메뉴 건너뛰기




Volumn 39, Issue 9, 2012, Pages 843-852

Transcriptional regulation functions of nucleosome positioning: A survey

Author keywords

Alternative splicing; Chromatin; Gene expression; Nucleosome positioning; Transcriptional regulation

Indexed keywords

EUKARYOTA;

EID: 84870838653     PISSN: 10003282     EISSN: None     Source Type: Journal    
DOI: 10.3724/SP.J.1206.2011.00252     Document Type: Review
Times cited : (3)

References (74)
  • 1
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 Å resolution
    • DOI 10.1038/38444
    • Luger K, Mader A W, Richmond R K, et al. Crystal structure of the nucleosome core particle at 2.8̊ resolution. Nature, 1997, 389(6648): 251-260 (Pubitemid 27406632)
    • (1997) Nature , vol.389 , Issue.6648 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 2
    • 0037992395 scopus 로고    scopus 로고
    • The structure of DNA in the nucleosome core
    • DOI 10.1038/nature01595
    • Richmond T J, Davey C A. The structure of DNA in the nucleosome core. Nature, 2003, 423(6936): 145-150 (Pubitemid 36569532)
    • (2003) Nature , vol.423 , Issue.6936 , pp. 145-150
    • Richmond, T.J.1    Davey, C.A.2
  • 3
    • 34047111213 scopus 로고    scopus 로고
    • Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
    • DOI 10.1038/nature05632, PII NATURE05632
    • Albert I, Mavrich T N, Tomsho L P, et al. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature, 2007, 446(7135): 572-576 (Pubitemid 46514724)
    • (2007) Nature , vol.446 , Issue.7135 , pp. 572-576
    • Albert, I.1    Mavrich, T.N.2    Tomsho, L.P.3    Qi, J.4    Zanton, S.J.5    Schuster, S.C.6    Pugh, B.F.7
  • 4
    • 0033529565 scopus 로고    scopus 로고
    • Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
    • DOI 10.1016/S0092-8674(00)81958-3
    • Kornberg R D, Lorch Y. Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell, 1999, 98(3): 285-294 (Pubitemid 29380564)
    • (1999) Cell , vol.98 , Issue.3 , pp. 285-294
    • Kornberg, R.D.1    Lorch, Y.2
  • 5
    • 60349089645 scopus 로고    scopus 로고
    • Nucleosome positioning and gene regulation: Advances through genomics
    • Jiang C, Pugh B F. Nucleosome positioning and gene regulation: advances through genomics. Nat Rev Gene, 2009, 10(3): 161-172
    • (2009) Nat Rev Gene , vol.10 , Issue.3 , pp. 161-172
    • Jiang, C.1    Pugh, B.F.2
  • 6
    • 68349125112 scopus 로고    scopus 로고
    • What controls nucleosome positions?
