-
1
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
Black DL. 2003. Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem 72: 291-336.
-
(2003)
Annu Rev Biochem
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
2
-
-
33745899048
-
Alternative splicing: New insights from global analyses
-
Blencowe BJ. 2006. Alternative splicing: new insights from global analyses. Cell 126: 37-47.
-
(2006)
Cell
, vol.126
, pp. 37-47
-
-
Blencowe, B.J.1
-
3
-
-
2642577338
-
A bidirectional SF2/ASF- and SRp40-dependent splicing enhancer regulates human immunodeficiency virus type 1 rev, env, vpu, and nef gene expression
-
Caputi M, Freund M, Kammler S, Asang C, Schaal H. 2004. A bidirectional SF2/ASF- and SRp40-dependent splicing enhancer regulates human immunodeficiency virus type 1 rev, env, vpu, and nef gene expression. J Virol 78: 6517-6526.
-
(2004)
J Virol
, vol.78
, pp. 6517-6526
-
-
Caputi, M.1
Freund, M.2
Kammler, S.3
Asang, C.4
Schaal, H.5
-
4
-
-
0033017499
-
The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers
-
Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. 1999. The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA 5: 468-483.
-
(1999)
RNA
, vol.5
, pp. 468-483
-
-
Cavaloc, Y.1
Bourgeois, C.F.2
Kister, L.3
Stevenin, J.4
-
5
-
-
0033105787
-
Binding of hnRNP H to an exonic splicing silencer is involved in the regulation of alternative splicing of the rat β-tropomyosin gene
-
Chen CD, Kobayashi R, Helfman DM. 1999. Binding of hnRNP H to an exonic splicing silencer is involved in the regulation of alternative splicing of the rat β-tropomyosin gene. Genes Dev 13: 593-606.
-
(1999)
Genes Dev
, vol.13
, pp. 593-606
-
-
Chen, C.D.1
Kobayashi, R.2
Helfman, D.M.3
-
6
-
-
79957784833
-
Interaction between the RNA binding domains of Ser-Arg splicing factor 1 and U1-70K snRNP protein determines early spliceosome assembly
-
Cho S, Hoang A, Sinha R, Zhong XY, Fu XD, Krainer AR, Ghosh G. 2011. Interaction between the RNA binding domains of Ser-Arg splicing factor 1 and U1-70K snRNP protein determines early spliceosome assembly. Proc Natl Acad Sci 108: 8233-8238.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 8233-8238
-
-
Cho, S.1
Hoang, A.2
Sinha, R.3
Zhong, X.Y.4
Fu, X.D.5
Krainer, A.R.6
Ghosh, G.7
-
7
-
-
0032708815
-
Resolution of the mammalian e complex and the ATP-dependent spliceosomal complexes on native agarose minigels
-
Das R, Reed R. 1999. Resolution of the mammalian E complex and the ATP-dependent spliceosomal complexes on native agarose minigels. RNA 5: 1504-1508.
-
(1999)
RNA
, vol.5
, pp. 1504-1508
-
-
Das, R.1
Reed, R.2
-
8
-
-
0030027575
-
Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities
-
Dember LM, Kim ND, Liu KQ, Anderson P. 1996. Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem 271: 2783-2788.
-
(1996)
J Biol Chem
, vol.271
, pp. 2783-2788
-
-
Dember, L.M.1
Kim, N.D.2
Liu, K.Q.3
Anderson, P.4
-
10
-
-
0037121924
-
The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5′ splice sites
-
Forch P, Puig O, Martinez C, Seraphin B, Valcarcel J. 2002. The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5′ splice sites. EMBO J 21: 6882-6892.
-
(2002)
EMBO J
, vol.21
, pp. 6882-6892
-
-
Forch, P.1
Puig, O.2
Martinez, C.3
Seraphin, B.4
Valcarcel, J.5
-
11
-
-
0026599345
-
The 35-kDa mammalian splicing factor SC35 mediates specific interactions between U1 and U2 small nuclear ribonucleoprotein particles at the 3′ splice site
-
Fu XD, Maniatis T. 1992. The 35-kDa mammalian splicing factor SC35 mediates specific interactions between U1 and U2 small nuclear ribonucleoprotein particles at the 3′ splice site. Proc Natl Acad Sci 89: 1725-1729.
