-
1
-
-
12444329819
-
Vertebrate 2xRBD hnRNP proteins: A comparative analysis of genome, mRNA and protein sequences
-
Akindahunsi AA, Bandiera A, Manzini G. 2005. Vertebrate 2xRBD hnRNP proteins: a comparative analysis of genome, mRNA and protein sequences. Comput Biol Chem. 29:13-23.
-
(2005)
Comput Biol Chem
, vol.29
, pp. 13-23
-
-
Akindahunsi, A.A.1
Bandiera, A.2
Manzini, G.3
-
2
-
-
21244454414
-
Substantial regional variation in substitution rates in the human genome: Importance of GC content, gene density, and telomere-specific effects
-
Arndt PF, Hwa T, Petrov DA. 2005. Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects. J Mol Evol. 60:748-763.
-
(2005)
J Mol Evol
, vol.60
, pp. 748-763
-
-
Arndt, P.F.1
Hwa, T.2
Petrov, D.A.3
-
3
-
-
48949103996
-
A systematic analysis of intronic sequences downstream of 5′ splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation
-
Aznarez I, et al. 2008. A systematic analysis of intronic sequences downstream of 5′ splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation. Genome Res. 18: 1247-1258.
-
(2008)
Genome Res.
, vol.18
, pp. 1247-1258
-
-
Aznarez, I.1
-
4
-
-
30044435456
-
Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion
-
Barbosa-Morais NL, Carmo-Fonseca M, Aparício S. 2006. Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion. Genome Res. 16:66-77.
-
(2006)
Genome Res
, vol.16
, pp. 66-77
-
-
Barbosa-Morais, N.L.1
Carmo-Fonseca, M.2
Aparício, S.3
-
5
-
-
33744980908
-
Mammalian CELF/ Bruno-like RNA-binding proteins: Molecular characteristics and biological functions
-
Barreau C, Paillard L, Méreau A, Osborne HB. 2006. Mammalian CELF/ Bruno-like RNA-binding proteins: molecular characteristics and biological functions. Biochimie. 88:515-525.
-
(2006)
Biochimie
, vol.88
, pp. 515-525
-
-
Barreau, C.1
Paillard, L.2
Méreau, A.3
Osborne, H.B.4
-
6
-
-
0033991967
-
Isochores and the evolutionary genomics of vertebrates
-
Bernardi G. 2000. Isochores and the evolutionary genomics of vertebrates. Gene 241:3-17.
-
(2000)
Gene
, vol.241
, pp. 3-17
-
-
Bernardi, G.1
-
7
-
-
0028215301
-
RNA binding specificity of hnRNP A1: Significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing
-
Burd CG, Dreyfuss G. 1994. RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J. 13:1197-1204.
-
(1994)
EMBO J
, vol.13
, pp. 1197-1204
-
-
Burd, C.G.1
Dreyfuss, G.2
-
8
-
-
82255162146
-
Substitution patterns are GC-biased in divergent sequences across the metazoans
-
Capra JA, Pollard KS. 2011. Substitution patterns are GC-biased in divergent sequences across the metazoans. Genome Biol Evol. 3:516-527.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 516-527
-
-
Capra, J.A.1
Pollard, K.S.2
-
9
-
-
2642577338
-
A bidirectional SF2/ASF- and SRp40-dependent splicing enhancer regulates human immunodeficiency virus type 1 rev, env, vpu, and nef gene expression
-
Caputi M, Freund M, Kammler S, Asang C, Schaal H. 2004. A bidirectional SF2/ASF- and SRp40-dependent splicing enhancer regulates human immunodeficiency virus type 1 rev, env, vpu, and nef gene expression. J Virol. 78:6517-6526.
-
(2004)
J Virol.
, vol.78
, pp. 6517-6526
-
-
Caputi, M.1
Freund, M.2
Kammler, S.3
Asang, C.4
Schaal, H.5
-
10
-
-
0031010287
-
A novel mechanism of aberrant pre-mRNA splicing in humans
-
Cogan JD, et al. 1997. A novel mechanism of aberrant pre-mRNA splicing in humans. Hum Mol Genet. 6:909-912.
