-
1
-
-
0034708178
-
Biodiversity hotspots for conservation priorities
-
Myers N, Mittermeier RA, Mittermeier CG, da Fonseca GA, Kent J, (2000) Biodiversity hotspots for conservation priorities. Nature 403: 853-858.
-
(2000)
Nature
, vol.403
, pp. 853-858
-
-
Myers, N.1
Mittermeier, R.A.2
Mittermeier, C.G.3
da Fonseca, G.A.4
Kent, J.5
-
2
-
-
0141676357
-
Correlation between microbiological and chemical parameters of some hydrothermal springs in New Mexico, USA
-
Rzonca B, Schulze-Makuch D, (2003) Correlation between microbiological and chemical parameters of some hydrothermal springs in New Mexico, USA. J Hidrol 280: 272-284.
-
(2003)
J Hidrol
, vol.280
, pp. 272-284
-
-
Rzonca, B.1
Schulze-Makuch, D.2
-
3
-
-
84855589634
-
In-depth characterization via complementing culture-independent approaches of the microbial community in an acidic hot spring of the Colombian Andes
-
Bohórquez LC, Delgado-Serrano L, López G, Osorio-Forero C, Klepac-Ceraj V, et al. (2012) In-depth characterization via complementing culture-independent approaches of the microbial community in an acidic hot spring of the Colombian Andes. Microb Ecol 63: 103-115.
-
(2012)
Microb Ecol
, vol.63
, pp. 103-115
-
-
Bohórquez, L.C.1
Delgado-Serrano, L.2
López, G.3
Osorio-Forero, C.4
Klepac-Ceraj, V.5
-
4
-
-
33644788119
-
Geochemical and biological diversity of acidic, hot springs in Lassen volcanic National Park
-
Siering PL, Clarke JM, Wilson MS, (2006) Geochemical and biological diversity of acidic, hot springs in Lassen volcanic National Park. Geomicrobiol J 23 (2): 129-141.
-
(2006)
Geomicrobiol J
, vol.23
, Issue.2
, pp. 129-141
-
-
Siering, P.L.1
Clarke, J.M.2
Wilson, M.S.3
-
5
-
-
34247565196
-
Effects of abiotic factors on the phylogenetic diversity of bacterial communities in acidic thermal springs
-
Mathur J, Bizzoco RW, Ellis DG, Lipson DA, Poole AW, et al. (2007) Effects of abiotic factors on the phylogenetic diversity of bacterial communities in acidic thermal springs. Appl Environ Microbiol 73 (8): 2612-2623.
-
(2007)
Appl Environ Microbiol
, vol.73
, Issue.8
, pp. 2612-2623
-
-
Mathur, J.1
Bizzoco, R.W.2
Ellis, D.G.3
Lipson, D.A.4
Poole, A.W.5
-
6
-
-
58149204132
-
Bacterial community composition in thermophilic microbial mats from five hot springs in central Tibet
-
Lau MCY, Aitchison JC, Pointing SB, (2009) Bacterial community composition in thermophilic microbial mats from five hot springs in central Tibet. Extremophiles 13: 139-149.
-
(2009)
Extremophiles
, vol.13
, pp. 139-149
-
-
Lau, M.C.Y.1
Aitchison, J.C.2
Pointing, S.B.3
-
7
-
-
84871260129
-
Acidophiles
-
Wiley J and Sons (eds), Accessed 11 November 2011. doi: 10.1038/npg.els.0000336
-
Norris PR (2001) Acidophiles. Wiley J and Sons (eds). In: Encyclopedia of life sciences. http://els.net, 1-6. Accessed 11 November 2011. doi: 10.1038/npg.els.0000336.
-
(2001)
Encyclopedia of life sciences
, pp. 1-6
-
-
Norris, P.R.1
-
8
-
-
70449106265
-
Microbial diversity of boron-rich volcanic hot springs of St. Lucia, Lesser Antilles
-
Stout LM, Blake RE, Greenwood JP, Martini AM, Rose EC, (2009) Microbial diversity of boron-rich volcanic hot springs of St. Lucia, Lesser Antilles. FEMS Microbiol Ecol 70 (3): 402-412.
-
(2009)
FEMS Microbiol Ecol
, vol.70
, Issue.3
, pp. 402-412
-
-
Stout, L.M.1
Blake, R.E.2
Greenwood, J.P.3
Martini, A.M.4
Rose, E.C.5
-
9
-
-
26844561468
-
Diversity and functional analysis of bacterial communities associated with natural hydrocarbon seeps in acidic soils at rainbow springs, Yellowstone National Park
-
Hamamura N, Olson SH, Ward DM, Inskeep WP, (2005) Diversity and functional analysis of bacterial communities associated with natural hydrocarbon seeps in acidic soils at rainbow springs, Yellowstone National Park. Appl Environ Microbiol 71 (10): 5943-5950.