-
(1992)
Proc Natl Acad Sci
, vol.89
, pp. 1725-1729
-
-
Fu, X.D.1
Maniatis, T.2
-
12
-
-
0033835333
-
Sorting out the complexity of SR protein functions
-
Graveley BR. 2000. Sorting out the complexity of SR protein functions. RNA 6: 1197-1211.
-
(2000)
RNA
, vol.6
, pp. 1197-1211
-
-
Graveley, B.R.1
-
13
-
-
70349690170
-
Isoforms of U1-70k control subunit dynamics in the human spliceosomal U1 snRNP
-
doi: 10.1371/journal.pone.0007202
-
Hernandez H, Makarova OV, Makarov EM, Morgner N, Muto Y, Krummel DP, Robinson CV. 2009. Isoforms of U1-70k control subunit dynamics in the human spliceosomal U1 snRNP. PLoS ONE 4: e7202. doi: 10.1371/journal.pone.0007202.
-
(2009)
PLoS ONE
, vol.4
-
-
Hernandez, H.1
Makarova, O.V.2
Makarov, E.M.3
Morgner, N.4
Muto, Y.5
Krummel, D.P.6
Robinson, C.V.7
-
14
-
-
27944471762
-
Analyzing mechanisms of alternative pre-mRNA splicing using in vitro splicing assays
-
Hicks MJ, Lam BJ, Hertel KJ. 2005. Analyzing mechanisms of alternative pre-mRNA splicing using in vitro splicing assays. Methods 37: 306-313.
-
(2005)
Methods
, vol.37
, pp. 306-313
-
-
Hicks, M.J.1
Lam, B.J.2
Hertel, K.J.3
-
15
-
-
77950643284
-
Competing upstream 5′ splice sites enhance the rate of proximal splicing
-
Hicks MJ, Mueller WF, Shepard PJ, Hertel KJ. 2010. Competing upstream 5′ splice sites enhance the rate of proximal splicing. Mol Cell Biol 30: 1878-1886.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 1878-1886
-
-
Hicks, M.J.1
Mueller, W.F.2
Shepard, P.J.3
Hertel, K.J.4
-
16
-
-
84861161751
-
Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins
-
Huelga SC, Vu AQ, Arnold JD, Liang TY, Liu PP, Yan BY, Donohue JP, Shiue L, Hoon S, Brenner S et al. 2012. Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins. Cell Rep 1: 167-178.
-
(2012)
Cell Rep
, vol.1
, pp. 167-178
-
-
Huelga, S.C.1
Vu, A.Q.2
Arnold, J.D.3
Liang, T.Y.4
Liu, P.P.5
Yan, B.Y.6
Donohue, J.P.7
Shiue, L.8
Hoon, S.9
Brenner, S.10
-
17
-
-
17044427579
-
Serine/arginine-rich protein-dependent suppression of exon skipping by exonic splicing enhancers
-
Ibrahim EC, Schaal TD, Hertel KJ, Reed R, Maniatis T. 2005. Serine/arginine-rich protein-dependent suppression of exon skipping by exonic splicing enhancers. Proc Natl Acad Sci 102: 5002-5007.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 5002-5007
-
-
Ibrahim, E.C.1
Schaal, T.D.2
Hertel, K.J.3
Reed, R.4
Maniatis, T.5
-
18
-
-
0035798607
-
A second exon splicing silencer within human immunodeficiency virus type 1 Tat exon 2 represses splicing of Tat mRNA and binds protein hnRNP H
-
Jacquenet S, Mereau A, Bilodeau PS, Damier L, Stoltzfus CM, Branlant C. 2001. A second exon splicing silencer within human immunodeficiency virus type 1 Tat exon 2 represses splicing of Tat mRNA and binds protein hnRNP H. J Biol Chem 276: 40464-40475.