-
(1997)
Hum Mol Genet.
, vol.6
, pp. 909-912
-
-
Cogan, J.D.1
-
11
-
-
39249085365
-
Correlations between coding and contiguous non-coding sequences in isochore families from vertebrate genomes
-
Costantini M, Bernardi G. 2008a. Correlations between coding and contiguous non-coding sequences in isochore families from vertebrate genomes. Gene 410:241-248.
-
(2008)
Gene
, vol.410
, pp. 241-248
-
-
Costantini, M.1
Bernardi, G.2
-
12
-
-
42149091628
-
Replication timing, chromosomal bands, and isochores
-
Costantini M, Bernardi G. 2008b. Replication timing, chromosomal bands, and isochores. Proc Natl Acad Sci USA. 105:3433-3437.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 3433-3437
-
-
Costantini, M.1
Bernardi, G.2
-
13
-
-
65549134856
-
The evolution of isochore patterns in vertebrate genomes
-
Costantini M, Cammarano R, Bernardi G. 2009. The evolution of isochore patterns in vertebrate genomes. BMC Genomics 10:146.
-
(2009)
BMC Genomics
, vol.10
, pp. 146
-
-
Costantini, M.1
Cammarano, R.2
Bernardi, G.3
-
15
-
-
34548021894
-
Isochore pattern and gene distribution in the chicken genome
-
Costantini M, Di Filippo M, Auletta F, Bernardi G. 2007. Isochore pattern and gene distribution in the chicken genome. Gene 400: 9-15.
-
(2007)
Gene
, vol.400
, pp. 9-15
-
-
Costantini, M.1
Di Filippo, M.2
Auletta, F.3
Bernardi, G.4
-
17
-
-
0033838148
-
The RNA-binding protein TIA-1 is a novel mammalian splicing regulator acting through intron sequences adjacent to a 5' splice site
-
Del Gatto-Konczak F, et al. 2000. The RNA-binding protein TIA-1 is a novel mammalian splicing regulator acting through intron sequences adjacent to a 5' splice site. Mol Cell Biol. 20:6287-6299.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 6287-6299
-
-
Del Gatto-Konczak, F.1
-
18
-
-
0030027575
-
Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities
-
Dember LM, Kim ND, Liu KQ, Anderson P. 1996. Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271:2783-2788.
-
(1996)
J Biol Chem.
, vol.271
, pp. 2783-2788
-
-
Dember, L.M.1
Kim, N.D.2
Liu, K.Q.3
Anderson, P.4
-
20
-
-
34249723155
-
Frequent gain and loss of functional transcription factor binding sites
-
Doniger SW, Fay JC. 2007. Frequent gain and loss of functional transcription factor binding sites. PLoS Comput Biol. 3:e99.
-
(2007)
PLoS Comput Biol.
, vol.3
-
-
Doniger, S.W.1
Fay, J.C.2
-
21
-
-
34948890647
-
Biased clustered substitutions in the human genome: The footprints of male-driven biased gene conversion
-
Dreszer TR, Wall GD, Haussler D, Pollard KS. 2007. Biased clustered substitutions in the human genome: the footprints of male-driven biased gene conversion. Genome Res. 17:1420-1430.
-
(2007)
Genome Res
, vol.17
, pp. 1420-1430
-
-
Dreszer, T.R.1
Wall, G.D.2
Haussler, D.3
Pollard, K.S.4
-
22
-
-
70350236484
-
Biased gene conversion and the evolution of mammalian genomic landscapes
-
Duret L, Galtier N. 2009. Biased gene conversion and the evolution of mammalian genomic landscapes. Annu Rev Genomics Hum Genet. 10:285-311.
-
(2009)
Annu Rev Genomics Hum Genet.