    • Segal E, Widom J. What controls nucleosome positions?. Trends in Genetics, 2009, 25(8): 335-343
    • (2009) Trends in Genetics , vol.25 , Issue.8 , pp. 335-343
    • Segal, E.1    Widom, J.2
  • 7
    • 68149120313 scopus 로고    scopus 로고
    • Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II
    • Hodges C, Bintu L, Lubkowska L, et al. Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II . Science, 2009, 325(5940): 626-628
    • (2009) Science , vol.325 , Issue.5940 , pp. 626-628
    • Hodges, C.1    Bintu, L.2    Lubkowska, L.3
  • 8
    • 69949124307 scopus 로고    scopus 로고
    • Nucleosome positioning as a determinant of exon recognition
    • Tilgner H, Nikolaou C, Althammer S, et al. Nucleosome positioning as a determinant of exon recognition. Nat Struc Mol Biol, 2009, 16(9): 996-1002
    • (2009) Nat Struc Mol Biol , vol.16 , Issue.9 , pp. 996-1002
    • Tilgner, H.1    Nikolaou, C.2    Althammer, S.3
  • 9
    • 69949132191 scopus 로고    scopus 로고
    • Chromatin organization marks exon-intron structure
    • Schwartz S, Meshorer E, Ast G. Chromatin organization marks exon-intron structure. Nat Struc Mol Biol, 2009, 16(9): 990-995
    • (2009) Nat Struc Mol Biol , vol.16 , Issue.9 , pp. 990-995
    • Schwartz, S.1    Meshorer, E.2    Ast, G.3
  • 10
    • 38649094557 scopus 로고    scopus 로고
    • Epigenetic regulation and the variability of gene expression
    • DOI 10.1038/ng.2007.58, PII NG200758
    • Choi J K, Kim Y J. Epigenetic regulation and the variability of gene expression. Nat Gene, 2008, 40(2): 141-147 (Pubitemid 351171392)
    • (2008) Nature Genetics , vol.40 , Issue.2 , pp. 141-147
    • Choi, J.K.1    Kim, Y.-J.2
  • 11
    • 63449105244 scopus 로고    scopus 로고
    • Intrinsic variability of gene expression encoded in nucleosome positioning sequences
    • Choi J K, Kim Y J. Intrinsic variability of gene expression encoded in nucleosome positioning sequences. Nat Gene, 2009, 41(4): 498-503
    • (2009) Nat Gene , vol.41 , Issue.4 , pp. 498-503
    • Choi, J.K.1    Kim, Y.J.2
  • 12
    • 0040116022 scopus 로고    scopus 로고
    • A nucleosome positioned in the distal promoter region activates transcription of the human U6 gene
    • Stunkel W, Kober I, Seifart K H. A nucleosome positioned in the distal promoter region activates transcription of the human U6 gene. Mol Cell Biol, 1997, 17(8): 4397-4405 (Pubitemid 27318117)
    • (1997) Molecular and Cellular Biology , vol.17 , Issue.8 , pp. 4397-4405
    • Stunkel, W.1    Kober, I.2    Seifart, K.H.3
  • 13
    • 3543023310 scopus 로고    scopus 로고
    • Evidence for nucleosome depletion at active regulatory regions genome-wide
    • DOI 10.1038/ng1400
    • Lee C K, Shibata Y, Rao B, et al. Evidence for nucleosome depletion at active regulatory regions genome- wide. Nature Genetics, 2004, 36(8): 900-905 (Pubitemid 39014111)
    • (2004) Nature Genetics , vol.36 , Issue.8 , pp. 900-905
    • Lee, C.-K.1    Shibata, Y.2    Rao, B.3    Strahl, B.D.4    Lieb, J.D.5
  • 14
    • 20444403749 scopus 로고    scopus 로고
    • Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast
    • DOI 10.1016/j.molcel.2005.05.003, PII S1097276505013092
    • Sekinger E A, Moqtaderi Z, Struhl K. Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast. Mol Cell, 2005, 18(6): 735-748 (Pubitemid 40804808)
    • (2005) Molecular Cell , vol.18 , Issue.6 , pp. 735-748
    • Sekinger, E.A.1    Moqtaderi, Z.2    Struhl, K.3
