FEMS Microbiol Lett , vol.174 , pp. 247-250
    • Tatusova, T.A.1    Madden, T.L.2
  • 79
    • 0142092446 scopus 로고    scopus 로고
    • Structure and expression of mobile ETnII retroelements and their coding-competent MusD relatives in the mouse
    • Baust C, Gagnier L, Baillie GJ, Harris MJ, Juriloff DM, et al. (2003) Structure and expression of mobile ETnII retroelements and their coding-competent MusD relatives in the mouse. J Virol 77: 11448-11458.
    • (2003) J Virol , vol.77 , pp. 11448-11458
    • Baust, C.1    Gagnier, L.2    Baillie, G.J.3    Harris, M.J.4    Juriloff, D.M.5
  • 80
    • 77449148128 scopus 로고    scopus 로고
    • Variable DNA methylation of transposable elements: the case study of mouse Early Transposons
    • Reiss D, Zhang Y, Rouhi A, Reuter M, Mager DL, (2010) Variable DNA methylation of transposable elements: the case study of mouse Early Transposons. Epigenetics 5: 68-79.
    • (2010) Epigenetics , vol.5 , pp. 68-79
    • Reiss, D.1    Zhang, Y.2    Rouhi, A.3    Reuter, M.4    Mager, D.L.5
  • 81
    • 0034284437 scopus 로고    scopus 로고
    • Repbase update: a database and an electronic journal of repetitive elements
    • Jurka J, (2000) Repbase update: a database and an electronic journal of repetitive elements. Trends Genet 16: 418-420.
    • (2000) Trends Genet , vol.16 , pp. 418-420
    • Jurka, J.1
  • 82
    • 0034764307 scopus 로고    scopus 로고
    • SSAHA: a fast search method for large DNA databases
    • Ning Z, Cox AJ, Mullikin JC, (2001) SSAHA: a fast search method for large DNA databases. Genome Res 11: 1725-1729.
    • (2001) Genome Res , vol.11 , pp. 1725-1729
    • Ning, Z.1    Cox, A.J.2    Mullikin, J.C.3


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