, vol.10
, pp. 285-311
-
-
Duret, L.1
Galtier, N.2
-
23
-
-
0019884371
-
5-Methylcytosine in eukaryotic DNA
-
Ehrlich M, Wang RY. 1981. 5-Methylcytosine in eukaryotic DNA. Science 212:1350-1357.
-
(1981)
Science
, vol.212
, pp. 1350-1357
-
-
Ehrlich, M.1
Wang, R.Y.2
-
24
-
-
78651320424
-
The UCSC Genome Browser database: Update 2011
-
Fujita PA, et al. 2011. The UCSC Genome Browser database: update 2011. Nucleic Acids Res. 39:D876-D882.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Fujita, P.A.1
-
25
-
-
0034989085
-
Local rates of recombination are positively correlated with GC content in the human genome
-
Fullerton SM, Bernardo Carvalho A, Clark AG. 2001. Local rates of recombination are positively correlated with GC content in the human genome. Mol Biol Evol. 18:1139-1142.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1139-1142
-
-
Fullerton, S.M.1
Bernardo Carvalho, A.2
Clark, A.G.3
-
26
-
-
73649116681
-
The pivotal roles of TIA proteins in 5' splice-site selection of alu exons and across evolution
-
Gal-Mark N, Schwartz S, Ram O, Eyras E, Ast G. 2009. The pivotal roles of TIA proteins in 5' splice-site selection of alu exons and across evolution. PLoS Genet. 5:e1000717.
-
(2009)
PLoS Genet.
, vol.5
-
-
Gal-Mark, N.1
Schwartz, S.2
Ram, O.3
Eyras, E.4
Ast, G.5
-
27
-
-
58149328496
-
GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates
-
Galtier N, Duret L, Glémin S, Ranwez V. 2009. GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates. Trends Genet. 25:1-5.
-
(2009)
Trends Genet
, vol.25
, pp. 1-5
-
-
Galtier, N.1
Duret, L.2
Glémin, S.3
Ranwez, V.4
-
28
-
-
0027992089
-
The determinants of RNA-binding specificity of the heterogeneous nuclear ribonucleoprotein C proteins
-
Görlach M, Burd CG, Dreyfuss G. 1994. The determinants of RNA-binding specificity of the heterogeneous nuclear ribonucleoprotein C proteins. J Biol Chem. 269:23074-23078.
-
(1994)
J Biol Chem
, vol.269
, pp. 23074-23078
-
-
Görlach, M.1
Burd, C.G.2
Dreyfuss, G.3
-
29
-
-
77956687928
-
Functional diversity of the hnRNPs: Past, present and perspectives
-
Han SP, Tang YH, Smith R. 2010. Functional diversity of the hnRNPs: past, present and perspectives. Biochem J. 430:379-392.
-
(2010)
Biochem J
, vol.430
, pp. 379-392
-
-
Han, S.P.1
Tang, Y.H.2
Smith, R.3
-
30
-
-
63449132795
-
Nuclear functions of heterogeneous nuclear ribonucleoproteins A/B
-
He Y, Smith R. 2009. Nuclear functions of heterogeneous nuclear ribonucleoproteins A/B. Cell Mol Life Sci. 66:1239-1256.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 1239-1256
-
-
He, Y.1
Smith, R.2
-
31
-
-
38349127601
-
Combinatorial control of exon recognition
-
Hertel KJ. 2008. Combinatorial control of exon recognition. J Biol Chem. 283:1211-1215.
-
(2008)
J Biol Chem
, vol.283
, pp. 1211-1215
-
-
Hertel, K.J.1
-
32
-
-
21244469877
-
Intronic CA-repeat and CA-rich elements: A new class of regulators of mammalian alternative splicing
-
Hui J, et al. 2005. Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24: 1988-1998.