  • 15
  • 18
    • 57149119464 scopus 로고    scopus 로고
    • Distinct modes of regulation by chromatin encoded through nucleosome positioning signals
    • Field Y, Kaplan N, Fondufe-Mittendorf Y, et al. Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Compu Biol, 2008, 4(11): el000216
    • (2008) PLoS Compu Biol , vol.4 , Issue.11
    • Field, Y.1    Kaplan, N.2    Fondufe-Mittendorf, Y.3
  • 19
    • 62649085538 scopus 로고    scopus 로고
    • The DNAencoded nucleosome organization of a eukaryotic genome
    • Kaplan N, Moore I K, Fondufe-Mittendorf Y, et al. The DNAencoded nucleosome organization of a eukaryotic genome. Nature, 2009, 458(7236): 362-366
    • (2009) Nature , vol.458 , Issue.7236 , pp. 362-366
    • Kaplan, N.1    Moore, I.K.2    Fondufe-Mittendorf, Y.3
  • 20
    • 52949092297 scopus 로고    scopus 로고
    • Preferentially quantized linker DNA lengths in Saccharomyces cerevisiae
    • Wang J P, Fondufe-Mittendorf Y, Xi L, et al. Preferentially quantized linker DNA lengths in Saccharomyces cerevisiae. PLoS Comput Biol, 2008, 4(9): el000175
    • (2008) PLoS Comput Biol , vol.4 , Issue.9
    • Wang, J.P.1    Fondufe-Mittendorf, Y.2    Xi, L.3
  • 21
    • 0023777538 scopus 로고
    • Statistical distributions of nucleosomes: Nonrandom locations by a stochastic mechanism
    • Kornberg R D, Stryer L. Statistical distributions of nucleosomes: Nonrandom locations by a stochastic mechanism. Nucl Acid Res, 1988, 16(14A): 6677-6690
    • (1988) Nucl Acid Res , vol.16 , Issue.14 , pp. 6677-6690
    • Kornberg, R.D.1    Stryer, L.2
  • 22
    • 22744432660 scopus 로고    scopus 로고
    • Molecular biology: Genome-scale identification of nucleosome positions in S. cerevisiae
    • DOI 10.1126/science.1112178
    • Yuan G C, Liu Y J, Dion M F, et al. Genome-scale identification of nucleosome positions in S. cerevisiae. Science, 2005, 309(5734): 626-630 (Pubitemid 41033649)
    • (2005) Science , vol.309 , Issue.5734 , pp. 626-630
    • Yuan, G.-C.1    Liu, Y.-J.2    Dion, M.F.3    Slack, M.D.4    Wu, L.F.5    Altschuler, S.J.6    Rando, O.J.7
  • 25
    • 48249153426 scopus 로고    scopus 로고
    • The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome
    • Fu Y, Sinha M, Peterson C L, et al. The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. PLoS Genet, 2008, 4(7): el000138
    • (2008) PLoS Genet , vol.4 , Issue.7
    • Fu, Y.1    Sinha, M.2    Peterson, C.L.3
  • 26
    • 39749145198 scopus 로고    scopus 로고
    • Dynamic regulation of nucleosome positioning in the human genome
    • DOI 10.1016/j.cell.2008.02.022, PII S0092867408002705
    • Schones D E, Cui K, Cuddapah S, et al. Dynamic regulation of nucleosome positioning in the human genome. Cell, 2008, 132(5): 887-898 (Pubitemid 351312809)
    • (2008) Cell , vol.132 , Issue.5 , pp. 887-898
    • Schones, D.E.1    Cui, K.2    Cuddapah, S.3    Roh, T.-Y.4    Barski, A.5    Wang, Z.6    Wei, G.7    Zhao, K.8
  • 27
    • 68249142923 scopus 로고    scopus 로고
    • Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
    • Zhang Y, Moqtaderi Z, Rattner B P, et al. Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Nat Struct Mol Biol, 2009, 16(8): 847-852
    • (2009) Nat Struct Mol Biol , vol.16 , Issue.8 , pp. 847-852
    • Zhang, Y.1    Moqtaderi, Z.2    Rattner, B.P.3
  • 28
    • 77950361329 scopus 로고    scopus 로고
    • Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences?