-
(2005)
Appl Environ Microbiol
, vol.71
, Issue.10
, pp. 5943-5950
-
-
Hamamura, N.1
Olson, S.H.2
Ward, D.M.3
Inskeep, W.P.4
-
10
-
-
0034304278
-
Microbiology of acidic, geothermal springs of Montserrat: environmental rDNA analysis
-
Burton NP, Norris PR, (2000) Microbiology of acidic, geothermal springs of Montserrat: environmental rDNA analysis. Extremophiles 4 (5): 315-320.
-
(2000)
Extremophiles
, vol.4
, Issue.5
, pp. 315-320
-
-
Burton, N.P.1
Norris, P.R.2
-
11
-
-
79251539239
-
Eukaryotic microbial diversity of phototrophic microbial mats in two Icelandic geothermal hot springs
-
Aguilera A, Souza-Egipsy V, González-Toril E, Rendueles O, Amils R, (2010) Eukaryotic microbial diversity of phototrophic microbial mats in two Icelandic geothermal hot springs. Int Microbiol 13 (1): 21-32.
-
(2010)
Int Microbiol
, vol.13
, Issue.1
, pp. 21-32
-
-
Aguilera, A.1
Souza-Egipsy, V.2
González-Toril, E.3
Rendueles, O.4
Amils, R.5
-
12
-
-
77957682240
-
Phylogenetic analysis of the bacterial community in a geothermal spring, Rupi Basin, Bulgaria
-
Tomova I, Dimitrina-Lyutskanova M, Pascual J, Petrov P, Kambourova M, (2010) Phylogenetic analysis of the bacterial community in a geothermal spring, Rupi Basin, Bulgaria. World J Microbiol Biotechnol 26 (11): 2019-2028.
-
(2010)
World J Microbiol Biotechnol
, vol.26
, Issue.11
, pp. 2019-2028
-
-
Tomova, I.1
Dimitrina-Lyutskanova, M.2
Pascual, J.3
Petrov, P.4
Kambourova, M.5
-
13
-
-
79960754659
-
Diversity of Archaea in Icelandic hot springs based on 16S rRNA and chaperonin genes
-
Mirete S, De Figueras CG, González-Pastor JE, (2011) Diversity of Archaea in Icelandic hot springs based on 16S rRNA and chaperonin genes. FEMS Microbiol Ecol 77 (1): 165-175.
-
(2011)
FEMS Microbiol Ecol
, vol.77
, Issue.1
, pp. 165-175
-
-
Mirete, S.1
De Figueras, C.G.2
González-Pastor, J.E.3
-
14
-
-
79955006053
-
Archaeal diversity in a terrestrial acidic spring field revealed by a novel PCR primer targeting archaeal 16S rRNA genes
-
Kato S, Itoh T, Yamagishi A, (2011) Archaeal diversity in a terrestrial acidic spring field revealed by a novel PCR primer targeting archaeal 16S rRNA genes. FEMS Microbiol Lett 319 (1): 34-43.
-
(2011)
FEMS Microbiol Lett
, vol.319
, Issue.1
, pp. 34-43
-
-
Kato, S.1
Itoh, T.2
Yamagishi, A.3
-
15
-
-
72949116371
-
Phylogenetic diversity and metabolic potential revealed in a glacier ice metagenome
-
Simon C, Wiezer A, Strittmatter AW, Daniel R, (2009) Phylogenetic diversity and metabolic potential revealed in a glacier ice metagenome. Appl Environ Microbiol 75 (23): 7519-7526.
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.23
, pp. 7519-7526
-
-
Simon, C.1
Wiezer, A.2
Strittmatter, A.W.3
Daniel, R.4
-
16
-
-
79951810387
-
Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries
-
Xie W, Wang F, Guo L, Chen Z, Sievert SM, et al. (2011) Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries. ISME J 5: 414-426.
-
(2011)
ISME J
, vol.5
, pp. 414-426
-
-
Xie, W.1
Wang, F.2
Guo, L.3
Chen, Z.4
Sievert, S.M.5
-
17
-
-
84355162257
-
Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm
-
Jones DS, Albrecht HL, Dawson KS, Schaperdoth I, Freeman KH, et al. (2012) Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm. ISME J 6: 158-170.
-
(2012)
ISME J
, vol.6
, pp. 158-170
-
-
Jones, D.S.1
Albrecht, H.L.2
Dawson, K.S.3
Schaperdoth, I.4
Freeman, K.H.5
-
18
-
-
36249002945
-
Novel thermophilic and thermostable lipolytic enzymes from a Thailand hot spring metagenomic library
-
Tirawongsaroj P, Sriprang R, Harnpicharnchai P, Thongaram T, Champreda V, et al. (2008) Novel thermophilic and thermostable lipolytic enzymes from a Thailand hot spring metagenomic library. J Biotechnol 133: 42-49.