-
(2005)
EMBO J
, vol.24
, pp. 1988-1998
-
-
Hui, J.1
-
33
-
-
0035031935
-
The sequence complementarity between HIV-1 5' splice site SD4 and U1 snRNA determines the steady-state level of an unstable env pre-mRNA
-
Kammler S, et al. 2001. The sequence complementarity between HIV-1 5' splice site SD4 and U1 snRNA determines the steady-state level of an unstable env pre-mRNA. RNA 7:421-434.
-
(2001)
RNA
, vol.7
, pp. 421-434
-
-
Kammler, S.1
-
34
-
-
77955350101
-
Intronic motif pairs cooperate across exons to promote pre-mRNA splicing
-
Ke S, Chasin LA. 2010. Intronic motif pairs cooperate across exons to promote pre-mRNA splicing. Genome Biol. 11:R84.
-
(2010)
Genome Biol.
, vol.11
-
-
Ke, S.1
Chasin, L.A.2
-
35
-
-
0036079158
-
The human genome browser at UCSC
-
Kent WJ, et al. 2002. The human genome browser at UCSC. Genome Res. 12:996-1006.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
-
36
-
-
77954387023
-
ICLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
-
König J, et al. 2010. iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. Nat Struct Mol Biol. 17:909-915.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 909-915
-
-
König, J.1
-
37
-
-
0035476520
-
A computational scan for U12-dependent introns in the human genome sequence
-
Levine A, Durbin R. 2001. A computational scan for U12-dependent introns in the human genome sequence. Nucleic Acids Res. 29: 4006-4013.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4006-4013
-
-
Levine, A.1
Durbin, R.2
-
38
-
-
2542487636
-
CDKN1C mutation in Wiedemann-Beckwith syndrome patients reduces RNA splicing efficiency and identifies a splicing enhancer
-
Lew JM, et al. 2004. CDKN1C mutation in Wiedemann-Beckwith syndrome patients reduces RNA splicing efficiency and identifies a splicing enhancer. Am J Med Genet A. 127A:268-276.
-
(2004)
Am J Med Genet A
, vol.127 A
, pp. 268-276
-
-
Lew, J.M.1
-
39
-
-
77956342570
-
Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB
-
Llorian M, et al. 2010. Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB. Nat Struct Mol Biol. 17:1114-1123.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 1114-1123
-
-
Llorian, M.1
-
40
-
-
58249093940
-
The SR protein family of splicing factors:master regulators of gene expression
-
Long JC, Caceres JF. 2009. The SR protein family of splicing factors:master regulators of gene expression. Biochem J. 417:15-27.
-
(2009)
Biochem J.
, vol.417
, pp. 15-27
-
-
Long, J.C.1
Caceres, J.F.2
-
41
-
-
33244483620
-
Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing
-
Martinez-Contreras R, et al. 2006. Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing. PLoS Biol. 4:e21.
-
(2006)
PLoS Biol.
, vol.4
-
-
Martinez-Contreras, R.1
-
42
-
-
42449152457
-
HnRNP proteins and splicing control
-
Martinez-Contreras R, et al. 2007. hnRNP proteins and splicing control. Adv Exp Med Biol. 623:123-147.
-
(2007)
Adv Exp Med Biol.
, vol.623
, pp. 123-147
-
-
Martinez-Contreras, R.1
-
43
-
-
57149106806
-
HnRNP H enhances skipping of a nonfunctional exon P3A in CHRNA1 and a mutation disrupting its binding causes congenital myasthenic syndrome
-
Masuda A, et al. 2008. hnRNP H enhances skipping of a nonfunctional exon P3A in CHRNA1 and a mutation disrupting its binding causes congenital myasthenic syndrome. Hum Mol Genet. 17: 4022-4035.
-
(2008)
Hum Mol Genet.
, vol.17
, pp. 4022-4035
-
-
Masuda, A.1
-
44
-
-
18344364099
-
Understanding alternative splicing: Towards a cellular code
-
Matlin AJ, Clark F, Smith CWJ. 2005. Understanding alternative splicing: towards a cellular code. Nat Rev Mol Cell Biol. 6:386-398.