    • Stein A, Takasuka T E, Collings C K. Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences?. Nucl Acid Res, 2009, 38(3): 709-719
    • (2009) Nucl Acid Res , vol.38 , Issue.3 , pp. 709-719
    • Stein, A.1    Takasuka, T.E.2    Collings, C.K.3
  • 29
    • 75249093873 scopus 로고    scopus 로고
    • Ceres: Software for the integrated analysis of transcription factor binding sites and nucleosome positions in Saccharomyces cerevisiae
    • Morris R T, O' Connor T R, Wyrick J J. Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in Saccharomyces cerevisiae. Bioinformatics, 2010, 26(2): 168-174
    • (2010) Bioinformatics , vol.26 , Issue.2 , pp. 168-174
    • Morris, R.T.1    O'Connor, T.R.2    Wyrick, J.J.3
  • 30
    • 77958569804 scopus 로고    scopus 로고
    • Prediction of nucleosome positioning based on transcription factor binding sites
    • Yi X, Cai Y D, He Z, et al. Prediction of nucleosome positioning based on transcription factor binding sites. PloS One, 2010, 5(9): el2495
    • (2010) PloS One , vol.5 , Issue.9
    • Yi, X.1    Cai, Y.D.2    He, Z.3
  • 31
    • 45449093785 scopus 로고    scopus 로고
    • NuScore: A web-interface for nucleosome positioning predictions
    • DOI 10.1093/bioinformatics/btn212
    • Tolstorukov M Y, Choudhary V, Olson W K, et al. NuScore: A web- interface for nucleosome positioning predictions. Bioinformatics, 2008, 24(12): 1456-1458 (Pubitemid 351851000)
    • (2008) Bioinformatics , vol.24 , Issue.12 , pp. 1456-1458
    • Tolstorukov, M.Y.1    Choudhary, V.2    Olson, W.K.3    Zhurkin, V.B.4    Park, P.J.5
  • 33
    • 78649938432 scopus 로고    scopus 로고
    • Prediction of nucleosome DNA formation potential and nucleosome positioning using increment of diversity combined with quadratic discriminant analysis
    • Zhao X, Pei Z, Liu J, et al. Prediction of nucleosome DNA formation potential and nucleosome positioning using increment of diversity combined with quadratic discriminant analysis. Chrom Res, 2010, 18(7): 777-785
    • (2010) Chrom Res , vol.18 , Issue.7 , pp. 777-785
    • Zhao, X.1    Pei, Z.2    Liu, J.3
  • 34
    • 79251560341 scopus 로고    scopus 로고
    • Analysis of nucleosome positioning determined by DNA helix curvature in the human genome
    • Liu H, Duan X, Yu S, et al. Analysis of nucleosome positioning determined by DNA helix curvature in the human genome. BMC Genomics, 2011, 12: 72
    • (2011) BMC Genomics , vol.12 , pp. 72
    • Liu, H.1    Duan, X.2    Yu, S.3
  • 35
    • 0036306349 scopus 로고    scopus 로고
    • Bending and flexibility of methylated and unmethylated EcoRI DNA
    • DOI 10.1006/jmbi.2001.5247
    • Nathan D, Crothers D M. Bending and flexibility of methylated and unmethylated EcoRI DNA. J Mol Biol, 2002, 316(1): 7-17 (Pubitemid 34729262)
    • (2002) Journal of Molecular Biology , vol.316 , Issue.1 , pp. 7-17
    • Nathan, D.1    Crothers, D.M.2
  • 36
    • 34247181137 scopus 로고    scopus 로고
    • The core histone tail domains contribute to sequence-dependent nucleosome positioning
    • DOI 10.1074/jbc.M610584200
    • Yang Z, Zheng C, Hayes J J. The core histone tail domains contribute to sequence-dependent nucleosome positioning. J Biol Chem, 2007, 282(11): 7930-7938 (Pubitemid 47093543)
    • (2007) Journal of Biological Chemistry , vol.282 , Issue.11 , pp. 7930-7938
    • Yang, Z.1    Zheng, C.2    Hayes, J.J.3
  • 37