-
(2008)
J Biotechnol
, vol.133
, pp. 42-49
-
-
Tirawongsaroj, P.1
Sriprang, R.2
Harnpicharnchai, P.3
Thongaram, T.4
Champreda, V.5
-
19
-
-
55249118224
-
Advances in recovery of novel biocatalysts from metagenomes
-
Steele HE, Jaeger JE, Daniel R, Streit WR, (2009) Advances in recovery of novel biocatalysts from metagenomes. J Mol Microbiol Biotechnol 16 (1-2): 25-37.
-
(2009)
J Mol Microbiol Biotechnol
, vol.16
, Issue.1-2
, pp. 25-37
-
-
Steele, H.E.1
Jaeger, J.E.2
Daniel, R.3
Streit, W.R.4
-
20
-
-
84655169688
-
A novel cold active esterase derived from high Andean forest soil metagenome
-
Jiménez DJ, Montaña JS, Alvarez D, Baena S, (2012) A novel cold active esterase derived from high Andean forest soil metagenome. World J Microbiol Biotechnol 28: 361-370.
-
(2012)
World J Microbiol Biotechnol
, vol.28
, pp. 361-370
-
-
Jiménez, D.J.1
Montaña, J.S.2
Alvarez, D.3
Baena, S.4
-
21
-
-
79953025661
-
Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice
-
Swanson KS, Dowd SE, Suchodolski JS, Middelbos IS, Vester BM, et al. (2011) Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice. ISME J 5: 639-649.
-
(2011)
ISME J
, vol.5
, pp. 639-649
-
-
Swanson, K.S.1
Dowd, S.E.2
Suchodolski, J.S.3
Middelbos, I.S.4
Vester, B.M.5
-
22
-
-
78751579207
-
Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara
-
Quaiser A, Zivanovic Y, Moreira D, Lopez-Garcia P, (2011) Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara. ISME J 5 (2): 285-304.
-
(2011)
ISME J
, vol.5
, Issue.2
, pp. 285-304
-
-
Quaiser, A.1
Zivanovic, Y.2
Moreira, D.3
Lopez-Garcia, P.4
-
23
-
-
84857992186
-
Taxonomic and functional assignment of cloned sequences from high Andean forest soil metagenome
-
Montaña JS, Jiménez DJ, Hernández M, Ángel T, Baena S, (2012) Taxonomic and functional assignment of cloned sequences from high Andean forest soil metagenome. A van Leeuw J Microb 101: 205-215.
-
(2012)
A Van Leeuw J Microb
, vol.101
, pp. 205-215
-
-
Montaña, J.S.1
Jiménez, D.J.2
Hernández, M.3
Ángel, T.4
Baena, S.5
-
24
-
-
84862665622
-
The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics
-
Andreote FD, Jiménez DJ, Chaves D, Dias ACF, Luvizotto DM, et al. (2012) The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics. PLoS One 7 (6): e38600.
-
(2012)
PLoS One
, vol.7
, Issue.6
-
-
Andreote, F.D.1
Jiménez, D.J.2
Chaves, D.3
Dias, A.C.F.4
Luvizotto, D.M.5
-
25
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
-
26
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 (17): 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
27
-
-
53549118607
-
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, et al. (2008) The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9 (386): 1-8.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.386
, pp. 1-8
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.M.5
-
28
-
-
74049132798
-
WebCARMA: A web application for the functional and taxonomic classification of unassembled metagenomic reads
-
Gerlach W, Jünemann S, Tille F, Goesmann A, Stoye J, (2009) WebCARMA: A web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics 10: 430.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 430
-
-
Gerlach, W.1
Jünemann, S.2
Tille, F.3
Goesmann, A.4
Stoye, J.5
-
29
-
-
84862637604
-
Ribosomal RNA identification in metagenomic and metatranscriptomic datasets
-
de Bruijn, FL (ed)
-
Huang Y, Li W, Finn PW, Perkins DL (2009) Ribosomal RNA identification in metagenomic and metatranscriptomic datasets. In: de Bruijn, FL (ed). Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches, 784.
-
(2009)
Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches
, pp. 784
-
-
Huang, Y.1
Li, W.2
Finn, P.W.3
Perkins, D.L.4
-
30
-
-
54549106898
-
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
-
Liu Z, DeSantis TZ, Andersen GL, Knight R, (2008) Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res 36 (18): e120.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.18
-
-
Liu, Z.1
DeSantis, T.Z.2
Andersen, G.L.3
Knight, R.4
-
31
-
-
0033956060
-
The COG database: a tool for genome-scale analysis of protein functions and evolution
-
Tatusov RL, Galperin MY, Natale DA, Koonin EV, (2001) The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucl Acids Res 28 (1): 33-36.