-
(2001)
J Biol Chem
, vol.276
, pp. 40464-40475
-
-
Jacquenet, S.1
Mereau, A.2
Bilodeau, P.S.3
Damier, L.4
Stoltzfus, C.M.5
Branlant, C.6
-
19
-
-
0035031935
-
The sequence complementarity between HIV-1 5′ splice site SD4 and U1 snRNA determines the steady-state level of an unstable env pre-mRNA
-
Kammler S, Leurs C, Freund M, Krummheuer J, Seidel K, Tange TO, Lund MK, Kjems J, Scheid A, Schaal H. 2001. The sequence complementarity between HIV-1 5′ splice site SD4 and U1 snRNA determines the steady-state level of an unstable env pre-mRNA. RNA 7: 421-434.
-
(2001)
RNA
, vol.7
, pp. 421-434
-
-
Kammler, S.1
Leurs, C.2
Freund, M.3
Krummheuer, J.4
Seidel, K.5
Tange, T.O.6
Lund, M.K.7
Kjems, J.8
Scheid, A.9
Schaal, H.10
-
20
-
-
33845892508
-
The strength of the HIV-1 3′ splice sites affects Rev function
-
doi: 10.1186/1742-4690-3-89
-
Kammler S, Otte M, Hauber I, Kjems J, Hauber J, Schaal H. 2006. The strength of the HIV-1 3′ splice sites affects Rev function. Retrovirology 3: 89. doi: 10.1186/1742-4690-3-89.
-
(2006)
Retrovirology
, vol.3
, pp. 89
-
-
Kammler, S.1
Otte, M.2
Hauber, I.3
Kjems, J.4
Hauber, J.5
Schaal, H.6
-
21
-
-
0030013179
-
Inhibition by SR proteins of splicing of a regulated adenovirus pre-mRNA
-
Kanopka A, Muhlemann O, Akusjarvi G. 1996. Inhibition by SR proteins of splicing of a regulated adenovirus pre-mRNA. Nature 381: 535-538.
-
(1996)
Nature
, vol.381
, pp. 535-538
-
-
Kanopka, A.1
Muhlemann, O.2
Akusjarvi, G.3
-
22
-
-
0036079158
-
The human genome browser at UCSC
-
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D. 2002. The human genome browser at UCSC. Genome Res 12: 996-1006.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
23
-
-
0022549635
-
Electrophoretic separation of complexes involved in the splicing of precursors to mRNAs
-
Konarska MM, Sharp PA. 1986. Electrophoretic separation of complexes involved in the splicing of precursors to mRNAs. Cell 46: 845-855.
-
(1986)
Cell
, vol.46
, pp. 845-855
-
-
Konarska, M.M.1
Sharp, P.A.2
-
24
-
-
59449100357
-
Spliceosome assembly pathways for different types of alternative splicing converge during commitment to splice site pairing in the A complex
-
Kotlajich MV, Crabb TL, Hertel KJ. 2009. Spliceosome assembly pathways for different types of alternative splicing converge during commitment to splice site pairing in the A complex. Mol Cell Biol 29: 1072-1082.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 1072-1082
-
-
Kotlajich, M.V.1
Crabb, T.L.2
Hertel, K.J.3
-
25
-
-
33748127132
-
U1-like snRNAs lacking complementarity to canonical 5′ splice sites
-
Kyriakopoulou C, Larsson P, Liu L, Schuster J, Soderbom F, Kirsebom LA, Virtanen A. 2006. U1-like snRNAs lacking complementarity to canonical 5′ splice sites. RNA 12: 1603-1611.
-
(2006)
RNA
, vol.12
, pp. 1603-1611
-
-
Kyriakopoulou, C.1
Larsson, P.2
Liu, L.3
Schuster, J.4
Soderbom, F.5
Kirsebom, L.A.6
Virtanen, A.7
-
26
-
-
42449159377
-
SR proteins and related factors in alternative splicing
-
Lin S, Fu XD. 2007. SR proteins and related factors in alternative splicing. Adv Exp Med Biol 623: 107-122.