-
(2005)
Nat Rev Mol Cell Biol.
, vol.6
, pp. 386-398
-
-
Matlin, A.J.1
Clark, F.2
Smith, C.W.J.3
-
45
-
-
0030743391
-
G triplets located throughout a class of small vertebrate introns enforce intron borders and regulate splice site selection
-
McCullough AJ, Berget SM. 1997. G triplets located throughout a class of small vertebrate introns enforce intron borders and regulate splice site selection. Mol Cell Biol. 17:4562-4571.
-
(1997)
Mol Cell Biol.
, vol.17
, pp. 4562-4571
-
-
McCullough, A.J.1
Berget, S.M.2
-
46
-
-
84866396863
-
The role of SR and SR-related proteins in pre-mRNA splicing
-
Z Lorkovi, editor. New York: Landes Bioscience and Springer Science
-
Mueller WF, Hertel KJ. 2011. The role of SR and SR-related proteins in pre-mRNA splicing. In: Z Lorkovi, editor. RNA binding proteins. New York: Landes Bioscience and Springer Science, p. 1-21.
-
(2011)
RNA Binding Proteins
, pp. 1-21
-
-
Mueller, W.F.1
Hertel, K.J.2
-
47
-
-
0035861441
-
Resolution of the early placental mammal radiation using Bayesian phylogenetics
-
Murphy WJ, et al. 2001. Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science 294:2348-2351.
-
(2001)
Science
, vol.294
, pp. 2348-2351
-
-
Murphy, W.J.1
-
48
-
-
47249112264
-
Identification of motifs that function in the splicing of non-canonical introns
-
Murray JI, et al. 2008. Identification of motifs that function in the splicing of non-canonical introns. Genome Biol. 9:R97.
-
(2008)
Genome Biol.
, vol.9
-
-
Murray, J.I.1
-
49
-
-
0023766334
-
Conserved quartets near 5' intron junctions in primate nuclear pre-mRNA
-
Nussinov R. 1988. Conserved quartets near 5' intron junctions in primate nuclear pre-mRNA. J Theor Biol. 133:73-84.
-
(1988)
J Theor Biol
, vol.133
, pp. 73-84
-
-
Nussinov, R.1
-
50
-
-
74949092081
-
Detection of nonneutral substitution rates on mammalian phylogenies
-
Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A. 2010. Detection of nonneutral substitution rates on mammalian phylogenies. Genome Res. 20:110-121.
-
(2010)
Genome Res
, vol.20
, pp. 110-121
-
-
Pollard, K.S.1
Hubisz, M.J.2
Rosenbloom, K.R.3
Siepel, A.4
-
51
-
-
22544469467
-
Silencers regulate both constitutive and alternative splicing events in mammals
-
Pozzoli U, Sironi M. 2005. Silencers regulate both constitutive and alternative splicing events in mammals. Cell Mol Life Sci. 62: 1579-1604.
-
(2005)
Cell Mol Life Sci
, vol.62
, pp. 1579-1604
-
-
Pozzoli, U.1
Sironi, M.2
-
52
-
-
73249131626
-
Next-generation SELEX identifies sequence and structural determinants of splicing factor binding in human pre-mRNA sequence
-
Reid DC, et al. 2009. Next-generation SELEX identifies sequence and structural determinants of splicing factor binding in human pre-mRNA sequence. RNA 15:2385-2397.
-
(2009)
RNA
, vol.15
, pp. 2385-2397
-
-
Reid, D.C.1
-
53
-
-
0025098474
-
Exon definition may facilitate splice site selection in RNAs with multiple exons
-
Robberson BL, Cote GJ, Berget SM. 1990. Exon definition may facilitate splice site selection in RNAs with multiple exons. Mol Cell Biol. 10: 84-94.
-
(1990)
Mol Cell Biol.
