메뉴 건너뛰기




Volumn 22, Issue 6, 2012, Pages 423-427

A structure-activity relationship study for 2′-deoxyadenosine analogs at a9 position in the catalytic core of 10-23 DNAzyme for rate enhancement

Author keywords

[No Author keywords available]

Indexed keywords

8 AZA 7 DEAZA 2' DEOXYADENOSINE; DEOXYADENOSINE DERIVATIVE; DNA; DNAZYME; HYDROXYL GROUP; UNCLASSIFIED DRUG;

EID: 84870539726     PISSN: 21593337     EISSN: None     Source Type: Journal    
DOI: 10.1089/nat.2012.0365     Document Type: Article
Times cited : (14)

References (32)
  • 3
    • 35348911812 scopus 로고    scopus 로고
    • Brothers in arms: DNA enzymes, short interfering RNA, and the emerging wave of small-molecule nucleic acid-based gene-silencing strategies
    • DOI 10.2353/ajpath.2007.070120
    • BHINDI, R., FAHMY, R.G., LOWE, H.C., CHESTERMAN, C.N., DASS, C.R., CAIRNS, M.J., SARAVOLAC, E.G., SUN, L.Q., and KHACHIGIAN, L.M. (2007). Brothers in arms DNA enzymes, short interfering RNA, and the emerging wave of small-molecule nucleic acid-based gene-silencing strategies. Am. J. Pathol. 171, 1079-1088. (Pubitemid 47582883)
    • (2007) American Journal of Pathology , vol.171 , Issue.4 , pp. 1079-1088
    • Bhindi, R.1    Fahmy, R.G.2    Lowe, H.C.3    Chesterman, C.N.4    Dass, C.R.5    Cairns, M.J.6    Saravolac, E.G.7    Sun, L.-Q.8    Khachigian, L.M.9
  • 4
    • 65349162752 scopus 로고    scopus 로고
    • DNAzymes and their therapeutic possibilities
    • CHAN, C.W.S., and KHACHIGIAN, L.M. (2009). DNAzymes and their therapeutic possibilities. Inter. Med. J. 39, 249-251.
    • (2009) Inter. Med. J , vol.39 , pp. 249-251
    • Chan, C.W.S.1    Khachigian, L.M.2
  • 5
    • 0346850835 scopus 로고    scopus 로고
    • Structural Rearrangements of the 10-23 DNAzyme to β3 Integrin Subunit mRNA Induced by Cations and Their Relations to the Catalytic Activity
    • DOI 10.1074/jbc.M300504200
    • CIESLAK, M., SZYMANSKI, J., ADAMIAK, R.W., and CIERNIEWSKI, C.S. (2003). Structural rearrangements of the 10-23 DNAzyme to b3 integrin subunit mRNA induced by cations and their relations to the catalytic activity. J. Biol. Chem. 278, 47987-47996. (Pubitemid 37523248)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.48 , pp. 47987-47996
    • Cieslak, M.1    Szymanski, J.2    Adamiak, R.W.3    Cierniewski, C.S.4
  • 6
    • 39749165700 scopus 로고    scopus 로고
    • DNAzyme technology and cancer therapy: Cleave and let die
    • DOI 10.1158/1535-7163.MCT-07-0510
    • DASS, C.R., CHOONG, P.F.M., and KHACHIGIAN, L.M. (2008). DNAzyme technology and cancer therapy: cleave and let die. Mol. Cancer Ther. 7, 243-251. (Pubitemid 351302518)
    • (2008) Molecular Cancer Therapeutics , vol.7 , Issue.2 , pp. 243-251
    • Dass, C.R.1    Choong, P.F.M.2    Khachigian, L.M.3
  • 8
    • 79960984694 scopus 로고    scopus 로고
    • A novel strategy of chemical modification for rate enhancement of 10-23 DNAzyme: A combination of A9 position and 8-aza-7-deaza-2'-deoxyadenosine analogs
    • HE, J.L., ZHANG, D., WANG, Q., WEI, X., CHENG, M.S., and LIU, K.L. (2011). A novel strategy of chemical modification for rate enhancement of 10-23 DNAzyme: a combination of A9 position and 8-aza-7-deaza-2'-deoxyadenosine analogs. Org. Biomol. Chem. 9, 5728-5736.
