-
1
-
-
0021779934
-
Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats
-
Staley J.T., Konopka A. Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Ann. Rev. Microbiol. 1985, 39:321-346.
-
(1985)
Ann. Rev. Microbiol.
, vol.39
, pp. 321-346
-
-
Staley, J.T.1
Konopka, A.2
-
2
-
-
0023184331
-
Bacterial evolution
-
Woese C.R. Bacterial evolution. Microbiol. Rev. 1987, 51:221-271.
-
(1987)
Microbiol. Rev.
, vol.51
, pp. 221-271
-
-
Woese, C.R.1
-
3
-
-
0001271789
-
Phylogenetic structure of the prokaryotic domain: the primary kingdoms
-
Woese C.R., Fox G.E. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc. Natl. Acad. Sci. USA 1977, 74:5088-5090.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 5088-5090
-
-
Woese, C.R.1
Fox, G.E.2
-
4
-
-
0028343555
-
Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
-
Barns S.M., et al. Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc. Natl. Acad. Sci. USA 1994, 91:1609-1613.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 1609-1613
-
-
Barns, S.M.1
-
5
-
-
0028308089
-
Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park
-
Reysenbach A.L., Wickham G.S., Pace N.R. Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park. Appl. Environ. Microbiol. 1994, 60:2113-2119.
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 2113-2119
-
-
Reysenbach, A.L.1
Wickham, G.S.2
Pace, N.R.3
-
6
-
-
84920629237
-
A renaissance for the pioneering 16S rRNA gene
-
Tringe S.G., Hugenholtz P. A renaissance for the pioneering 16S rRNA gene. Curr. Opin. Microbiol. 2008, 11:442-446.
-
(2008)
Curr. Opin. Microbiol.
, vol.11
, pp. 442-446
-
-
Tringe, S.G.1
Hugenholtz, P.2
-
7
-
-
52949115612
-
Microbiology: metagenomics
-
Hugenholtz P., Tyson G.W. Microbiology: metagenomics. Nature 2008, 455:481-483.
-
(2008)
Nature
, vol.455
, pp. 481-483
-
-
Hugenholtz, P.1
Tyson, G.W.2
-
8
-
-
0017341656
-
Microbial ecology of the gastrointestinal tract
-
Savage D.C. Microbial ecology of the gastrointestinal tract. Annu. Rev. Microbiol. 1977, 31:107-133.
-
(1977)
Annu. Rev. Microbiol.
, vol.31
, pp. 107-133
-
-
Savage, D.C.1
-
9
-
-
35348968286
-
The human microbiome project
-
Turnbaugh P.J., et al. The human microbiome project. Nature 2007, 449:804-810.
-
(2007)
Nature
, vol.449
, pp. 804-810
-
-
Turnbaugh, P.J.1
-
10
-
-
35348961403
-
An ecological and evolutionary perspective on human-microbe mutualism and disease
-
Dethlefsen L., McFall-Ngai M., Relman D.A. An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature 2007, 449:811-818.
-
(2007)
Nature
, vol.449
, pp. 811-818
-
-
Dethlefsen, L.1
McFall-Ngai, M.2
Relman, D.A.3
-
11
-
-
77955445965
-
Pathogenesis of contact lens-associated microbial keratitis
-
Carnt N., et al. Pathogenesis of contact lens-associated microbial keratitis. Optometry Vis. Sci. 2010, 87:612-613.
-
(2010)
Optometry Vis. Sci.
, vol.87
, pp. 612-613
-
-
Carnt, N.1
-
12
-
-
0037453721
-
Global phage diversity
-
Rohwer F. Global phage diversity. Cell 2003, 113:141.
-
(2003)
Cell
, vol.113
, pp. 141
-
-
Rohwer, F.1
-
13
-
-
33750344695
-
16S rRNA sequencing in routine bacterial identification: a 30-month experiment
-
Mignard S., Flandrois J.P. 16S rRNA sequencing in routine bacterial identification: a 30-month experiment. J. Microbiol. Methods 2006, 67:574-581.
