-
1
-
-
0028675028
-
A DNA enzyme that cleaves RNA
-
Breaker, R. R. and Joyce, G. F. (1994) A DNA enzyme that cleaves RNA Chem. Biol. 1, 223-229
-
(1994)
Chem. Biol.
, vol.1
, pp. 223-229
-
-
Breaker, R.R.1
Joyce, G.F.2
-
2
-
-
77951731728
-
Deoxyribozymes: Selection design and serendipity in the development of DNA catalysts
-
Silverman, S. K. (2009) Deoxyribozymes: selection design and serendipity in the development of DNA catalysts Acc. Chem. Res. 42, 1521-1531
-
(2009)
Acc. Chem. Res.
, vol.42
, pp. 1521-1531
-
-
Silverman, S.K.1
-
3
-
-
62649161589
-
Biologically inspired synthetic enzymes made from DNA
-
Schlosser, K. and Li, Y. (2009) Biologically inspired synthetic enzymes made from DNA Chem. Biol. 16, 311-322
-
(2009)
Chem. Biol.
, vol.16
, pp. 311-322
-
-
Schlosser, K.1
Li, Y.2
-
4
-
-
0029746712
-
A catalytic DNA for porphyrin metallation
-
Li, Y. and Sen, D. (1996) A catalytic DNA for porphyrin metallation Nat. Struct. Biol. 3, 743-747
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 743-747
-
-
Li, Y.1
Sen, D.2
-
6
-
-
0037420377
-
Deoxyribozymes with 2′-5′ RNA ligase activity
-
Flynn-Charlebois, A., Wang, Y., Prior, T. K., Rashid, I., Hoadley, K. A., Coppins, R. L., Wolf, A. C., and Silverman, S. K. (2003) Deoxyribozymes with 2′-5′ RNA ligase activity J. Am. Chem. Soc. 125, 2444-2454
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 2444-2454
-
-
Flynn-Charlebois, A.1
Wang, Y.2
Prior, T.K.3
Rashid, I.4
Hoadley, K.A.5
Coppins, R.L.6
Wolf, A.C.7
Silverman, S.K.8
-
7
-
-
0347089036
-
A deoxyribozyme that harnesses light to repair thymine dimers in DNA
-
Chinnapen, D. J. and Sen, D. (2004) A deoxyribozyme that harnesses light to repair thymine dimers in DNA Proc. Natl. Acad. Sci. U.S.A. 101, 65-69
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 65-69
-
-
Chinnapen, D.J.1
Sen, D.2
-
8
-
-
41449109957
-
DNA and RNA can be equally efficient catalysts for carbon-carbon bond formation
-
Chandra, M. and Silverman, S. K. (2008) DNA and RNA can be equally efficient catalysts for carbon-carbon bond formation J. Am. Chem. Soc. 130, 2936-2937
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 2936-2937
-
-
Chandra, M.1
Silverman, S.K.2
-
9
-
-
70349327390
-
DNA-catalyzed sequence-specific hydrolysis of DNA
-
Chandra, M., Sachdeva, A., and Silverman, S. K. (2009) DNA-catalyzed sequence-specific hydrolysis of DNA Nat. Chem. Biol. 5, 718-720
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 718-720
-
-
Chandra, M.1
Sachdeva, A.2
Silverman, S.K.3
-
10
-
-
47749107927
-
Deoxyribozymes: Useful DNA catalysts in vitro and in vivo
-
Baum, D. A. and Silverman, S. K. (2008) Deoxyribozymes: useful DNA catalysts in vitro and in vivo Cell. Mol. Life Sci. 65, 2156-2174
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 2156-2174
-
-
Baum, D.A.1
Silverman, S.K.2
-
11
-
-
66249097058
-
Functional nucleic acid sensors
-
Liu, J., Cao, Z., and Lu, Y. (2009) Functional nucleic acid sensors Chem. Rev. 109, 1948-1998
-
(2009)
Chem. Rev.
