Metagenomic analysis of fever, thrombocytopenia and leukopenia syndrome (ftls) in henan province, China: Discovery of a new bunyavirus

PLoS Pathogens

Volumn 7, Issue 11, 2011, Pages

  Xu, Bianli ^a   Liu, Licheng ^b   Huang, Xueyong ^a   Ma, Hong ^a   Zhang, Yuan ^c   Du, Yanhua ^a   Wang, Pengzhi ^b   Tang, Xiaoyan ^a   Wang, Haifeng ^a   Kang, Kai ^a   Zhang, Shiqiang ^d   Zhao, Guohua ^d   Wu, Weili ^c   Yang, Yinhui ^e   Chen, Haomin ^a   Mu, Feng ^b   Chen, Weijun ^b,c,e  

^a CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^b BGI SHENZHEN   (China)

^c Chinese Academy of Sciences and China National Center for Bioinformation   (China)

^d Center for Disease Control and Prevention of Xinyang City   (China)

^e BEIJING INSTITUTE OF MICROBIOLOGY AND EPIDEMIOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE AMINOTRANSFERASE; ASPARTATE AMINOTRANSFERASE; CALCIUM; CREATINE KINASE; LACTATE DEHYDROGENASE; SODIUM; VIRUS RNA;

ALANINE AMINOTRANSFERASE BLOOD LEVEL; AMINO ACID SEQUENCE; ANTIBODY TITER; ARTICLE; ASPARTATE AMINOTRANSFERASE BLOOD LEVEL; BLOOD SAMPLING; BUNYAVIRUS; CALCIUM BLOOD LEVEL; CHINA; CREATINE KINASE BLOOD LEVEL; FEVER; FEVER, THROMBOCYTOPENIA AND LEUKOPENIA SYNDROME; HENAN FEVER VIRUS; HUMAN; HUMAN TISSUE; IMMUNOFLUORESCENCE; LACTATE DEHYDROGENASE BLOOD LEVEL; LEUKOPENIA; MAJOR CLINICAL STUDY; METAGENOMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHLEBOVIRUS; PHYLOGENETIC TREE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SODIUM BLOOD LEVEL; THROMBOCYTOPENIA; TRANSMISSION ELECTRON MICROSCOPY; UNINDEXED SEQUENCE; VIRUS CULTURE; VIRUS GENOME; VIRUS ISOLATION; ADULT; AGED; BUNYAVIRUS INFECTION; COMMUNICABLE DISEASE; EPIDEMIOLOGY; FEMALE; GENETICS; ISOLATION AND PURIFICATION; MALE; MIDDLE AGED; MOLECULAR GENETICS; SYNDROME; VIROLOGY;

IXODIDA; ORTHOBUNYAVIRUS; PHLEBOVIRUS; TEHRAN VIRUS; UUKUNIEMI VIRUS;

ADULT; AGED; AGED, 80 AND OVER; BUNYAVIRIDAE; BUNYAVIRIDAE INFECTIONS; CHINA; COMMUNICABLE DISEASES, EMERGING; FEMALE; FEVER; HUMANS; LEUKOPENIA; MALE; METAGENOMICS; MIDDLE AGED; MOLECULAR SEQUENCE DATA; PHLEBOVIRUS; SEROEPIDEMIOLOGIC STUDIES; SYNDROME; THROMBOCYTOPENIA;

EID: 81755187218     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1002369     Document Type: Article

References (37)