-
(2007)
Adv Exp Med Biol
, vol.623
, pp. 107-122
-
-
Lin, S.1
Fu, X.D.2
-
27
-
-
77956342570
-
Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB
-
Llorian M, Schwartz S, Clark TA, Hollander D, Tan LY, Spellman R, Gordon A, Schweitzer AC, de la Grange P, Ast G, et al. 2010. Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB. Nat Struct Mol Biol 17: 1114-1123.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 1114-1123
-
-
Llorian, M.1
Schwartz, S.2
Clark, T.A.3
Hollander, D.4
Tan, L.Y.5
Spellman, R.6
Gordon, A.7
Schweitzer, A.C.8
De La Grange, P.9
Ast, G.10
-
28
-
-
79960646885
-
Multi-domain conformational selection underlies pre-mRNA splicing regulation by U2AF
-
Mackereth CD, Madl T, Bonnal S, Simon B, Zanier K, Gasch A, Rybin V, Valcarcel J, Sattler M. 2011. Multi-domain conformational selection underlies pre-mRNA splicing regulation by U2AF. Nature 475: 408-411.
-
(2011)
Nature
, vol.475
, pp. 408-411
-
-
Mackereth, C.D.1
Madl, T.2
Bonnal, S.3
Simon, B.4
Zanier, K.5
Gasch, A.6
Rybin, V.7
Valcarcel, J.8
Sattler, M.9
-
29
-
-
0031690775
-
Distinct functions of the closely related tandem RNA-recognition motifs of hnRNP A1
-
Mayeda A, Munroe SH, Xu RM, Krainer AR. 1998. Distinct functions of the closely related tandem RNA-recognition motifs of hnRNP A1. RNA 4: 1111-1123.
-
(1998)
RNA
, vol.4
, pp. 1111-1123
-
-
Mayeda, A.1
Munroe, S.H.2
Xu, R.M.3
Krainer, A.R.4
-
30
-
-
74749089043
-
Context-dependent regulatory mechanism of the splicing factor hnRNP L
-
Motta-Mena LB, Heyd F, Lynch KW. 2010. Context-dependent regulatory mechanism of the splicing factor hnRNP L. Mol Cell 37: 223-234.
-
(2010)
Mol Cell
, vol.37
, pp. 223-234
-
-
Motta-Mena, L.B.1
Heyd, F.2
Lynch, K.W.3
-
31
-
-
75849145292
-
Expansion of the eukaryotic proteome by alternative splicing
-
Nilsen TW, Graveley BR. 2010. Expansion of the eukaryotic proteome by alternative splicing. Nature 463: 457-463.
-
(2010)
Nature
, vol.463
, pp. 457-463
-
-
Nilsen, T.W.1
Graveley, B.R.2
-
32
-
-
23844471326
-
HnRNP L represses exon splicing via a regulated exonic splicing silencer
-
Rothrock CR, House AE, Lynch KW. 2005. HnRNP L represses exon splicing via a regulated exonic splicing silencer. EMBO J 24: 2792-2802.
-
(2005)
EMBO J
, vol.24
, pp. 2792-2802
-
-
Rothrock, C.R.1
House, A.E.2
Lynch, K.W.3
-
33
-
-
34250313662
-
Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes
-
Schaub MC, Lopez SR, Caputi M. 2007. Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem 282: 13617-13626.
-
(2007)
J Biol Chem
, vol.282
, pp. 13617-13626
-
-
Schaub, M.C.1
Lopez, S.R.2
Caputi, M.3
-
34
-
-
84863022278
-
A U1-U2 snRNP interaction network during intron definition
-
Shao W, Kim HS, Cao Y, Xu YZ, Query CC. 2012. A U1-U2 snRNP interaction network during intron definition. Mol Cell Biol 32: 470-478.