-
(2001)
Nucl Acids Res
, vol.28
, Issue.1
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
32
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M, (2004) The KEGG resource for deciphering the genome. Nucleic Acids Res 32: D277-D280.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
33
-
-
33847702910
-
MEGAN analysis of metagenomic data
-
Huson DH, Auch AF, Qi J, Schuster SC, (2007) MEGAN analysis of metagenomic data. Genome Res 17: 377-386.
-
(2007)
Genome Res
, vol.17
, pp. 377-386
-
-
Huson, D.H.1
Auch, A.F.2
Qi, J.3
Schuster, S.C.4
-
34
-
-
84871348433
-
-
IDEAM, Atlas de radiación solar en Colombia. Mapas de radiación ultravioleta banda 305nm, Accessed 16 April 2012
-
IDEAM (2005) Atlas de radiación solar en Colombia. Mapas de radiación ultravioleta banda 305nm. https://documentacion.ideam.gov.co/openbiblio/Bvirtual/019649/4-RadiacionUltravioleta.pdf. Accessed 16 April 2012.
-
(2005)
-
-
-
35
-
-
0022468015
-
Direct measurement of femtogram amounts of DNA in cells and chloroplasts by quantitative microspectrofluorometry
-
Lawrence ME, Possingham JV, (1986) Direct measurement of femtogram amounts of DNA in cells and chloroplasts by quantitative microspectrofluorometry. J Histochem Cytochem 34: 761.
-
(1986)
J Histochem Cytochem
, vol.34
, pp. 761
-
-
Lawrence, M.E.1
Possingham, J.V.2
-
36
-
-
84934435503
-
Whole genome amplification with Phi29 DNA polymerase to enable genetic or genomic analysis of samples of low DNA yield
-
Silander K, Saarela J, (2008) Whole genome amplification with Phi29 DNA polymerase to enable genetic or genomic analysis of samples of low DNA yield. Methods Mol Biol 439: 1-18.
-
(2008)
Methods Mol Biol
, vol.439
, pp. 1-18
-
-
Silander, K.1
Saarela, J.2
-
37
-
-
0038781878
-
Unbiased whole-genome amplification directly from clinical samples
-
Hosono S, Faruqi AF, Dean FB, Du Y, Sun Z, Wu X, Du J, Kingsmore SF, Egholm M, Lasken RS, (2003) Unbiased whole-genome amplification directly from clinical samples. Genome Re 13 (5): 954-64.
-
(2003)
Genome Re
, vol.13
, Issue.5
, pp. 954-964
-
-
Hosono, S.1
Faruqi, A.F.2
Dean, F.B.3
Du, Y.4
Sun, Z.5
Wu, X.6
Du, J.7
Kingsmore, S.F.8
Egholm, M.9
Lasken, R.S.10
-
38
-
-
78149423315
-
Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function
-
Inskeep WP, Rusch DB, Jay ZJ, Herrgard MJ, Kozubal MA, et al. (2010) Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function. PLoS One 5 (3): e9773.
-
(2010)
PLoS One
, vol.5
, Issue.3
-
-
Inskeep, W.P.1
Rusch, D.B.2
Jay, Z.J.3
Herrgard, M.J.4
Kozubal, M.A.5
-
39
-
-
33745595097
-
Using pyrosequencing to shed light on deep mine microbial ecology
-
Edwards RA, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, et al. (2006) Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics 7: 57.
-
(2006)
BMC Genomics
, vol.7
, pp. 57
-
-
Edwards, R.A.1
Rodriguez-Brito, B.2
Wegley, L.3
Haynes, M.4
Breitbart, M.5
-
40
-
-
77955929948
-
The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses
-
Yergeau E, Hogues H, Whyte LG, Greer CW, (2010) The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses. ISME J 4: 1206-1214.
-
(2010)
ISME J
, vol.4
, pp. 1206-1214
-
-
Yergeau, E.1
Hogues, H.2
Whyte, L.G.3
Greer, C.W.4
-
42
-
-
38649128157
-
Effects of template sequence and secondary structure on DNA-templated reactivity
-
Snyder TM, Tse BN, Liu DR, (2008) Effects of template sequence and secondary structure on DNA-templated reactivity. J Am Chem Soc 130: 1392-1401.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 1392-1401
-
-
Snyder, T.M.1
Tse, B.N.2
Liu, D.R.3
-
43
-
-
78649707158
-
Multiple displacement amplification compromises quantitative analysis of metagenomes
-
Yilmaz S, Allgaier M, Hugenholtz P, (2010) Multiple displacement amplification compromises quantitative analysis of metagenomes. Nature Methods 7: 943-944.