    • 38949204996 scopus 로고    scopus 로고
    • Genomic sequence is highly predictive of local nucleosome depletion
    • Yuan G C, Liu J S. Genomic sequence is highly predictive of local nucleosome depletion. PLoS Compu Biol, 2008, 4(1): el3
    • (2008) PLoS Compu Biol , vol.4 , Issue.1
    • Yuan, G.C.1    Liu, J.S.2
  • 38
    • 46449103738 scopus 로고    scopus 로고
    • A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
    • Valouev A, Ichikawa J, Tonthat T, et al. A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Res, 2008, 18(7): 1051 -1063
    • (2008) Genome Res , vol.18 , Issue.7 , pp. 1051-1063
    • Valouev, A.1    Ichikawa, J.2    Tonthat, T.3
  • 39
    • 78049440475 scopus 로고    scopus 로고
    • Chromatin landscape dictates HSF binding to target DNA elements
    • Guertin M J, Lis J T. Chromatin landscape dictates HSF binding to target DNA elements. PLoS Gen, 2010, 6(9), pii: el001114
    • (2010) PLoS Gen , vol.6 , Issue.9
    • Guertin, M.J.1    Lis, J.T.2
  • 40
    • 79958777000 scopus 로고    scopus 로고
    • The nucleosome map of the mammalian liver
    • Li Z, Schug J, Tuteja G, et al. The nucleosome map of the mammalian liver. Nat Struct Mol Biol, 2011, 18(6): 742-746
    • (2011) Nat Struct Mol Biol , vol.18 , Issue.6 , pp. 742-746
    • Li, Z.1    Schug, J.2    Tuteja, G.3
  • 41
    • 78649264722 scopus 로고    scopus 로고
    • P53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy
    • Lidor Nili E, Field Y, Lubling Y, et al. p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy. Genome Res, 2010, 20(10): 1361-1368
    • (2010) Genome Res , vol.20 , Issue.10 , pp. 1361-1368
    • Lidor Nili, E.1    Field, Y.2    Lubling, Y.3
  • 42
    • 79959557189 scopus 로고    scopus 로고
    • Determinants of nucleosome organization in primary human cells
    • Valouev A, Johnson S M, Boyd S D, et al. Determinants of nucleosome organization in primary human cells. Nature, 2011, 474(7352): 516-520
    • (2011) Nature , vol.474 , Issue.7352 , pp. 516-520
    • Valouev, A.1    Johnson, S.M.2    Boyd, S.D.3
  • 43
    • 65849514422 scopus 로고    scopus 로고
    • Nucleosome eviction from MHC class D promoters controls positioning of the transcription start site
    • Leimgruber E, Seguin-Estevez Q, Dunand-Sauthier I, et al. Nucleosome eviction from MHC class D promoters controls positioning of the transcription start site. Nucl Acid Res, 2009, 37(8): 2514-2528
    • (2009) Nucl Acid Res , vol.37 , Issue.8 , pp. 2514-2528
    • Leimgruber, E.1    Seguin-Estevez, Q.2    Dunand-Sauthier, I.3
  • 44
    • 67649848278 scopus 로고    scopus 로고
    • Relating periodicity of nucleosome organization and gene regulation
    • Wan J, Lin J, Zack D J, et al. Relating periodicity of nucleosome organization and gene regulation. Bioinformatics, 2009, 25 (14): 1782-1788
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1782-1788
    • Wan, J.1    Lin, J.2    Zack, D.J.3
  • 45
    • 79851485916 scopus 로고    scopus 로고
    • Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level
    • Rach E A, Winter D R, Ashlee M. Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level. PLoS Genetics, 2011, 7(1): el001274
    • (2011) PLoS Genetics , vol.7 , Issue.1
    • Rach, E.A.1    Winter, D.R.2    Ashlee, M.3
  • 46
    • 69949132193 scopus 로고    scopus 로고
    • Dynamics and function of compact nucleosome arrays