1. He JG, Cheng ZX, Wu JB, Yang XX, Li Q, et al. (2006) The Epidemiological Investigation on a human to human anaplasmosis infection in South Anhui Province in 2006. World J Infect 5: 343-347.
2. Xu BL, Chen HM, Zhu Q, Zhang J, Xia SL, et al. (2006) The Epidemiological Investigation on the First Outbreak of Tsutsugamushi Disease in Henan Province. Henan J Prev Med 17: 3.
3. Wen B, Jian R, Zhang Y, Chen R, (2002) Simultaneous Detection of Anaplasma marginale and a New Ehrlichia Species Closely Related to Ehrlichia chaffeensis by Sequence Analyses of 16S Ribosomal DNA in Boophilus microplus Ticks from Tibet. J Clin Microbiol 40: 3286-3290.
4. Du P, (1982) Medical experimental virology. Shanghai Shanghai Association of Microbiology pp. 211-212.
5. Dumler JS, Choi KS, Garcia-Garcia JC, Barat NS, Scorpio DG, et al. (2005) Human granulocytic anaplasmosis and Anaplasma phagocytophilum. Emerg Infect Dis 11: 1828-1834.
6. Eng TR, Harkess JR, Fishbein DB, Dawson JE, Greene CN, et al. (1990) Epidemiologic, clinical, and laboratory findings of human ehrlichiosis in the United States, 1988. JAMA 264: 2251-2258.
7. MOH of the people's republic of China (2008) Guide for Human granulocytic anaplasmosis control. http://www.moh.gov.cn/publicfiles/business/htmlfiles/mohbgt/pw10805/200804/31429.htm.
8. Paul S, Diana S, (2001) Dictionary of Microbiology and Molecular Biology. Chichester John Wiley & Sons, Ltd pp. 1-4 3rd edition.
9. Meiyu F, Huosheng C, Cuihua C, Xiaodong T, Lianhua J, et al. (1997) Detection of flaviviruses by reverse transcriptase polymerase chain reaction with the universal primer set. Microbiol Immunol 41: 209-213.
10. Bai Z, Liu L, Tu Z, Yao L, Liu J, et al. (2008) Real-time PCR for detecting circulating dengue virus in the Guangdong Province of China in 2006. J Med Microbiol 57: 1547-1552.
11. Xie RH, Xu F, Zhu HP, Cheng YK, Fu GM, et al. (2009) Development and evaluation of TaqMan-based one-step reverse transcription-polymerase chain reaction assay for the detection of Japanese encephalitis virus. Zhonghua Liu Xing Bing Xue Za Zhi 30: 277-280.
12. Santhosh SR, Parida MM, Dash PK, Pateriya A, Pattnaik B, et al. (2007) Development and evaluation of SYBR Green I-based one-step real-time RT-PCR assay for detection and quantification of Chikungunya virus. J Clin Virol 39: 188-193.
13. Kang X, Li Y, Liu H, Lin F, Cai X, et al. (2010) A duplex real-time reverse transcriptase polymerase chain reaction assay for the detection of Western Equine Encephalitis virus and Eastern Equine Encephalitis virus. Virol J 7: 284.
14. Chinikar S, Goya MM, Shirzadi MR, Ghiasi SM, Mirahmadi R, et al. (2008) Surveillance and laboratory detection system of Crimean-Congo haemorrhagic fever in Iran. Transbound Emerg Dis 55: 200-204.
15. Suzuki A, Bisordi I, Levis S, Garcia J, Pereira LE, et al. (2004) Identifying rodent hantavirus reservoirs, Brazil. Emerg Infect Dis 10: 2127-2134.
16. Garcia S, Crance JM, Billecocq A, Peinnequin A, Jouan A, et al. (2001) Quantitative Real-Time PCR detection of Rift Valley Fever virus and its application to evaluation of antiviral compounds. J Clin Microbiol 39: 4456-4461.
17. Jin Q, (2001) Medical Molecular Virology. Beijing Science Press 1st edition.
18. Peiris JSM, Lai ST, Poon LL, Guan Y, Yam LY, et al. (2003) Coronavirus as a possible cause of severe acute respiratory syndrome. Lancet 361: 1319-1325.
19. Franchini G, Collalti E, Arya SK, Fenyö EM, Biberfeld G, et al. (1987) Genetic analysis of a new subgroup of human and simian T-lymphotropic retroviruses: HTLV-IV, LAV-2, SBL-6669, and STLV-IIIAGM. AIDS Res Hum Retroviruses 3: 11-17.
20. Cox-Foster DL, Conlan S, Holmes EC, Palacios G, Evans JD, et al. (2007) A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder. Science 318: 283.
21. Finkbeiner SR, Allred AF, Tarr PI, Klein EJ, Kirkwood CD, et al. (2008) Finkbeiner Metagenomic Analysis of Human Diarrhea: Viral Detection and Discovery. PLoS Pathog 4: e1000011.
22. Palacios G, Druce J, Du L, Tran T, Birch C, et al. (2008) A New Arenavirus in a Cluster of Fatal Transplant-Associated Diseases. N Engl J Med 358: 991-998.
23. Woods Lt Col JB, (2005) USAMRIID's Medical Management of Biological Casualties Handbook. Fort Detrick, Maryland U.S. Army Medical Institute of Infectious Diseases pp. 143-144 6th edition.
24. Li R, Li Y, Karsten K, Wang J, (2008) Sequence analysis SOAP: short oligonucleotide alignment program. BIOINFORMATICS 24: 713-714.
25. Bohlander SK, Espinosa R 3rd, Le Beau MM, Rowley JD, Díaz MO, (1992) A method for the rapid sequence-independent amplification of microdissected chromosomal material. Genomics 13: 1322-1324.
26. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
27. Li W, Godzik A, (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659.
28. Huang X, Madan A, (1999) CAP3: a DNA sequence assembly program. Genome Res 9: 868-877.
29. Sloots TP, McErlean P, Speicher DJ, Arden KE, Nissen MD, et al. (2006) Evidence of human coronavirus HKU1 and human bocavirus in Australian children. J Clin Virol 35: 99-102.
30. Bishop DH, Calisher CH, Casals J, Chumakov MP, Gaidamovich SY, et al. (1980) Bunyaviridae. Intervirology 14: 125-143.
31. Jin Q, (2001) Medical Molecular Virology. Beijing Science Press 1st edition.
32. Ewing B, Hillier L, Wendl MC, Green P, (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175-185.
33. Swofford DL, (1998) PAUP*.Phylogenetic Analysis Using Parsimony (*and Other Methods).Sunderland, Massachusettes Sinauer Associates.
34. Wootton SC, Kim DS, Kondoh Y, Chen E, Lee JS, et al. (2011) Viral infection in acute exacerbation of idiopathic pulmonary fibrosis. Am J Respir Crit Care Med 183: 1698-1702.
35. Greene CE, Addie DD, (2006) Feline parvovirus infections. In: Greene CE (ed). Infectious Diseases of the Dog and Cat. St. Louis: Saunders Elsevier 78-88.
36. Mayo MA, (2002) Virus taxonomy-Houston 2002. Arch Virol 147: 1071-1076.
37. Yu XJ, Liang MF, Zhang SY, Liu Y, Li JD, et al. (2011) Fever with Thrombocytopenia Associated with a Novel Bunyavirus in China. N Engl J Med 364: 1523-1532.