-
(2010)
Nature Methods
, vol.7
, pp. 943-944
-
-
Yilmaz, S.1
Allgaier, M.2
Hugenholtz, P.3
-
44
-
-
84863004113
-
Reconstruction of Ribosomal RNA Genes from Metagenomic Data
-
Fan L, McElroy K, Thomas T, (2012) Reconstruction of Ribosomal RNA Genes from Metagenomic Data. PLoS One7 (6): e39948.
-
(2012)
PLoS One
, vol.7
, Issue.6
-
-
Fan, L.1
McElroy, K.2
Thomas, T.3
-
45
-
-
84862259392
-
Analysis of 16S rRNA environmental sequences using MEGAN
-
Mitra S, Stärk M, Huson DH, (2011) Analysis of 16S rRNA environmental sequences using MEGAN. BMC Genomics 12(Suppl 3): S17.
-
(2011)
BMC Genomics
, vol.12
-
-
Mitra, S.1
Stärk, M.2
Huson, D.H.3
-
46
-
-
80051840169
-
Metagenomics of the water column in the pristine upper course of the Amazon River
-
Ghai R, Rodriguez-Valera F, McMahon KD, Toyama D, Rinke R, et al. (2011) Metagenomics of the water column in the pristine upper course of the Amazon River. PLoS One 6 (8): e23785.
-
(2011)
PLoS One
, vol.6
, Issue.8
-
-
Ghai, R.1
Rodriguez-Valera, F.2
McMahon, K.D.3
Toyama, D.4
Rinke, R.5
-
47
-
-
60849103082
-
Methods for comparative metagenomics
-
Huson DH, Richter DC, Mitra S, Auch AF, Schuster SC, (2009) Methods for comparative metagenomics. BMC Bioinformatics 10Suppl 1: S12.
-
(2009)
BMC Bioinformatics
, vol.10
-
-
Huson, D.H.1
Richter, D.C.2
Mitra, S.3
Auch, A.F.4
Schuster, S.C.5
-
48
-
-
58149528971
-
MetaMine - A tool to detect and analyses gene patterns in their environmental context
-
Bohnebeck U, Lombardot T, Kottmann R, Glöckner FO, (2008) MetaMine - A tool to detect and analyses gene patterns in their environmental context. BMC Bioinformatics 9: 459.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 459
-
-
Bohnebeck, U.1
Lombardot, T.2
Kottmann, R.3
Glöckner, F.O.4
-
49
-
-
77954781623
-
Deriving enzymatic and taxonomic signatures of metagenomes from short read data
-
Weingart U, Persi E, Gophna U, Horn D, (2010) Deriving enzymatic and taxonomic signatures of metagenomes from short read data. BMC Bioinformatics 11: 390.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 390
-
-
Weingart, U.1
Persi, E.2
Gophna, U.3
Horn, D.4
-
50
-
-
78651441275
-
MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks
-
Gori F, Folino G, Jetten MSM, Marchiori E, (2011) MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks. Bioinformatics 27 (2): 196-203.
-
(2011)
Bioinformatics
, vol.27
, Issue.2
, pp. 196-203
-
-
Gori, F.1
Folino, G.2
Jetten, M.S.M.3
Marchiori, E.4
-
51
-
-
79960560749
-
Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential
-
Klatt CG, Wood JM, Rusch DB, Bateson MM, Hamamura N, et al. (2011) Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential. ISME J 5: 1262-1278.
-
(2011)
ISME J
, vol.5
, pp. 1262-1278
-
-
Klatt, C.G.1
Wood, J.M.2
Rusch, D.B.3
Bateson, M.M.4
Hamamura, N.5
-
52
-
-
0141592708
-
Bacterial diversity and sulfur cycling in a mesophilic sulfide-rich spring
-
Elshahed MS, Senko JM, Najar FZ, Kenton SM, Roe BA, et al. (2003) Bacterial diversity and sulfur cycling in a mesophilic sulfide-rich spring. Appl Environ Microbiol 69: 5609-5621.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 5609-5621
-
-
Elshahed, M.S.1
Senko, J.M.2
Najar, F.Z.3
Kenton, S.M.4
Roe, B.A.5
-
53
-
-
34250196460
-
Microbial communities and geochemical dynamics in an extremely acidic, metal-rich stream at an abandoned sulfide mine (Huelva, Spain) underpinned by two functional primary production systems
-
Rowe OF, Sanchez-España J, Hallberg KB, Johnson DB, (2007) Microbial communities and geochemical dynamics in an extremely acidic, metal-rich stream at an abandoned sulfide mine (Huelva, Spain) underpinned by two functional primary production systems. Environ Microbiol 9: 1761-1771.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1761-1771
-
-
Rowe, O.F.1
Sanchez-España, J.2
Hallberg, K.B.3
Johnson, D.B.4
-
55
-
-
84864041283
-
Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
-
Liu B, Gibbons T, Ghodsi M, Treangen T, Pop M, (2011) Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences. BMC Genomics 12Suppl 2: S4.