    • Poirier M G, Oh E, Tims H S, et al. Dynamics and function of compact nucleosome arrays. Nat Struc Mol Biol, 2009, 16 (9): 938-944
    • (2009) Nat Struc Mol Biol , vol.16 , Issue.9 , pp. 938-944
    • Poirier, M.G.1    Oh, E.2    Tims, H.S.3
  • 47
    • 68049083831 scopus 로고    scopus 로고
    • Incorporating nucleosomes into thermodynamic models of transcription regulation
    • Raveh-Sadka T, Levo M, Segal E. Incorporating nucleosomes into thermodynamic models of transcription regulation. Genome Res, 2009, 19(8): 1480-1496
    • (2009) Genome Res , vol.19 , Issue.8 , pp. 1480-1496
    • Raveh-Sadka, T.1    Levo, M.2    Segal, E.3
  • 48
    • 77958537326 scopus 로고    scopus 로고
    • Weakly positioned nucleosomes enhance the transcriptional competency of chromatin
    • Belch Y, Yang J, Liu Y, et al. Weakly positioned nucleosomes enhance the transcriptional competency of chromatin. PLoS ONE, 2010, 5(9): el2984
    • (2010) PLoS ONE , vol.5 , Issue.9
    • Belch, Y.1    Yang, J.2    Liu, Y.3
  • 49
    • 78149237772 scopus 로고    scopus 로고
    • Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation
    • Fan X, Moqtaderi Z, Jin Y, et al. Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation. Proc Natl Acad Sci USA, 2010, 107(42): 17945-17950
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.42 , pp. 17945-17950
    • Fan, X.1    Moqtaderi, Z.2    Jin, Y.3
  • 50
    • 43749088127 scopus 로고    scopus 로고
    • Two strategies for gene regulation by promoter nucleosomes
    • DOI 10.1101/gr.076059.108
    • Tirosh I, Barkai, N. Two strategies for gene regulation by promoter nucleosomes. Genome Res, 2008, 18(7): 1084-1091 (Pubitemid 351931159)
    • (2008) Genome Research , vol.18 , Issue.7 , pp. 1084-1091
    • Tirosh, I.1    Barkai, N.2
  • 51
    • 38349018723 scopus 로고    scopus 로고
    • On the relation between promoter divergence and gene expression evolution
    • Tirosh I, Weinberger A, Bezalel D, et al. On the relation between promoter divergence and gene expression evolution. Mol Sys Biol, 2008, 4: 159
    • (2008) Mol Sys Biol , vol.4 , pp. 159
    • Tirosh, I.1    Weinberger, A.2    Bezalel, D.3
  • 52
    • 65549086559 scopus 로고    scopus 로고
    • A yeast hybrid provides insight into the evolution of gene expression regulation
    • Tirosh I, Reikhav S, Levy A A, et al. A yeast hybrid provides insight into the evolution of gene expression regulation. Science, 2009, 324(5927): 659-662
    • (2009) Science , vol.324 , Issue.5927 , pp. 659-662
    • Tirosh, I.1    Reikhav, S.2    Levy, A.A.3
  • 53
    • 74949084972 scopus 로고    scopus 로고
    • A novel strategy of transcription regulation by intragenic nucleosome ordering
    • Vaillant C, Palmeira L, Chevereau G, et al. A novel strategy of transcription regulation by intragenic nucleosome ordering. Genome Res, 2010, 20(1): 59-67
    • (2010) Genome Res , vol.20 , Issue.1 , pp. 59-67
    • Vaillant, C.1    Palmeira, L.2    Chevereau, G.3
  • 54
    • 77950262538 scopus 로고    scopus 로고
    • Nucleosome dynamics define transcriptional enhancers
    • He H H, Meyer C A, Shin H, et al. Nucleosome dynamics define transcriptional enhancers. Nature Genetics, 2010, 42(4): 343-348
    • (2010) Nature Genetics , vol.42 , Issue.4 , pp. 343-348
    • He, H.H.1    Meyer, C.A.2    Shin, H.3
  • 55
    • 79960126724 scopus 로고    scopus 로고
    • Dynamic nucleosome positioning around functional transcription factor binding sites in the promoters of inducible NF-kappaB target genes