-
(2006)
J. Microbiol. Methods
, vol.67
, pp. 574-581
-
-
Mignard, S.1
Flandrois, J.P.2
-
14
-
-
84858864215
-
Molecular methods for pathogen and microbial community detection and characterization: current and potential application in diagnostic microbiology
-
Sibley C.D., Peirano G., Church D.L. Molecular methods for pathogen and microbial community detection and characterization: current and potential application in diagnostic microbiology. Infect. Genet. Evol. 2012, 12:505-521.
-
(2012)
Infect. Genet. Evol.
, vol.12
, pp. 505-521
-
-
Sibley, C.D.1
Peirano, G.2
Church, D.L.3
-
15
-
-
0031662188
-
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
-
Hugenholtz P., Goebel B.M., Pace N.R. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 1998, 180:4765-4774.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4765-4774
-
-
Hugenholtz, P.1
Goebel, B.M.2
Pace, N.R.3
-
16
-
-
77951498638
-
Experimental factors affecting PCR-based estimates of microbial species richness and evenness
-
Engelbrektson A., et al. Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J. 2010, 4:642-647.
-
(2010)
ISME J.
, vol.4
, pp. 642-647
-
-
Engelbrektson, A.1
-
17
-
-
0001857117
-
-
John Wiley & Sons, New York, E. Stackebrandt, M. Goodfellow (Eds.)
-
Nucleic acid techniques in bacterial systematics 1991, 115-175. John Wiley & Sons, New York. 1st ed. E. Stackebrandt, M. Goodfellow (Eds.).
-
(1991)
Nucleic acid techniques in bacterial systematics
, pp. 115-175
-
-
-
18
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M., et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437:376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
-
19
-
-
36148937913
-
A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing
-
Parameswaran P., et al. A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing. Nucleic Acids Res. 2007, 35:e130.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Parameswaran, P.1
-
20
-
-
79952005915
-
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
-
Caporaso J.G., et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc. Natl. Acad. Sci. USA 2011, 108(Suppl. 1):4516-4522.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, Issue.SUPPL 1
, pp. 4516-4522
-
-
Caporaso, J.G.1
-
21
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso J.G., et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 2010, 7:335-336.
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
-
22
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald D., et al. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 2012, 6:610-618.
-
(2012)
ISME J.
, vol.6
, pp. 610-618
-
-
McDonald, D.1
-
23
-
-
84871445069
-
-
Wiley-Blackwell, West Sussex, United Kingdom
-
Magurran A.E. Measuring giological diversity 2003, 264. Wiley-Blackwell, West Sussex, United Kingdom. 1st ed.
-
(2003)
Measuring giological diversity
, pp. 264
-
-
Magurran, A.E.1
-
24
-
-
73449128271
-
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
-
Hamady M., Lozupone C., Knight R. Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J. 2009, 4:17-27.
-
(2009)
ISME J.
, vol.4
, pp. 17-27
-
-
Hamady, M.1
Lozupone, C.2
Knight, R.3
-
25
-
-
83755163018
-
Detecting novel associations in large data sets
-
Reshef D.N., et al. Detecting novel associations in large data sets. Science 2011, 334:1518-1524.
-
(2011)
Science
, vol.334
, pp. 1518-1524
-
-
Reshef, D.N.1
-
26
-
-
84858591675
-
Evidence of uncultivated bacteria in the adult female bladder
-
Wolfe A.J., et al. Evidence of uncultivated bacteria in the adult female bladder. J. Clin. Microbiol. 2012, 50:1376-1383.
-
(2012)
J. Clin. Microbiol.
, vol.50
, pp. 1376-1383
-
-
Wolfe, A.J.1
-
27
-
-
84855916141
-
Spatial distribution of microbial communities in the cystic fibrosis lung
-
Accessed 17 December 2011.
-
Willner D., et al. Spatial distribution of microbial communities in the cystic fibrosis lung. ISME J 2011, Accessed 17 December 2011. http://dx.doi.org/10.1038/ismej.2011.104.