-
(2012)
Mol Cell Biol
, vol.32
, pp. 470-478
-
-
Shao, W.1
Kim, H.S.2
Cao, Y.3
Xu, Y.Z.4
Query, C.C.5
-
35
-
-
78649639485
-
Human SAP18 mediates assembly of a splicing regulatory multiprotein complex via its ubiquitin-like fold
-
Singh KK, Erkelenz S, Rattay S, Dehof AK, Hildebrandt A, Schulze-Osthoff K, Schaal H, Schwerk C. 2010. Human SAP18 mediates assembly of a splicing regulatory multiprotein complex via its ubiquitin-like fold. RNA 16: 2442-2454.
-
(2010)
RNA
, vol.16
, pp. 2442-2454
-
-
Singh, K.K.1
Erkelenz, S.2
Rattay, S.3
Dehof, A.K.4
Hildebrandt, A.5
Schulze-Osthoff, K.6
Schaal, H.7
Schwerk, C.8
-
36
-
-
33749056769
-
An RNA map predicting Nova-dependent splicing regulation
-
Ule J, Stefani G, Mele A, Ruggiu M, Wang X, Taneri B, Gaasterland T, Blencowe BJ, Darnell RB. 2006. An RNA map predicting Nova-dependent splicing regulation. Nature 444: 580-586.
-
(2006)
Nature
, vol.444
, pp. 580-586
-
-
Ule, J.1
Stefani, G.2
Mele, A.3
Ruggiu, M.4
Wang, X.5
Taneri, B.6
Gaasterland, T.7
Blencowe, B.J.8
Darnell, R.B.9
-
37
-
-
34548133209
-
Downstream intronic splicing enhancers
-
Venables JP. 2007. Downstream intronic splicing enhancers. FEBS Lett 581: 4127-4131.
-
(2007)
FEBS Lett
, vol.581
, pp. 4127-4131
-
-
Venables, J.P.1
-
38
-
-
84864013579
-
Frequent gain and loss of intronic splicing regulatory elements during the evolution of vertebrates
-
Voelker RB, Erkelenz S, Reynoso V, Schaal H, Berglund JA. 2012. Frequent gain and loss of intronic splicing regulatory elements during the evolution of vertebrates. Genome Biol Evol 4: 659-674.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 659-674
-
-
Voelker, R.B.1
Erkelenz, S.2
Reynoso, V.3
Schaal, H.4
Berglund, J.A.5
-
39
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNP machine
-
Wahl MC, Will CL, Luhrmann R. 2009. The spliceosome: design principles of a dynamic RNP machine. Cell 136: 701-718.
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Luhrmann, R.3
-
40
-
-
79953015794
-
G Run-mediated recognition of proteolipid protein and DM20 5′ splice sites by U1 small nuclear RNA is regulated by context and proximity to the splice site
-
Wang E, Mueller WF, Hertel KJ, Cambi F. 2011. G Run-mediated recognition of proteolipid protein and DM20 5′ splice sites by U1 small nuclear RNA is regulated by context and proximity to the splice site. J Biol Chem 286: 4059-4071.
-
(2011)
J Biol Chem
, vol.286
, pp. 4059-4071
-
-
Wang, E.1
Mueller, W.F.2
Hertel, K.J.3
Cambi, F.4
-
41
-
-
57649231776
-
Dynamic regulation of alternative splicing by silencers that modulate 5′ splice site competition
-
Yu Y, Maroney PA, Denker JA, Zhang XH, Dybkov O, Luhrmann R, Jankowsky E, Chasin LA, Nilsen TW. 2008. Dynamic regulation of alternative splicing by silencers that modulate 5′ splice site competition. Cell 135: 1224-1236.
-
(2008)
Cell
, vol.135
, pp. 1224-1236
-
-
Yu, Y.1
Maroney, P.A.2
Denker, J.A.3
Zhang, X.H.4
Dybkov, O.5
Luhrmann, R.6
Jankowsky, E.7
Chasin, L.A.8
Nilsen, T.W.9
|