    • Nie Y, Sun X. Dynamic nucleosome positioning around functional transcription factor binding sites in the promoters of inducible NF-kappaB target genes. Bioinformatics and Biomedical Engineering(iCBBE), 2011: 1-3
    • (2011) Bioinformatics and Biomedical Engineering(iCBBE) , pp. 1-3
    • Nie, Y.1    Sun, X.2
  • 57
    • 77951120000 scopus 로고    scopus 로고
    • Alternative splicing and evolution: Diversification, exon definition and function
    • Keren H, Lev-Maor G, Ast G. Alternative splicing and evolution: Diversification, exon definition and function. Nat Rev Genetics, 2010, 11(5): 345-55
    • (2010) Nat Rev Genetics , vol.11 , Issue.5 , pp. 345-355
    • Keren, H.1    Lev-Maor, G.2    Ast, G.3
  • 58
    • 70349333201 scopus 로고    scopus 로고
    • Nucleosomes are well positioned in exons and carry characteristic histone modifications
    • Andersson R, Enroth S, Rada-Iglesias A, et al. Nucleosomes are well positioned in exons and carry characteristic histone modifications. Genome Res, 2009, 19(10): 1732-1741
    • (2009) Genome Res , vol.19 , Issue.10 , pp. 1732-1741
    • Andersson, R.1    Enroth, S.2    Rada-Iglesias, A.3
  • 59
    • 61349098460 scopus 로고    scopus 로고
    • Differential chromatin marking of introns and expressed exons by H3K36me3
    • Kolasinska-Zwierz P, Down T, Latorre I, et al. Differential chromatin marking of introns and expressed exons by H3K36me3. Nat Gen, 2009, 41(3): 376-381
    • (2009) Nat Gen , vol.41 , Issue.3 , pp. 376-381
    • Kolasinska-Zwierz, P.1    Down, T.2    Latorre, I.3
  • 60
    • 77954659099 scopus 로고    scopus 로고
    • Relationship between nucleosome positioning and DNA methylation
    • Chodavarapu R K, Feng S, Bernatavichute Y V, et al. Relationship between nucleosome positioning and DNA methylation. Nature, 2010, 466(7304): 388-392
    • (2010) Nature , vol.466 , Issue.7304 , pp. 388-392
    • Chodavarapu, R.K.1    Feng, S.2    Bernatavichute, Y.V.3
  • 61
    • 77149175671 scopus 로고    scopus 로고
    • Regulation of alternative splicing by histone modifications
    • Luco R F, Pan Q, Tominaga K, et al. Regulation of alternative splicing by histone modifications. Science, 2010, 327(5968): 996-1000
    • (2010) Science , vol.327 , Issue.5968 , pp. 996-1000
    • Luco, R.F.1    Pan, Q.2    Tominaga, K.3
  • 62
    • 77957878986 scopus 로고    scopus 로고
    • Complex exon-intron marking by histone modifications is not determined solely by nucleosome distribution
    • Dhami P, Saffrey P, Bruce A W, et al. Complex exon-intron marking by histone modifications is not determined solely by nucleosome distribution. PLoS ONE, 2010, 5(8): e12339
    • (2010) PLoS ONE , vol.5 , Issue.8
    • Dhami, P.1    Saffrey, P.2    Bruce, A.W.3
  • 63
    • 70449879427 scopus 로고    scopus 로고
    • Revealing the hidden relationship between nucleosomes and splicing
    • Kaplan C D. Revealing the hidden relationship between nucleosomes and splicing. Cell Cycle, 2009, 8(22): 3633-3634
    • (2009) Cell Cycle , vol.8 , Issue.22 , pp. 3633-3634
    • Kaplan, C.D.1
  • 64
    • 70249121045 scopus 로고    scopus 로고
    • The logic of chromatin architecture and remodelling at promoters
    • Cairns B R. The logic of chromatin architecture and remodelling at promoters. Nature, 2009, 461(7261): 193-819
    • (2009) Nature , vol.461 , Issue.7261 , pp. 193-819