-
(2011)
BMC Genomics
, vol.12
-
-
Liu, B.1
Gibbons, T.2
Ghodsi, M.3
Treangen, T.4
Pop, M.5
-
56
-
-
36649016031
-
Regulation of a novel Acidithiobacillus caldus gene cluster involved in metabolism of reduced inorganic sulfur compounds
-
Rzhepishevska OI, Valdés J, Marcinkeviciene L, Gallardo CA, Meskys R, et al. (2007) Regulation of a novel Acidithiobacillus caldus gene cluster involved in metabolism of reduced inorganic sulfur compounds. Appl Environ Microbiol 73 (22): 7367-7372.
-
(2007)
Appl Environ Microbiol
, vol.73
, Issue.22
, pp. 7367-7372
-
-
Rzhepishevska, O.I.1
Valdés, J.2
Marcinkeviciene, L.3
Gallardo, C.A.4
Meskys, R.5
-
57
-
-
0032489630
-
Distribution of Thiobacillus ferrooxidans and Leptospirillum ferrooxidans: Implications for generation of acid mine drainage
-
Schrenk MO, Edwards KJ, Goodman RM, Hamers RJ, Banfield JF, (1998) Distribution of Thiobacillus ferrooxidans and Leptospirillum ferrooxidans: Implications for generation of acid mine drainage. Science 279 (5356): 1519-1522.
-
(1998)
Science
, vol.279
, Issue.5356
, pp. 1519-1522
-
-
Schrenk, M.O.1
Edwards, K.J.2
Goodman, R.M.3
Hamers, R.J.4
Banfield, J.F.5
-
58
-
-
76649117437
-
A case of Legionella pneumonia linked to a hot spring facility in Gunma Prefecture, Japan
-
Kurosawa H, Fujita M, Kobatake S, Kimura H, Ohshima M, et al. (2010) A case of Legionella pneumonia linked to a hot spring facility in Gunma Prefecture, Japan. Jpn J Infect Dis 63 (1): 78-79.
-
(2010)
Jpn J Infect Dis
, vol.63
, Issue.1
, pp. 78-79
-
-
Kurosawa, H.1
Fujita, M.2
Kobatake, S.3
Kimura, H.4
Ohshima, M.5
-
59
-
-
78149406224
-
Identification of Legionella londiniensis isolated from hot spring water samples in Shizuoka, Japan, and cytotoxicity of isolates
-
Furuhata K, Ogihara K, Ishizaki N, Oonaka K, Yoshida Y, et al. (2010) Identification of Legionella londiniensis isolated from hot spring water samples in Shizuoka, Japan, and cytotoxicity of isolates. J Infect Chemother 16 (5): 367-371.
-
(2010)
J Infect Chemother
, vol.16
, Issue.5
, pp. 367-371
-
-
Furuhata, K.1
Ogihara, K.2
Ishizaki, N.3
Oonaka, K.4
Yoshida, Y.5
-
60
-
-
77956403235
-
Microbial diversity in acid mine drainage of Xiang Mountain sulfide mine, Anhui Province, China
-
Hao C, Wang L, Gao Y, Zhang L, Dong H, (2010) Microbial diversity in acid mine drainage of Xiang Mountain sulfide mine, Anhui Province, China. Extremophiles. 14 (5): 465-74.
-
(2010)
Extremophiles
, vol.14
, Issue.5
, pp. 465-474
-
-
Hao, C.1
Wang, L.2
Gao, Y.3
Zhang, L.4
Dong, H.5
-
61
-
-
78650617907
-
Microbial community structure across the tree of life in the extreme Río Tinto
-
Amaral-Zettler LA, Zettler ER, Theroux SM, Palacios C, Aguilera A, et al. (2011) Microbial community structure across the tree of life in the extreme Río Tinto. ISME J 5 (1): 42-50.
-
(2011)
ISME J
, vol.5
, Issue.1
, pp. 42-50
-
-
Amaral-Zettler, L.A.1
Zettler, E.R.2
Theroux, S.M.3
Palacios, C.4
Aguilera, A.5
-
62
-
-
52949105398
-
Carbon, iron and sulfur metabolism in acidophilic micro-organisms
-
Johnson DB, Hallberg KB, (2009) Carbon, iron and sulfur metabolism in acidophilic micro-organisms. Adv Microb Physiol 54: 201-255.