    • (2011) Org. Biomol. Chem , vol.9 , pp. 5728-5736
    • L, H.E.J.1    Zhang, D.2    Wang, Q.3    Wei, X.4    Cheng, M.S.5    Liu, K.L.6
  • 9
    • 38049039329 scopus 로고    scopus 로고
    • Use of DNAzymes for site-specific analysis of ribonucleotide modifications
    • HENGSBACH, M., MEUSBURGER, M., LYKO, F., and HELM, M. (2008). Use of DNAzymes for site-specific analysis of ribonucleotide modifications. RNA, 14, 180-187.
    • (2008) RNA , vol.14 , pp. 180-187
    • Hengsbach, M.1    Meusburger, M.2    Lyko, F.3    Helm, M.4
  • 10
    • 63249131635 scopus 로고    scopus 로고
    • A self-cleaving DNA enzyme modified with amines guanidines and imidazoles operates independently of divalent metal cations M2 +
    • HOLLENSTEIN, M., HIPOLITO, C.J., LAM, C.H., and PERRIN, D.M. (2009). A self-cleaving DNA enzyme modified with amines, guanidines and imidazoles operates independently of divalent metal cations (M2 +). Nucleic Acids Res. 37, 1638-1649.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1638-1649
    • Hollenstein, M.1    Hipolito, C.J.2    Lam, C.H.3    Perrin, D.M.4
  • 11
    • 77955659487 scopus 로고    scopus 로고
    • Introduction of guanidinium-modified deoxyuridine into the substrate binding regions of DNAzyme 10-23 to enhance target affinity: Implications for DNAzyme design
    • LAM, C.H., and PERRIN, D.M. (2010). Introduction of guanidinium-modified deoxyuridine into the substrate binding regions of DNAzyme 10-23 to enhance target affinity: implications for DNAzyme design. Bioorg. Med. Chem. Lett. 20, 5119-5122.
    • (2010) Bioorg. Med. Chem. Lett , vol.20 , pp. 5119-5122
    • Lam, C.H.1    Perrin, D.M.2
  • 12
    • 67349198163 scopus 로고    scopus 로고
    • Direct measurement of the ionization state of an essential guanine in the hairpin ribozyme
    • LIU, L., COTTRELL, J.W., SCOTT, L.G., and FEDOR, M.J. (2009). Direct measurement of the ionization state of an essential guanine in the hairpin ribozyme. Nat. Chem. Biol. 5, 351-357.
    • (2009) Nat. Chem. Biol , vol.5 , pp. 351-357
    • Liu, L.1    Cottrell, J.W.2    Scott, L.G.3    Fedor, M.J.4
  • 13
    • 52949151200 scopus 로고    scopus 로고
    • Effect of RP and SP phosphorothioate substitution at the scissile site on the cleavage activity of deoxyribozyme 10-23
    • NAWROT, B., WIDERA, K., SOBCZAK, M., WOJCIK, M., and STEC, W.J. (2008). Effect of RP and SP phosphorothioate substitution at the scissile site on the cleavage activity of deoxyribozyme 10-23. Curr. Org. Chem. 12, 1004-1009.
    • (2008) Curr. Org. Chem̀ , vol.12 , pp. 1004-1009
    • Nawrot, B.1    Widera, K.2    Sobczak, M.3    Wojcik, M.4    Stec, W.J.5
  • 14
    • 33846811414 scopus 로고    scopus 로고
    • Mapping of the functional phosphate groups in the catalytic core of deoxyribozyme 10-23
    • DOI 10.1111/j.1742-4658.2007.05655.x
    • NAWROT, B., WIDERA, K., WOJCIK, M., REBOWSKA, B., NOWAK, G., and STEC, W.J. (2007). Mapping of the functional phosphate groups in the catalytic core of deoxyribozyme 10-23. FEBS J. 274, 1062-1072. (Pubitemid 46204424)
    • (2007) FEBS Journal , vol.274 , Issue.4 , pp. 1062-1072