    • Cairns, B.R.1
  • 65
    • 57149100569 scopus 로고    scopus 로고
    • The impact of the nucleosome code on protein-coding sequence evolution in yeast
    • Warnecke T, Batada N N, Hurst L D. The impact of the nucleosome code on protein-coding sequence evolution in yeast. PLoS Genetics, 2008, 4(11): e1000250
    • (2008) PLoS Genetics , vol.4 , Issue.11
    • Warnecke, T.1    Batada, N.N.2    Hurst, L.D.3
  • 66
    • 56649089682 scopus 로고    scopus 로고
    • Evolutionary footprints of nucleosome positions in yeast
    • Washietl S, Machne R, Goldman N. Evolutionary footprints of nucleosome positions in yeast. Trends Genetics, 2008, 24 (12): 583-587
    • (2008) Trends Genetics , vol.24 , Issue.12 , pp. 583-587
    • Washietl, S.1    Machne, R.2    Goldman, N.3
  • 67
    • 79956309239 scopus 로고    scopus 로고
    • Implications of the nucleosome code in regulatory variation, adaptation and evolution
    • Choi J K, Kim Y J. Implications of the nucleosome code in regulatory variation, adaptation and evolution. Epigenetics, 2009, 4(5): 291-295
    • (2009) Epigenetics , vol.4 , Issue.5 , pp. 291-295
    • Choi, J.K.1    Kim, Y.J.2
  • 68
    • 77955541591 scopus 로고    scopus 로고
    • Analysis of nucleosome positioning in promoters of miRNA genes and protein-coding genes
    • Liu H D, Zhang D J, Xie J M, et al. Analysis of nucleosome positioning in promoters of miRNA genes and protein-coding genes. Chin Sci Bull, 2010, 55(22): 2347-2352
    • (2010) Chin Sci Bull , vol.55 , Issue.22 , pp. 2347-2352
    • Liu, H.D.1    Zhang, D.J.2    Xie, J.M.3
  • 69
    • 76749107562 scopus 로고    scopus 로고
    • Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local
    • Goh W S, Orlov Y, Li J, et al. Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local. PLoS Compu Biol, 2010, 6(1): e1000649
    • (2010) PLoS Compu Biol , vol.6 , Issue.1
    • Goh, W.S.1    Orlov, Y.2    Li, J.3
  • 70
    • 33749406106 scopus 로고    scopus 로고
    • Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters
    • Hogan G J, Lee C K, Lieb J D. Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters. PLoS Genetics, 2006, 2(9):el58
    • (2006) PLoS Genetics , vol.2 , Issue.9
    • Hogan, G.J.1    Lee, C.K.2    Lieb, J.D.3
  • 71
    • 57449095143 scopus 로고    scopus 로고
    • Identifying positioned nucleosomes with epigenetic marks in human from ChlP-Seq
    • Zhang Y, Shin H, Song J S, et al. Identifying positioned nucleosomes with epigenetic marks in human from ChlP-Seq. BMC Genomics, 2008, 9: 537
    • (2008) BMC Genomics , vol.9 , pp. 537
    • Zhang, Y.1    Shin, H.2    Song, J.S.3
  • 73
    • 37249012276 scopus 로고    scopus 로고
    • Nucleosome destabilization in the epigenetic regulation of gene expression
    • DOI 10.1038/nrg2206, PII NRG2206
    • Henikoff S. Nucleosome destabilization in the epigenetic regulation of gene expression. Nat Rev Gen, 2008, 9(1): 15-26 (Pubitemid 350277297)
    • (2008) Nature Reviews Genetics , vol.9 , Issue.1 , pp. 15-26
    • Henikoff, S.1
  • 74
    • 79952113300 scopus 로고    scopus 로고
    • Nucleosome dynamics and epigenetic stability
    • Korber P, Becker P B. Nucleosome dynamics and epigenetic stability. Essays Biochem, 2010, 48(1): 63-74
    • (2010) Essays Biochem , vol.48 , Issue.1 , pp. 63-74
    • Korber, P.1    Becker, P.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.