-
(2011)
ISME J
-
-
Willner, D.1
-
28
-
-
82455174913
-
True microbiota involved in chronic lung infection of cystic fibrosis patients found by culturing and 16S rRNA gene analysis
-
abstract. Accessed 22 December 2011.
-
Rudkjøbing V.B., et al. True microbiota involved in chronic lung infection of cystic fibrosis patients found by culturing and 16S rRNA gene analysis. J. Clin. Microbiol. 2011, abstract. Accessed 22 December 2011. http://jcm.asm.org/content/early/2011/10/14/JCM.06092-11.
-
(2011)
J. Clin. Microbiol.
-
-
Rudkjøbing, V.B.1
-
29
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
Gill S.R., et al. Metagenomic analysis of the human distal gut microbiome. Science 2006, 312:1355-1359.
-
(2006)
Science
, vol.312
, pp. 1355-1359
-
-
Gill, S.R.1
-
30
-
-
77957357555
-
The human oral microbiome
-
Dewhirst F.E., et al. The human oral microbiome. J. Bacteriol. 2010, 192:5002-5017.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 5002-5017
-
-
Dewhirst, F.E.1
-
31
-
-
80054944901
-
Role of the commensal microbiota in normal and pathogenic host immune responses
-
Littman D.R., Pamer E.G. Role of the commensal microbiota in normal and pathogenic host immune responses. Cell Host Microbe 2011, 10:311-323.
-
(2011)
Cell Host Microbe
, vol.10
, pp. 311-323
-
-
Littman, D.R.1
Pamer, E.G.2
-
32
-
-
0034938204
-
Intestinal microflora in human and experimental inflammatory bowel disease
-
Sartor R.B. Intestinal microflora in human and experimental inflammatory bowel disease. Curr. Opin. Gastroenterol. 2001, 17:324-330.
-
(2001)
Curr. Opin. Gastroenterol.
, vol.17
, pp. 324-330
-
-
Sartor, R.B.1
-
33
-
-
79551697907
-
The bacterial pathogenesis and treatment of pouchitis
-
McLaughlin S.D., et al. The bacterial pathogenesis and treatment of pouchitis. Thera. Adv. Gastroenterol. 2010, 3:335-348.
-
(2010)
Thera. Adv. Gastroenterol.
, vol.3
, pp. 335-348
-
-
McLaughlin, S.D.1
-
34
-
-
79956359184
-
Towards the human colorectal cancer microbiome
-
Marchesi J.R., et al. Towards the human colorectal cancer microbiome. PLoS ONE 2011, 6:e20447.
-
(2011)
PLoS ONE
, vol.6
-
-
Marchesi, J.R.1
-
35
-
-
84871405076
-
Smokers with active Crohn's disease have a clinically relevant dysbiosis of the gastrointestinal microbiota
-
Accessed 18 March 2012.
-
Benjamin J.L., et al. Smokers with active Crohn's disease have a clinically relevant dysbiosis of the gastrointestinal microbiota. Inflamm. Bowel Dis. 2011, Accessed 18 March 2012. http://www.ncbi.nlm.nih.gov/pubmed/22102318.
-
(2011)
Inflamm. Bowel Dis.
-
-
Benjamin, J.L.1
-
36
-
-
78650616947
-
Toward defining the autoimmune microbiome for type 1 diabetes
-
Giongo A., et al. Toward defining the autoimmune microbiome for type 1 diabetes. ISME J. 2011, 5:82-91.
-
(2011)
ISME J.
, vol.5
, pp. 82-91
-
-
Giongo, A.1
-
37
-
-
78650099360
-
Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases
-
Frank D.N., et al. Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases. Inflamm. Bowel Dis. 2011, 17:179-184.
-
(2011)
Inflamm. Bowel Dis.
, vol.17
, pp. 179-184
-
-
Frank, D.N.1
-
38
-
-
77649119443
-
Disordered microbial communities in asthmatic airways
-
Hilty M., et al. Disordered microbial communities in asthmatic airways. PLoS ONE 2010, 5:e8578. 10.1371/journal.pone.0008578.