    • Nawrot, B.1    Widera, K.2    Wojcik, M.3    Rebowska, B.4    Nowak, G.5    Stec, W.J.6
  • 15
    • 0037465559 scopus 로고    scopus 로고
    • 2+-dependent deoxyribozyme in relation to its RNA cleavage function
    • DOI 10.1021/bi020364z
    • OKUMOTO, Y., TANABE, Y., and SUGIMOTO, N. (2003). Factors that contribute to efficient catalytic activity of a small Ca2 +-dependent deoxyribozyme in relation to its RNA cleavage function. Biochemistry 42, 2158-2165. (Pubitemid 36258690)
    • (2003) Biochemistry , vol.42 , Issue.7 , pp. 2158-2165
    • Okumoto, Y.1    Tanabe, Y.2    Sugimoto, N.3
  • 16
    • 0037133526 scopus 로고    scopus 로고
    • a perturbation in genomic Hepatitis Delta Virus ribozyme catalysis evidenced by nucleotide analogue interference mapping
    • DOI 10.1021/bi011816v
    • OYELERE, A.K., KARDON, J.R., and STROBEL, S.A. (2002). pKa perturbation in genomic hepatitis Delta Virus ribozyme catalysis evidenced by nucleotide analogue interference mapping. Biochemistry 41, 3667-3675. (Pubitemid 34224679)
    • (2002) Biochemistry , vol.41 , Issue.11 , pp. 3667-3675
    • Oyelere, A.K.1    Kardon, J.R.2    Strobel, S.A.3
  • 17
    • 77955419129 scopus 로고    scopus 로고
    • 10-23 DNAzyme modified with (2¢R)-and (2¢S)-2¢-deoxy- 2¢-C-methyluridine in the catalytic core
    • ROBALDO, L., MONTSERRAT, J.M., and IRIBARREN, A.M. (2010). 10-23 DNAzyme modified with (2¢R)-and (2¢S)-2¢-deoxy-2¢-C-methyluridine in the catalytic core. Bioorg. Med. Chem. Lett. 20, 4367-4370.
    • (2010) Bioorg. Med. Chem. Lett , vol.20 , pp. 4367-4370
    • Robaldo, L.1    Montserrat, J.M.2    Iribarren, A.M.3
  • 19
    • 0032558463 scopus 로고    scopus 로고
    • Mechanism and utility of an RNA-cleaving DNA enzyme
    • DOI 10.1021/bi9812221
    • SANTORO, S.W., and JOYCE,G.F. (1998).Mechanismand utility of an RNA-cleaving DNA enzyme. Biochemistry 37, 13330-13342. (Pubitemid 28449578)
    • (1998) Biochemistry , vol.37 , Issue.38 , pp. 13330-13342
    • Santoro, S.W.1    Joyce, G.F.2
  • 22
    • 0032720771 scopus 로고    scopus 로고
    • Oligonucleotides containing 7-deazaadenines: The influence of the 7-substituent chain length and charge on the duplex stability
    • SEELA, F., and ZULAUF, M. (1999). Oligonucleotides containing 7-deazaadenines: the influence of the 7-substituent chain length and charge on the duplex stability. Helv. Chim. Acta 82, 1878-1898.
    • (1999) Helv. Chim. Acta , vol.82 , pp. 1878-1898
    • Seela, F.1    Zulauf, M.2
  • 23
    • 77952561689 scopus 로고    scopus 로고
    • RNA-cleaving 10-23 deoxyribozyme with a single amino acid-like functionality operates without metal ion cofactors
    • SMUGA, D., MAJCHRZAK, K., SOCHACKA, E., and NAWROT, B. (2010). RNA-cleaving 10-23 deoxyribozyme with a single amino acid-like functionality operates without metal ion cofactors. New J. Chem., 34, 934-948.
    • (2010) New J. Chem , vol.34 , pp. 934-948
    • Smuga, D.1    Majchrzak, K.2    Sochacka, E.3    Nawrot, B.4
  • 24
    • 25444472329 scopus 로고    scopus 로고
    • Use of deoxyribozymes for gene knockdown
    • SUN, L.Q. (2005). Use of deoxyribozymes for gene knockdown. Med. Chem. Rev. 2, 81-87.
    • (2005) Med. Chem. Rev , vol.2 , pp. 81-87