-
(2009)
Adv Microb Physiol
, vol.54
, pp. 201-255
-
-
Johnson, D.B.1
Hallberg, K.B.2
-
63
-
-
77956410876
-
Genus Acidiphilium
-
Boone, DR, Castenholz RW, Garrity GM (ed), 2nd edn. Springer, New York
-
Hiraishi A, Imhoff JF (2005) Genus Acidiphilium. In: Boone, DR, Castenholz RW, Garrity GM (ed). Bergey's manual of systematic bacteriology, vol 2, 2nd edn. Springer, New York, 54-61.
-
(2005)
Bergey's manual of systematic bacteriology
, vol.2
, pp. 54-61
-
-
Hiraishi, A.1
Imhoff, J.F.2
-
64
-
-
83355173191
-
Metagenomic analysis of bacterial diversity of Siloam hot water spring, Limpopo, South Africa
-
Tekere M, Lötter A, Olivier J, Jonker N, Venter S, (2011) Metagenomic analysis of bacterial diversity of Siloam hot water spring, Limpopo, South Africa. Afr. J. Biotechnol. 10 (78): 18005-18012.
-
(2011)
Afr. J. Biotechnol
, vol.10
, Issue.78
, pp. 18005-18012
-
-
Tekere, M.1
Lötter, A.2
Olivier, J.3
Jonker, N.4
Venter, S.5
-
65
-
-
84871276132
-
Microbial iron cycling in acidic geothermal springs of Yellowstone National Park: integrating molecular surveys, geochemical processes, and isolation of novel Fe-active microorganisms
-
Kozubal MA, Macur RE, Jay ZJ, Beam JP, Malfatti SA, et al. (2012) Microbial iron cycling in acidic geothermal springs of Yellowstone National Park: integrating molecular surveys, geochemical processes, and isolation of novel Fe-active microorganisms. Front. Microbio. 3: 109.
-
(2012)
Front. Microbio
, vol.3
, pp. 109
-
-
Kozubal, M.A.1
Macur, R.E.2
Jay, Z.J.3
Beam, J.P.4
Malfatti, S.A.5
-
66
-
-
79959576957
-
Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions
-
Belnap CP, Pan C, Denef VJ, Samatova NF, Hettich RL, et al. (2011) Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions. ISME J 5: 1152-1161.
-
(2011)
ISME J
, vol.5
, pp. 1152-1161
-
-
Belnap, C.P.1
Pan, C.2
Denef, V.J.3
Samatova, N.F.4
Hettich, R.L.5
-
67
-
-
72649088719
-
Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm
-
Brazelton WJ, Baross JA, (2009) Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm. ISME J 3 (12): 1420-1424.
-
(2009)
ISME J
, vol.3
, Issue.12
, pp. 1420-1424
-
-
Brazelton, W.J.1
Baross, J.A.2
-
68
-
-
1542344429
-
DEAD-box proteins: the driving forces behind RNA metabolism
-
Rocak S, Linder P, (2004) DEAD-box proteins: the driving forces behind RNA metabolism. Nat Rev Mol Cell Biol 5 (3): 232-241.
-
(2004)
Nat Rev Mol Cell Biol
, vol.5
, Issue.3
, pp. 232-241
-
-
Rocak, S.1
Linder, P.2
-
69
-
-
84860375761
-
Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes
-
Dos Santos PC, Fang Z, Mason SW, Setubal JC, Dixon R, (2012) Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes. BMC Genomics 13: 162.
-
(2012)
BMC Genomics
, vol.13
, pp. 162
-
-
Dos Santos, P.C.1
Fang, Z.2
Mason, S.W.3
Setubal, J.C.4
Dixon, R.5
-
70
-
-
33947152438
-
Nitrogen fixation by reductively dechlorinating bacteria
-
Ju X, Zhao L, Sun B, (2008) Nitrogen fixation by reductively dechlorinating bacteria. Environ Microbiol 9 (4): 1078-1083.
-
(2008)
Environ Microbiol
, vol.9
, Issue.4
, pp. 1078-1083
-
-
Ju, X.1
Zhao, L.2
Sun, B.3
-
71
-
-
45149114537
-
Homology modeling of dissimilatory APS reductases (AprBA) of sulfur-33 oxidizing and sulfate-reducing prokaryotes
-
Meyer B, Kuever J, (2008) Homology modeling of dissimilatory APS reductases (AprBA) of sulfur-33 oxidizing and sulfate-reducing prokaryotes. PLoS One 3 (1): e1514.
-
(2008)
PLoS One
, vol.3
, Issue.1
-
-
Meyer, B.1
Kuever, J.2
-
72
-
-
11144243173
-
The biocatalytic potential of extremophiles and extremozymes
-
Gomes J, Steiner W, (2004) The biocatalytic potential of extremophiles and extremozymes. Food Technol Biotechnol 42 (4): 223-235.
