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Volumn 12, Issue SUPPL. 3, 2011, Pages

Analysis of 16S rRNA environmental sequences using MEGAN

Author keywords

[No Author keywords available]

Indexed keywords

16S RRNA; 16S RRNA SEQUENCES; AMPLICONS; ANALYSIS TOOLS; ENVIRONMENTAL SAMPLE; METAGENOMES; METAGENOMICS;

EID: 84862259392     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1186/1471-2164-12-S3-S17     Document Type: Conference Paper
Times cited : (61)

References (21)
  • 1
    • 0001271789 scopus 로고    scopus 로고
    • Phylogenetic structure of the prokaryotic domain: The primary kingdoms
    • Woese CR, Fox GE: Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci USA 1977, 74(11):5088-90.
    • Proc Natl Acad Sci USA 1977 , vol.74 , Issue.11 , pp. 5088-5090
    • Woese, C.R.1    Fox, G.E.2
  • 3
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss PD, Handelsman J: Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 2005, 71(3):1501-1506.
    • (2005) Appl Environ Microbiol , vol.71 , Issue.3 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 4
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al: Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities. Appl Environ Microbiol 2009, 75(23):7537-41.
    • (2009) Appl Environ Microbiol , vol.75 , Issue.23 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5
  • 5
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, Fuchs B, Ludwig W, et al: SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucl. Acids Res 2007, 35(21):7188-96.
    • (2007) Nucl. Acids Res , vol.35 , Issue.21 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.4    Ludwig, W.5
  • 6
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
    • Cole JR, Wang Q, Cardenas E, Fish J, Chai B, et al: The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucl. Acids Res 2009, 37(suppl 1):D141-D145.
    • (2009) Nucl. Acids Res , vol.37 , Issue.SUPPL. 1
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5
  • 7
    • 78751524632 scopus 로고    scopus 로고
    • EstimateS: Statistical estimation of species richness and shared species from samples
    • published at
    • Colwell RK: EstimateS: Statistical estimation of species richness and shared species from samples. Version 8.2. User's Guide and application 2009, published at: http://purl.oclc.org/estimates.
    • (2009) Version 8.2. User's Guide and Application
    • Colwell, R.K.1
  • 8
    • 77955179934 scopus 로고    scopus 로고
    • MLTreeMap - accurate maximum likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies
    • Stark M, Berger S, Stamatakis A, von Mering C: MLTreeMap - accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies. BMC Genomics 2010, 11:461+.
    • (2010) BMC Genomics , vol.11 , pp. 461
    • Stark, M.1    Berger, S.2    Stamatakis, A.3    Von, M.C.4
  • 9
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C, Hamady M, Knight R: UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 2006, 7:371.
    • (2006) BMC Bioinformatics , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 10
    • 77958610660 scopus 로고    scopus 로고
    • Pplacer: Linear time maximumlikelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
    • Matsen FA, Kodner RB, Armbrust EV: Pplacer: linear time maximumlikelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. BMC Bioinformatics 2010, 11:538+.
    • (2010) BMC Bioinformatics , vol.11 , pp. 538
    • Matsen, F.A.1    Kodner, R.B.2    Armbrust, E.V.3
  • 14
    • 84871626385 scopus 로고    scopus 로고
    • MEGAN Software. [http://www-ab.informatik.uni-tuebingen.de/software/ megan].
    • MEGAN Software
  • 16
    • 84871637670 scopus 로고    scopus 로고
    • ARB Software. [http://www.arb-silva.de/download/arb-files/].
    • ARB Software
  • 17
    • 84871635934 scopus 로고    scopus 로고
    • NCBI Website. [ftp://ftp.ncbi.nih.gov/pub/taxonomy/].
    • NCBI Website
  • 20
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server - A public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, et al: The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 2008, 9:386.
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'souza, M.3    Olson, R.4    Glass, E.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.