-
(2010)
PLoS ONE
, vol.5
-
-
Hilty, M.1
-
39
-
-
67650951420
-
Inflammation and intestinal metaplasia of the distal esophagus are associated with alterations in the microbiome
-
Yang L., et al. Inflammation and intestinal metaplasia of the distal esophagus are associated with alterations in the microbiome. Gastroenterology 2009, 137:588-597.
-
(2009)
Gastroenterology
, vol.137
, pp. 588-597
-
-
Yang, L.1
-
40
-
-
41649109613
-
Functional metagenomic profiling of nine biomes
-
Dinsdale E.A., et al. Functional metagenomic profiling of nine biomes. Nature 2008, 452:629-632.
-
(2008)
Nature
, vol.452
, pp. 629-632
-
-
Dinsdale, E.A.1
-
41
-
-
0036070576
-
Bacteriophage control of bacterial virulence
-
Wagner P.L., Waldor M.K. Bacteriophage control of bacterial virulence. Infect. Immun. 2002, 70:3985-3993.
-
(2002)
Infect. Immun.
, vol.70
, pp. 3985-3993
-
-
Wagner, P.L.1
Waldor, M.K.2
-
42
-
-
21244451543
-
Phenotypic variability of Pseudomonas aeruginosa in sputa from patients with acute infective exacerbation of cystic fibrosis and its impact on the validity of antimicrobial susceptibility testing
-
Foweraker J.E., et al. Phenotypic variability of Pseudomonas aeruginosa in sputa from patients with acute infective exacerbation of cystic fibrosis and its impact on the validity of antimicrobial susceptibility testing. J. Antimicrob. Chemother. 2005, 55:921-927.
-
(2005)
J. Antimicrob. Chemother.
, vol.55
, pp. 921-927
-
-
Foweraker, J.E.1
-
43
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., et al. Basic local alignment search tool. J. Mol. Biol. 1990, 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
-
45
-
-
74549198200
-
The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes
-
Angly F.E., et al. The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Comput. Biol. 2009, 5:e1000593.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Angly, F.E.1
-
46
-
-
34547588704
-
KAAS: an automatic genome annotation and pathway reconstruction server
-
Moriya Y., et al. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 2007, 35:W182-W185.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Moriya, Y.1
-
47
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh P.J., et al. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006, 444:1027-1031.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
-
48
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh P.J., et al. A core gut microbiome in obese and lean twins. Nature 2008, 457:480-484.
-
(2008)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
-
49
-
-
84355161776
-
The oral metagenome in health and disease
-
Belda-Ferre P., et al. The oral metagenome in health and disease. ISME J. 2011, 6:46-56.
-
(2011)
ISME J.
, vol.6
, pp. 46-56
-
-
Belda-Ferre, P.1
-
50
-
-
77952675537
-
Interaction of probiotics and pathogens - benefits to human health?
-
Salminen S., et al. Interaction of probiotics and pathogens - benefits to human health?. Curr. Opin. Biotechnol. 2010, 21:157-167.
-
(2010)
Curr. Opin. Biotechnol.
, vol.21
, pp. 157-167
-
-
Salminen, S.1
-
51
-
-
83255187997
-
Competitive selection of lactic acid bacteria that persist in the human oral cavity
-
Snel J., et al. Competitive selection of lactic acid bacteria that persist in the human oral cavity. Appl. Environ. Microbiol. 2011, 77:8445-8450.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 8445-8450
-
-
Snel, J.1
-
52
-
-
70649100022
-
Faecal transplant for recurrent Clostridium Difficile-associated diarrhoea: A UK case series
-
MacConnachie A.A., et al. Faecal transplant for recurrent Clostridium Difficile-associated diarrhoea: A UK case series. Q. J. Med. 2009, 102:781-784.
-
(2009)
Q. J. Med.
, vol.102
, pp. 781-784
-
-
MacConnachie, A.A.1
-
53
-
-
77951700268
-
Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent Clostridium difficile-associated diarrhea
-
Khoruts A., et al. Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent Clostridium difficile-associated diarrhea. J. Clin. Gastroenterol. 2010, 44:354-360.