, vol.109
, pp. 1948-1998
-
-
Liu, J.1
Cao, Z.2
Lu, Y.3
-
12
-
-
28544448500
-
In vitro selection, characterization, and application of deoxyribozymes that cleave RNA
-
Silverman, S. K. (2005) In vitro selection, characterization, and application of deoxyribozymes that cleave RNA Nucleic Acids Res. 33, 6151-6163
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6151-6163
-
-
Silverman, S.K.1
-
13
-
-
0038131065
-
A lead-dependent DNAzyme with a two-step mechanism
-
Brown, A. K., Li, J., Pavot, C. M., and Lu, Y. (2003) A lead-dependent DNAzyme with a two-step mechanism Biochemistry 42, 7152-7161
-
(2003)
Biochemistry
, vol.42
, pp. 7152-7161
-
-
Brown, A.K.1
Li, J.2
Pavot, C.M.3
Lu, Y.4
-
14
-
-
65349162752
-
DNAzymes and their therapeutic possibilities
-
Chan, C. W. and Khachigian, L. M. (2009) DNAzymes and their therapeutic possibilities Intern. Med. J. 39, 249-251
-
(2009)
Intern. Med. J.
, vol.39
, pp. 249-251
-
-
Chan, C.W.1
Khachigian, L.M.2
-
15
-
-
1142281951
-
Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme
-
Cruz, R. P., Withers, J. B., and Li, Y. (2004) Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme Chem. Biol. 11, 57-67
-
(2004)
Chem. Biol.
, vol.11
, pp. 57-67
-
-
Cruz, R.P.1
Withers, J.B.2
Li, Y.3
-
16
-
-
0035914482
-
A new and efficient DNA enzyme for the sequence-specific cleavage of RNA
-
Feldman, A. R. and Sen, D. (2001) A new and efficient DNA enzyme for the sequence-specific cleavage of RNA J. Mol. Biol. 313, 283-294
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 283-294
-
-
Feldman, A.R.1
Sen, D.2
-
17
-
-
34548311711
-
Forty years of in vitro evolution
-
Joyce, G. F. (2007) Forty years of in vitro evolution Angew. Chem., Int. Ed. Engl. 46, 6420-6436
-
(2007)
Angew. Chem., Int. Ed. Engl.
, vol.46
, pp. 6420-6436
-
-
Joyce, G.F.1
-
18
-
-
0034650291
-
In vitro selection and characterization of a highly efficient Zn(II)-dependent RNA-cleaving deoxyribozyme
-
Li, J., Zheng, W., Kwon, A. H., and Lu, Y. (2000) In vitro selection and characterization of a highly efficient Zn(II)-dependent RNA-cleaving deoxyribozyme Nucleic Acids Res. 28, 481-488
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 481-488
-
-
Li, J.1
Zheng, W.2
Kwon, A.H.3
Lu, Y.4
-
20
-
-
49249091384
-
In vitro selection of small RNA-cleaving deoxyribozymes that cleave pyrimidine-pyrimidine junctions
-
Schlosser, K., Gu, J., Lam, J. C., and Li, Y. (2008) In vitro selection of small RNA-cleaving deoxyribozymes that cleave pyrimidine-pyrimidine junctions Nucleic Acids Res. 36, 4768-4777
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 4768-4777
-
-
Schlosser, K.1
Gu, J.2
Lam, J.C.3
Li, Y.4
-
21
-
-
3342955521
-
Tracing sequence diversity change of RNA-cleaving deoxyribozymes under increasing selection pressure during in vitro selection
-
Schlosser, K. and Li, Y. (2004) Tracing sequence diversity change of RNA-cleaving deoxyribozymes under increasing selection pressure during in vitro selection Biochemistry 43, 9695-9707
-
(2004)
Biochemistry
, vol.43
, pp. 9695-9707
-
-
Schlosser, K.1
Li, Y.2
-
22
-
-
77951713609
-
A versatile endoribonuclease mimic made of DNA: Characteristics and applications of the 8-17 RNA-cleaving DNAzyme
-
Schlosser, K. and Li, Y. (2010) A versatile endoribonuclease mimic made of DNA: Characteristics and applications of the 8-17 RNA-cleaving DNAzyme ChemBioChem 11, 866-879
-
(2010)
ChemBioChem
, vol.11
, pp. 866-879
-
-
Schlosser, K.1
Li, Y.2
-
23
-
-
0037089144
-
A general approach for the use of oligonucleotide effectors to regulate the catalysis of RNA-cleaving ribozymes and DNAzymes
-
Wang, D. Y., Lai, B. H., Feldman, A. R., and Sen, D. (2002) A general approach for the use of oligonucleotide effectors to regulate the catalysis of RNA-cleaving ribozymes and DNAzymes Nucleic Acids Res. 30, 1735-1742
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1735-1742
-
-
Wang, D.Y.1
Lai, B.H.2
Feldman, A.R.3
Sen, D.4
-
24
-
-
0035383109
-
Catalytic molecular beacons
-
Stojanovic, M. N., de Prada, P., and Landry, D. W. (2001) Catalytic molecular beacons ChemBioChem 2, 411-415
-
(2001)
ChemBioChem
, vol.2
, pp. 411-415
-
-
Stojanovic, M.N.1
De Prada, P.2
Landry, D.W.3
-
25
-
-
34447547573
-
Smart nanomaterials inspired by biology: Dynamic assembly of error-free nanomaterials in response to multiple chemical and biological stimuli
-
Lu, Y. and Liu, J. (2007) Smart nanomaterials inspired by biology: dynamic assembly of error-free nanomaterials in response to multiple chemical and biological stimuli Acc. Chem. Res. 40, 315-323
-
(2007)
Acc. Chem. Res.