, vol.10
, pp. 84-94
-
-
Robberson, B.L.1
Cote, G.J.2
Berget, S.M.3
-
54
-
-
77955136814
-
Contrasting GCcontent dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes
-
Romiguier J, Ranwez V, Douzery EJP, Galtier N. 2010. Contrasting GCcontent dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes. Genome Res. 20:1001-1009.
-
(2010)
Genome Res.
, vol.20
, pp. 1001-1009
-
-
Romiguier, J.1
Ranwez, V.2
Douzery, E.J.P.3
Galtier, N.4
-
55
-
-
34250313662
-
Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes
-
Schaub MC, Lopez SR, Caputi M. 2007. Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282:13617-13626.
-
(2007)
J Biol Chem
, vol.282
, pp. 13617-13626
-
-
Schaub, M.C.1
Lopez, S.R.2
Caputi, M.3
-
56
-
-
47749155635
-
Assignment of isochores for all completely sequenced vertebrate genomes using a consensus
-
Schmidt T, Frishman D. 2008. Assignment of isochores for all completely sequenced vertebrate genomes using a consensus. Genome Biol. 9: R104.
-
(2008)
Genome Biol
, vol.9
-
-
Schmidt, T.1
Frishman, D.2
-
57
-
-
78649639485
-
Human SAP18 mediates assembly of a splicing regulatory multiprotein complex via its ubiquitin-like fold
-
Singh KK, et al. 2010. Human SAP18 mediates assembly of a splicing regulatory multiprotein complex via its ubiquitin-like fold. RNA 16: 2442-2454.
-
(2010)
RNA
, vol.16
, pp. 2442-2454
-
-
Singh, K.K.1
-
58
-
-
0029055472
-
Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins
-
Singh R, Valcárcel J, Green MR. 1995. Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science 268:1173-1176.
-
(1995)
Science
, vol.268
, pp. 1173-1176
-
-
Singh, R.1
Valcárcel, J.2
Green, M.R.3
-
59
-
-
0029022901
-
An intronic (A/U)GGG repeat enhances the splicing of an alternative intron of the chicken beta-tropomyosin pre-mRNA
-
Sirand-Pugnet P, Durosay P, Brody E, Marie J. 1995. An intronic (A/U)GGG repeat enhances the splicing of an alternative intron of the chicken beta-tropomyosin pre-mRNA. Nucleic Acids Res. 23:3501-3507.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 3501-3507
-
-
Sirand-Pugnet, P.1
Durosay, P.2
Brody, E.3
Marie, J.4
-
60
-
-
17344371515
-
Nonsyndromic hearing impairment is associated with a mutation in DFNA5
-
Van Laer L, et al. 1998. Nonsyndromic hearing impairment is associated with a mutation in DFNA5. Nat Genet. 20:194-197.
-
(1998)
Nat Genet
, vol.20
, pp. 194-197
-
-
Van Laer, L.1
-
61
-
-
52649110671
-
Multiple and specific mRNA processing targets for the major human hnRNP proteins
-
Venables JP, et al. 2008.Multiple and specific mRNA processing targets for the major human hnRNP proteins. Mol Cell Biol. 28:6033-6043.
-
(2008)
Mol Cell Biol.
, vol.28
, pp. 6033-6043
-
-
Venables, J.P.1
-
62
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNP machine
-
Wahl MC, Will CL, Lührmann R. 2009. The spliceosome: design principles of a dynamic RNP machine. Cell 136:701-718.
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Lührmann, R.3
-
63
-
-
77954366986
-
Promotion of exon 6 inclusion in HuD pre-mRNA by Hu protein family members
-
Wang H, Molfenter J, Zhu H, Lou H. 2010. Promotion of exon 6 inclusion in HuD pre-mRNA by Hu protein family members. Nucleic Acids Res. 38:3760-3770.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 3760-3770
-
-
Wang, H.1
Molfenter, J.2
Zhu, H.3
Lou, H.4
-
64
-
-
78149393552
-
ICLIP predicts the dual splicing effects of TIA-RNA interactions
-
Wang Z, et al. 2010. iCLIP predicts the dual splicing effects of TIA-RNA interactions. PLoS Biol. 8:e1000530.