-
(2010)
J. Clin. Gastroenterol.
, vol.44
, pp. 354-360
-
-
Khoruts, A.1
-
54
-
-
0033798852
-
Rationale for the luminal provision of butyrate in intestinal diseases
-
Wächtershäuser A., Stein J. Rationale for the luminal provision of butyrate in intestinal diseases. Eur. J. Nutr. 2000, 39:164-171.
-
(2000)
Eur. J. Nutr.
, vol.39
, pp. 164-171
-
-
Wächtershäuser, A.1
Stein, J.2
-
55
-
-
83055186603
-
Ecology drives a global network of gene exchange connecting the human microbiome
-
Smillie C.S., et al. Ecology drives a global network of gene exchange connecting the human microbiome. Nature 2011, 480:241-244.
-
(2011)
Nature
, vol.480
, pp. 241-244
-
-
Smillie, C.S.1
-
56
-
-
84856374839
-
Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae
-
Stecher B., et al. Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae. Proc. Natl. Acad. Sci. USA 2012, 109:1269-1274.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 1269-1274
-
-
Stecher, B.1
-
57
-
-
80052826492
-
Bacteriophages carrying antibiotic resistance genes in fecal waste from cattle, pigs, and poultry
-
Colomer-Lluch M., et al. Bacteriophages carrying antibiotic resistance genes in fecal waste from cattle, pigs, and poultry. Antimicrob. Agents Chemother. 2011, 55:4908-4911.
-
(2011)
Antimicrob. Agents Chemother.
, vol.55
, pp. 4908-4911
-
-
Colomer-Lluch, M.1
-
58
-
-
80054690786
-
Bacteriophages and diffusion of genes encoding antimicrobial resistance in cystic fibrosis sputum microbiota
-
Fancello L., et al. Bacteriophages and diffusion of genes encoding antimicrobial resistance in cystic fibrosis sputum microbiota. J. Antimicrob. Chemother. 2011, 66:2448-2454.
-
(2011)
J. Antimicrob. Chemother.
, vol.66
, pp. 2448-2454
-
-
Fancello, L.1
-
59
-
-
80054809778
-
Mining virulence genes using metagenomics
-
Belda-Ferre P., et al. Mining virulence genes using metagenomics. PLoS ONE 2011, 6:e24975.
-
(2011)
PLoS ONE
, vol.6
-
-
Belda-Ferre, P.1
-
60
-
-
64749109065
-
Laboratory procedures to generate viral metagenomes
-
Thurber R.V., et al. Laboratory procedures to generate viral metagenomes. Nat. Protoc. 2009, 4:470-483.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 470-483
-
-
Thurber, R.V.1
-
61
-
-
0035949592
-
A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species
-
Allander T., et al. A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species. Proc. Natl. Acad. Sci. USA 2001, 98:11609-11614.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11609-11614
-
-
Allander, T.1
-
62
-
-
80355149025
-
Using a pan-viral microarray assay (Virochip) to screen clinical samples for viral pathogens
-
Accessed 24 March 2012.
-
Chen E.C., et al. Using a pan-viral microarray assay (Virochip) to screen clinical samples for viral pathogens. J Vis Exp 2011, Accessed 24 March 2012. http://www.ncbi.nlm.nih.gov/pubmed/21559002.
-
(2011)
J Vis Exp
-
-
Chen, E.C.1
-
63
-
-
67649911268
-
Metagenomic signatures of 86 microbial and viral metagenomes
-
Willner D., Thurber R.V., Rohwer F. Metagenomic signatures of 86 microbial and viral metagenomes. Environ. Microbiol. 2009, 11:1752-1766.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 1752-1766
-
-
Willner, D.1
Thurber, R.V.2
Rohwer, F.3
-
65
-
-
19144363310
-
PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information
-
Angly F., et al. PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. BMC Bioinform. 2005, 6:41.
-
(2005)
BMC Bioinform.
, vol.6
, pp. 41
-
-
Angly, F.1
-
66
-
-
77954627922
-
Viruses in the faecal microbiota of monozygotic twins and their mothers
-
Reyes A., et al. Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature 2010, 466:334-338.
