-
1
-
-
0001271789
-
Phylogenetic structure of the prokaryotic domain: The primary kingdoms
-
Woese CR, Fox GE: Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci USA 1977, 74(11):5088-90.
-
Proc Natl Acad Sci USA 1977
, vol.74
, Issue.11
, pp. 5088-5090
-
-
Woese, C.R.1
Fox, G.E.2
-
2
-
-
0002861821
-
Analyzing natural microbial populations by rRNA sequences
-
Pace N, Stahl D, Olsen G, Lane D: Analyzing natural microbial populations by rRNA sequences. American Society for Microbiology News 1985, 51:4-12.
-
(1985)
American Society for Microbiology News
, vol.51
, pp. 4-12
-
-
Pace, N.1
Stahl, D.2
Olsen, G.3
Lane, D.4
-
3
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss PD, Handelsman J: Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 2005, 71(3):1501-1506.
-
(2005)
Appl Environ Microbiol
, vol.71
, Issue.3
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
4
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al: Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities. Appl Environ Microbiol 2009, 75(23):7537-41.
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.23
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
-
5
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs B, Ludwig W, et al: SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucl. Acids Res 2007, 35(21):7188-96.
-
(2007)
Nucl. Acids Res
, vol.35
, Issue.21
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.4
Ludwig, W.5
-
6
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, et al: The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucl. Acids Res 2009, 37(suppl 1):D141-D145.
-
(2009)
Nucl. Acids Res
, vol.37
, Issue.SUPPL. 1
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
-
7
-
-
78751524632
-
EstimateS: Statistical estimation of species richness and shared species from samples
-
published at
-
Colwell RK: EstimateS: Statistical estimation of species richness and shared species from samples. Version 8.2. User's Guide and application 2009, published at: http://purl.oclc.org/estimates.
-
(2009)
Version 8.2. User's Guide and Application
-
-
Colwell, R.K.1
-
8
-
-
77955179934
-
MLTreeMap - accurate maximum likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies
-
Stark M, Berger S, Stamatakis A, von Mering C: MLTreeMap - accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies. BMC Genomics 2010, 11:461+.
-
(2010)
BMC Genomics
, vol.11
, pp. 461
-
-
Stark, M.1
Berger, S.2
Stamatakis, A.3
Von, M.C.4
-
9
-
-
33748713890
-
UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context
-
Lozupone C, Hamady M, Knight R: UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 2006, 7:371.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 371
-
-
Lozupone, C.1
Hamady, M.2
Knight, R.3
-
10
-
-
77958610660
-
Pplacer: Linear time maximumlikelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
-
Matsen FA, Kodner RB, Armbrust EV: Pplacer: linear time maximumlikelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. BMC Bioinformatics 2010, 11:538+.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 538
-
-
Matsen, F.A.1
Kodner, R.B.2
Armbrust, E.V.3
-
11
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, et al: QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010, 7(5):335-6.
-
(2010)
Nat Methods
, vol.7
, Issue.5
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
-
12
-
-
33847702910
-
MEGAN analysis of metagenomic data
-
Huson DH, Auch AF, Qi J, Schuster SC: MEGAN analysis of metagenomic data. Genome Res 2007, 17(3):377-386.
-
(2007)
Genome Res
, vol.17
, Issue.3
, pp. 377-386
-
-
Huson, D.H.1
Auch, A.F.2
Qi, J.3
Schuster, S.C.4
-
13
-
-
80052549504
-
Integrative analysis of environmental sequences using MEGAN4
-
Huson DH, Mitra S, Ruscheweyh HJ, Weber N, Schuster SC: Integrative analysis of environmental sequences using MEGAN4. Genome Res 2011, 21:1552-60.
-
(2011)
Genome Res
, vol.21
, pp. 1552-1560
-
-
Huson, D.H.1
Mitra, S.2
Ruscheweyh, H.J.3
Weber, N.4
Schuster, S.C.5
-
14
-
-
84871626385
-
-
MEGAN Software. [http://www-ab.informatik.uni-tuebingen.de/software/ megan].
-
MEGAN Software
-
-
-
15
-
-
23344442120
-
Obesity alters gut microbial ecology
-
Ley RE, Bäckhed F, Turnbaugh P, Lozupone CA, Knight RD, Gordon JI: Obesity alters gut microbial ecology. Proc Natl Acad Sci U S A 2005, 102(31):11070-5.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.31
, pp. 11070-11075
-
-
Ley, R.E.1
Bäckhed, F.2
Turnbaugh, P.3
Lozupone, C.A.4
Knight, R.D.5
Gordon, J.I.6
-
16
-
-
84871637670
-
-
ARB Software. [http://www.arb-silva.de/download/arb-files/].
-
ARB Software
-
-
-
17
-
-
84871635934
-
-
NCBI Website. [ftp://ftp.ncbi.nih.gov/pub/taxonomy/].
-
NCBI Website
-
-
-
18
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
19
-
-
13444304389
-
GenBank
-
Benson D, Karsch-Mizrachi I, Lipman D, Ostell J, Wheeler D: GenBank. Nucleic Acids Res 2005, 1(33 (Database issue)):D34-38.
-
(2005)
Nucleic Acids Res
, vol.1
, Issue.33
-
-
Benson, D.1
Karsch-Mizrachi, I.2
Lipman, D.3
Ostell, J.4
Wheeler, D.5
-
20
-
-
53549118607
-
The metagenomics RAST server - A public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, et al: The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 2008, 9:386.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'souza, M.3
Olson, R.4
Glass, E.M.5
-
21
-
-
74349110379
-
Using the Metagenomics RAST Server (MG-RAST) for analyzing shotgun metagenomes
-
pdb.prot5368+
-
Glass EM, Wilkening J, Wilke A, Antonopoulos D, Meyer F: Using the Metagenomics RAST Server (MG-RAST) for analyzing shotgun metagenomes. Cold Spring Harb Protoc 2010, 1:pdb.prot5368+.
-
(2010)
Cold Spring Harb Protoc
, vol.1
-
-
Glass, E.M.1
Wilkening, J.2
Wilke, A.3
Antonopoulos, D.4
Meyer, F.5
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