Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local

PLoS Computational Biology

Volumn 6, Issue 1, 2010, Pages

  Goh, Wee Siong ^a   Orlov, Yuriy ^a   Li, Jingmei ^a   Clarke, Neil D ^a  

^a GENOME INSTITUTE OF SINGAPORE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GENE ENCODING; POLYMERASE CHAIN REACTION; SITE SELECTION; TRANSCRIPTION; TRANSCRIPTION FACTORS;

CHIP-CHIP; CROSSLINKED; GENOMIC DNA; HIGH RESOLUTION DATA; IMMUNOPRECIPITATIONS; IN-VITRO; IN-VIVO; NUCLEOSOMES; TRANSCRIPTION FACTOR BINDING; TRANSCRIPTION FACTOR BINDING SITES;

BINDING SITES;

GENOMIC DNA; TRANSCRIPTION FACTOR; DNA;

ARTICLE; BINDING SITE; CHROMATIN; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; DNA BINDING; GENE SEQUENCE; IN VITRO STUDY; IN VIVO STUDY; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOSOME; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PROTEIN BINDING; AREA UNDER THE CURVE; BIOLOGICAL MODEL; BIOLOGY; CLUSTER ANALYSIS; COMPUTER SIMULATION; METABOLISM; METHODOLOGY; PROTEIN DATABASE; PROTEIN DOMAIN; RECEIVER OPERATING CHARACTERISTIC; SACCHAROMYCES;

AREA UNDER CURVE; BINDING SITES; CHROMATIN; CHROMATIN IMMUNOPRECIPITATION; CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; COMPUTER SIMULATION; DATABASES, PROTEIN; DNA; MODELS, GENETIC; NUCLEOSOMES; POLYMERASE CHAIN REACTION; PROTEIN INTERACTION DOMAINS AND MOTIFS; ROC CURVE; SACCHAROMYCES; TRANSCRIPTION FACTORS;

EID: 76749107562     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1000649     Document Type: Article

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