-
(2010)
Nature
, vol.466
, pp. 334-338
-
-
Reyes, A.1
-
67
-
-
80053528043
-
The human gut virome: inter-individual variation and dynamic response to diet
-
Minot S., et al. The human gut virome: inter-individual variation and dynamic response to diet. Genome Res. 2011, 21:1616-1625.
-
(2011)
Genome Res.
, vol.21
, pp. 1616-1625
-
-
Minot, S.1
-
68
-
-
24644516529
-
Cloning of a human parvovirus by molecular screening of respiratory tract samples
-
Allander T., et al. Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc. Natl. Acad. Sci. USA 2005, 102:12891-12896.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 12891-12896
-
-
Allander, T.1
-
69
-
-
84857089823
-
Characterization of the viral microbiome in patients with severe lower respiratory tract infections, using metagenomic sequencing
-
Lysholm F., et al. Characterization of the viral microbiome in patients with severe lower respiratory tract infections, using metagenomic sequencing. PLoS ONE 2012, 7:e30875.
-
(2012)
PLoS ONE
, vol.7
-
-
Lysholm, F.1
-
71
-
-
40349087269
-
Metagenomic analysis of human diarrhea: viral detection and discovery
-
Finkbeiner SR, et al. Metagenomic analysis of human diarrhea: viral detection and discovery. PLoS Pathog. 2008, 4:e1000011.
-
(2008)
PLoS Pathog.
, vol.4
-
-
Finkbeiner, S.R.1
-
72
-
-
66149121345
-
Cardioviruses are genetically diverse and cause common enteric infections in South Asian children
-
Blinkova O., et al. Cardioviruses are genetically diverse and cause common enteric infections in South Asian children. J. Virol. 2009, 83:4631-4641.
-
(2009)
J. Virol.
, vol.83
, pp. 4631-4641
-
-
Blinkova, O.1
-
73
-
-
66149101252
-
Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis
-
Victoria J.G., et al. Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J. Virol. 2009, 83:4642-4651.
-
(2009)
J. Virol.
, vol.83
, pp. 4642-4651
-
-
Victoria, J.G.1
-
74
-
-
40449115382
-
A new arenavirus in a cluster of fatal transplant-associated diseases
-
Palacios G., et al. A new arenavirus in a cluster of fatal transplant-associated diseases. N. Engl. J. Med. 2008, 358:991-998.
-
(2008)
N. Engl. J. Med.
, vol.358
, pp. 991-998
-
-
Palacios, G.1
-
75
-
-
67249156188
-
Genetic detection and characterization of Lujo virus, a new hemorrhagic fever-associated arenavirus from southern Africa
-
Briese T., et al. Genetic detection and characterization of Lujo virus, a new hemorrhagic fever-associated arenavirus from southern Africa. PLoS Pathog. 2009, 5:e1000455.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Briese, T.1
-
76
-
-
81755187218
-
Metagenomic analysis of fever, thrombocytopenia and leukopenia syndrome (ftls) in Henan Province, China: discovery of a new bunyavirus
-
Xu B., et al. Metagenomic analysis of fever, thrombocytopenia and leukopenia syndrome (ftls) in Henan Province, China: discovery of a new bunyavirus. PLoS Pathog. 2011, 7:e1002369.
-
(2011)
PLoS Pathog.
, vol.7
-
-
Xu, B.1
-
77
-
-
82355175773
-
Using next generation sequencing to identify yellow fever virus in Uganda
-
McMullan L.K., et al. Using next generation sequencing to identify yellow fever virus in Uganda. Virology 2012, 422:1-5.
-
(2012)
Virology
, vol.422
, pp. 1-5
-
-
McMullan, L.K.1
-
78
-
-
84857846563
-
Virus identification in unknown tropical febrile illness cases using deep sequencing
-
Yozwiak N.L., et al. Virus identification in unknown tropical febrile illness cases using deep sequencing. PLoS Negl. Trop. Dis. 2012, 6:e1485.
-
(2012)
PLoS Negl. Trop. Dis.