-
(2010)
PLoS Biol.
, vol.8
-
-
Wang, Z.1
-
65
-
-
42449098125
-
Splicing regulation: From a parts list of regulatory elements to an integrated splicing code
-
Wang Z, Burge CB. 2008. Splicing regulation: from a parts list of regulatory elements to an integrated splicing code. RNA 14:802-813.
-
(2008)
RNA
, vol.14
, pp. 802-813
-
-
Wang, Z.1
Burge, C.B.2
-
66
-
-
59649103083
-
Relationships between replication timing and GC content of cancer-related genes on human chromosomes 11q and 21q
-
Watanabe Y, Abe T, Ikemura T, Maekawa M. 2009. Relationships between replication timing and GC content of cancer-related genes on human chromosomes 11q and 21q. Gene 433:26-31.
-
(2009)
Gene
, vol.433
, pp. 26-31
-
-
Watanabe, Y.1
Abe, T.2
Ikemura, T.3
Maekawa, M.4
-
67
-
-
70349843229
-
Splice site strength-dependent activity and genetic buffering by poly-G runs
-
Xiao X, et al. 2009. Splice site strength-dependent activity and genetic buffering by poly-G runs. Nat Struct Mol Biol. 16:1094-1100.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 1094-1100
-
-
Xiao, X.1
-
68
-
-
18544390159
-
Novel binding of HuR and poly(C)-binding protein to a conservedUC-richmotifwithinthe 3'-untranslatedregionof the androgen receptor messenger RNA
-
Yeap BB, et al. 2002.Novel binding of HuR and poly(C)-binding protein to a conservedUC-richmotifwithinthe 3'-untranslatedregionof the androgen receptor messenger RNA. J Biol Chem. 277:27183-27192.
-
(2002)
J Biol Chem
, vol.277
, pp. 27183-27192
-
-
Yeap, B.B.1
-
69
-
-
8144225362
-
Variation in sequence and organization of splicing regulatory elements in vertebrate genes
-
Yeo G, Hoon S, Venkatesh B, Burge CB. 2004. Variation in sequence and organization of splicing regulatory elements in vertebrate genes. Proc Natl Acad Sci USA. 101:15700-15705.
-
(2004)
Proc Natl Acad Sci USA.
, vol.101
, pp. 15700-15705
-
-
Yeo, G.1
Hoon, S.2
Venkatesh, B.3
Burge, C.B.4
-
70
-
-
2642525438
-
Computational definition of sequence motifs governing constitutive exon splicing
-
Zhang XH-F, Chasin LA. 2004. Computational definition of sequence motifs governing constitutive exon splicing. Genes Dev. 18:1241-1250.
-
(2004)
Genes Dev
, vol.18
, pp. 1241-1250
-
-
Zhang, X.H.-F.1
Chasin, L.A.2
-
71
-
-
0346121460
-
Sequence information for the splicing of human pre-mRNA identified by support vector machine classification
-
Zhang XH-F, Heller KA, Hefter I, Leslie CS, Chasin LA. 2003. Sequence information for the splicing of human pre-mRNA identified by support vector machine classification. Genome Res. 13: 2637-2650.
-
(2003)
Genome Res
, vol.13
, pp. 2637-2650
-
-
Zhang, X.H.-F.1
Heller, K.A.2
Hefter, I.3
Leslie, C.S.4
Chasin, L.A.5
-
72
-
-
80052725687
-
Regulatory variation within and between species
-
Zheng W, Gianoulis TA, Karczewski KJ, Zhao H, Snyder M. 2011. Regulatory variation within and between species. Annu Rev Genomics Hum Genet. 12:327-346.
-
(2011)
Annu Rev Genomics Hum Genet.
, vol.12
, pp. 327-346
-
-
Zheng, W.1
Gianoulis, T.A.2
Karczewski, K.J.3
Zhao, H.4
Snyder, M.5
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