    • Sun, L.Q.1
  • 25
    • 67849104696 scopus 로고    scopus 로고
    • Investigation of the catalytic mechanism of a synthetic DNAzyme with protein-like functionality: An RNaseA mimic?
    • THOMAS, J.M., YOON, J.K., and PERRIN, D.M. (2009). Investigation of the catalytic mechanism of a synthetic DNAzyme with protein-like functionality: an RNaseA mimic? J. Am. Chem. Soc. 131, 5648-5658.
    • (2009) J. Am. Chem. Soc , vol.131 , pp. 5648-5658
    • Thomas, J.M.1    Yoon, J.K.2    Perrin, D.M.3
  • 27
    • 77956133904 scopus 로고    scopus 로고
    • Probing the function of nucleotides in the catalytic cores of the 8-17 and 10-23 DNAzymes by abasic nucleotide and C3 spacer substitutions
    • WANG, B., CAO, L., CHIUMAN, W., LI, Y., and XI, Z. (2010). Probing the function of nucleotides in the catalytic cores of the 8-17 and 10-23 DNAzymes by abasic nucleotide and C3 spacer substitutions. Biochemistry 49, 7553-7562.
    • (2010) Biochemistry , vol.49 , pp. 7553-7562
    • Wang, B.1    Cao, L.2    Chiuman, W.3    Y, L.I.4    Z, X.I.5
  • 29
    • 0037175009 scopus 로고    scopus 로고
    • Sequence requirements in the catalytic core of the "10-23" DNA enzyme
    • DOI 10.1074/jbc.M207094200
    • ZABOROWSKA, Z., FÜ RSTE, J.P., ERDMANN, V.A., and KURRECK, J. (2002). Sequence requirements in the catalytic core of the "10-23" DNA enzyme. J. Biol. Chem. 277, 40617-40622. (Pubitemid 35215642)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.43 , pp. 40617-40622
    • Zaborowska, Z.1    Furste, J.P.2    Erdmann, V.A.3    Kurreck, J.4
  • 30
    • 11844276654 scopus 로고    scopus 로고
    • Deletion analysis in the catalytic region of the 10-23 DNA enzyme
    • DOI 10.1016/j.febslet.2004.12.008, PII S0014579304015339
    • ZABOROWSKA, Z., SCHUBERT, S., KURRECK, J., and ERDMANN, V.A. (2005). Deletion analysis in the catalytic region of the 10-23 DNA enzyme. FEBS Lett. 579, 554-558. (Pubitemid 40092443)
    • (2005) FEBS Letters , vol.579 , Issue.2 , pp. 554-558
    • Zaborowska, Z.1    Schubert, S.2    Kurreck, J.3    Erdmann, V.A.4
  • 31
    • 0036792125 scopus 로고    scopus 로고
    • Angiogenic inhibition mediated by a DNAzyme that targets vascular endothelial growth factor receptor 2
    • ZHANG, L., GASPER, W.J., STASS, S.A., IOFFE, O.B., DAVIS, M.A., and MIXSON, A.J. (2002). Angiogenic inhibition mediated by a DNAzyme that targets vascular endothelial growth factor receptor 2. Cancer Res. 62, 5463-5469.
    • (2002) Cancer Res , vol.62 , pp. 5463-5469
    • Zhang, L.1    Gasper, W.J.2    Stass, S.A.3    Ioffe, O.B.4    Davis, M.A.5    Mixson, A.J.6
  • 32
    • 75149174799 scopus 로고    scopus 로고
    • Hydroxyl-functionalized DNA: An efficient orthogonal protecting strategy and duplex stability
    • ZHANG, D., XU, L., WEI, X., LI, Y.M., HE, J.L., and LIU, K.L. (2009). Hydroxyl-functionalized DNA: an efficient orthogonal protecting strategy and duplex stability. Nucleosides Nucleotides Nucleic Acids 28, 924-942.
    • (2009) Nucleosides Nucleotides Nucleic Acids , vol.28 , pp. 924-942
    • Zhang, D.1    L, X.U.2    Wei, X.3    M, L.I.Y.4    L, H.E.J.5    Liu, K.L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.