, vol.6
-
-
Yozwiak, N.L.1
-
79
-
-
74949107171
-
Epidemiology of invasive mycoses in North America
-
Pfaller M.A., Diekema D.J. Epidemiology of invasive mycoses in North America. Crit. Rev. Microbiol. 2010, 36:1-53.
-
(2010)
Crit. Rev. Microbiol.
, vol.36
, pp. 1-53
-
-
Pfaller, M.A.1
Diekema, D.J.2
-
80
-
-
84055193579
-
Invasive mycoses: diagnostic challenges
-
Ostrosky-Zeichner L. Invasive mycoses: diagnostic challenges. Am. J. Med. 2012, 125:S14-S24.
-
(2012)
Am. J. Med.
, vol.125
-
-
Ostrosky-Zeichner, L.1
-
81
-
-
84856350114
-
DNA analysis of outdoor air reveals a high degree of fungal diversity, temporal variability, and genera not seen by spore morphology
-
Pashley C.H., et al. DNA analysis of outdoor air reveals a high degree of fungal diversity, temporal variability, and genera not seen by spore morphology. Fungal Biol. 2012, 116:214-224.
-
(2012)
Fungal Biol.
, vol.116
, pp. 214-224
-
-
Pashley, C.H.1
-
82
-
-
33745021113
-
Evaluation of the viability of pathogenic filamentous fungi after prolonged storage in sterile water and review of recent published studies on storage methods
-
Borman A.M., et al. Evaluation of the viability of pathogenic filamentous fungi after prolonged storage in sterile water and review of recent published studies on storage methods. Mycopathologia 2006, 161:361-368.
-
(2006)
Mycopathologia
, vol.161
, pp. 361-368
-
-
Borman, A.M.1
-
83
-
-
67650079041
-
Pyrosequencing analysis of 20 nucleotides of internal transcribed spacer 2 discriminates Candida parapsilosis, Candida metapsilosis, and Candida orthopsilosis
-
Borman A.M., et al. Pyrosequencing analysis of 20 nucleotides of internal transcribed spacer 2 discriminates Candida parapsilosis, Candida metapsilosis, and Candida orthopsilosis. J. Clin. Microbiol. 2009, 47:2307-2310.
-
(2009)
J. Clin. Microbiol.
, vol.47
, pp. 2307-2310
-
-
Borman, A.M.1
-
84
-
-
84859972408
-
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi
-
Schoch C.L., et al. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi. Proc. Natl. Acad. Sci. USA 2012, 109:6241-6246.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 6241-6246
-
-
Schoch, C.L.1
-
85
-
-
45749142504
-
Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification
-
Nilsson R.H., et al. Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification. Evol. Bioinform. Online 2008, 4:193-201.
-
(2008)
Evol. Bioinform. Online
, vol.4
, pp. 193-201
-
-
Nilsson, R.H.1
-
86
-
-
84863288251
-
Characterization of the fungal microbiota (mycobiome) in healthy and dandruff-afflicted human scalps
-
Park H.K., et al. Characterization of the fungal microbiota (mycobiome) in healthy and dandruff-afflicted human scalps. PLoS ONE 2012, 7:e32847.
-
(2012)
PLoS ONE
, vol.7
-
-
Park, H.K.1
-
87
-
-
77649230349
-
Characterization of the oral fungal microbiome (mycobiome) in healthy individuals
-
Ghannoum M.A., et al. Characterization of the oral fungal microbiome (mycobiome) in healthy individuals. PLoS Pathog 2010, 6:e1000713.
-
(2010)
PLoS Pathog
, vol.6
-
-
Ghannoum, M.A.1
-
88
-
-
84860484915
-
The airway microbiota in cystic fibrosis: a complex fungal and bacterial community - implications for therapeutic management
-
Delhaes L., et al. The airway microbiota in cystic fibrosis: a complex fungal and bacterial community - implications for therapeutic management. PLoS ONE 2012, 7:e36313.
-
(2012)
PLoS ONE
, vol.7
-
-
Delhaes, L.1
|