-
(2004)
Food Technol Biotechnol
, vol.42
, Issue.4
, pp. 223-235
-
-
Gomes, J.1
Steiner, W.2
-
73
-
-
79957973036
-
Extremophiles: a novel source of industrially important enzymes
-
Kumar L, Awasthi G, Singh B, (2011) Extremophiles: a novel source of industrially important enzymes. Biotech 10 (2): 121-135.
-
(2011)
Biotech
, vol.10
, Issue.2
, pp. 121-135
-
-
Kumar, L.1
Awasthi, G.2
Singh, B.3
-
74
-
-
27844584769
-
UV irradiation induces homologous recombination genes in the model archaeon, Halobacterium sp. NRC-1
-
McCready S, Müller JA, Boubriak I, Berquist BR, Ng WL, et al. (2005) UV irradiation induces homologous recombination genes in the model archaeon, Halobacterium sp. NRC-1. Saline Systems 1: 3.
-
(2005)
Saline Systems
, vol.1
, pp. 3
-
-
McCready, S.1
Müller, J.A.2
Boubriak, I.3
Berquist, B.R.4
Ng, W.L.5
-
75
-
-
38049173021
-
Homologous recombination in DNA repair and DNA damage tolerance
-
Li X, Heyer WD, (2008) Homologous recombination in DNA repair and DNA damage tolerance. Cell Res 18 (1): 99-113.
-
(2008)
Cell Res
, vol.18
, Issue.1
, pp. 99-113
-
-
Li, X.1
Heyer, W.D.2
-
76
-
-
66249147580
-
Why do bacteria engage in homologous recombination?
-
Vos M, (2009) Why do bacteria engage in homologous recombination? Trends Microbiol 17 (6): 226-232.
-
(2009)
Trends Microbiol
, vol.17
, Issue.6
, pp. 226-232
-
-
Vos, M.1
-
77
-
-
66649089244
-
Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
-
Poretsky RS, Hewson I, Sun S, Allen AE, Zehr JP, et al. (2009) Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre. Environ Microbiol 11 (6): 1358-1375.
-
(2009)
Environ Microbiol
, vol.11
, Issue.6
, pp. 1358-1375
-
-
Poretsky, R.S.1
Hewson, I.2
Sun, S.3
Allen, A.E.4
Zehr, J.P.5
-
78
-
-
79956287318
-
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean
-
Shi Y, Tyson GW, Eppley JM, DeLong EF, (2011) Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean. ISME J 5: 999-1013.
-
(2011)
ISME J
, vol.5
, pp. 999-1013
-
-
Shi, Y.1
Tyson, G.W.2
Eppley, J.M.3
DeLong, E.F.4
-
79
-
-
79960564246
-
Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat
-
Liu Z, Klatt CG, Wood JM, Rusch DB, Ludwig M, et al. (2011) Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat. ISME J 5: 1279-1290.
-
(2011)
ISME J
, vol.5
, pp. 1279-1290
-
-
Liu, Z.1
Klatt, C.G.2
Wood, J.M.3
Rusch, D.B.4
Ludwig, M.5
-
80
-
-
40149098974
-
Microbial Ecology of Four Coral Atolls in the Northern Line Islands
-
Dinsdale EA, Pantos O, Smriga S, Edwards RA, Angly F, et al. (2008) Microbial Ecology of Four Coral Atolls in the Northern Line Islands. PLoS One 3 (2): e1584.
-
(2008)
PLoS One
, vol.3
, Issue.2
-
-
Dinsdale, E.A.1
Pantos, O.2
Smriga, S.3
Edwards, R.A.4
Angly, F.5
-
81
-
-
52449114817
-
Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities
-
Gilbert JA, Field D, Huang Y, Edwards R, Li W, et al. (2008) Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities. PLoS One 3 (8): e3042.
-
(2008)
PLoS One
, vol.3
, Issue.8
-
-
Gilbert, J.A.1
Field, D.2
Huang, Y.3
Edwards, R.4
Li, W.5
-
82
-
-
77952431173
-
Strategies for enhancing the effectiveness of metagenomic based enzyme discovery in lignocellulolytic microbial communities
-
De Angelis KM, Gladden JM, Allgaier M, Dhaeseleer P, Fortney JL, et al. (2010) Strategies for enhancing the effectiveness of metagenomic based enzyme discovery in lignocellulolytic microbial communities. Bioenerg Res 3 (2): 146-158.
-
(2010)
Bioenerg Res
, vol.3
, Issue.2
, pp. 146-158
-
-
De Angelis, K.M.1
Gladden, J.M.2
Allgaier, M.3
Dhaeseleer, P.4
Fortney, J.L.5
|