, vol.40
, pp. 315-323
-
-
Lu, Y.1
Liu, J.2
-
26
-
-
0042360338
-
A deoxyribozyme-based molecular automaton
-
Stojanovic, M. N. and Stefanovic, D. (2003) A deoxyribozyme-based molecular automaton Nat. Biotechnol. 21, 1069-1074
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 1069-1074
-
-
Stojanovic, M.N.1
Stefanovic, D.2
-
27
-
-
0041464740
-
Transcription factor Egr-1 supports FGF-dependent angiogenesis during neovascularization and tumor growth
-
Fahmy, R. G., Dass, C. R., Sun, L. Q., Chesterman, C. N., and Khachigian, L. M. (2003) Transcription factor Egr-1 supports FGF-dependent angiogenesis during neovascularization and tumor growth Nat. Med. 9, 1026-1032
-
(2003)
Nat. Med.
, vol.9
, pp. 1026-1032
-
-
Fahmy, R.G.1
Dass, C.R.2
Sun, L.Q.3
Chesterman, C.N.4
Khachigian, L.M.5
-
28
-
-
0032717640
-
New DNA enzyme targeting Egr-1 mRNA inhibits vascular smooth muscle proliferation and regrowth after injury
-
Santiago, F. S., Lowe, H. C., Kavurma, M. M., Chesterman, C. N., Baker, A., Atkins, D. G., and Khachigian, L. M. (1999) New DNA enzyme targeting Egr-1 mRNA inhibits vascular smooth muscle proliferation and regrowth after injury Nat. Med. 5, 1264-1269
-
(1999)
Nat. Med.
, vol.5
, pp. 1264-1269
-
-
Santiago, F.S.1
Lowe, H.C.2
Kavurma, M.M.3
Chesterman, C.N.4
Baker, A.5
Atkins, D.G.6
Khachigian, L.M.7
-
29
-
-
0032912701
-
Target site selection for an RNA-cleaving catalytic DNA
-
Cairns, M. J., Hopkins, T. M., Witherington, C., Wang, L., and Sun, L. Q. (1999) Target site selection for an RNA-cleaving catalytic DNA Nat. Biotechnol. 17, 480-486
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 480-486
-
-
Cairns, M.J.1
Hopkins, T.M.2
Witherington, C.3
Wang, L.4
Sun, L.Q.5
-
30
-
-
0033546334
-
Suppression of smooth muscle cell proliferation by a c-myc RNA-cleaving deoxyribozyme
-
Sun, L. Q., Cairns, M. J., Gerlach, W. L., Witherington, C., Wang, L., and King, A. (1999) Suppression of smooth muscle cell proliferation by a c-myc RNA-cleaving deoxyribozyme J. Biol. Chem. 274, 17236-17241
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17236-17241
-
-
Sun, L.Q.1
Cairns, M.J.2
Gerlach, W.L.3
Witherington, C.4
Wang, L.5
King, A.6
-
31
-
-
0034711950
-
Design of nuclease resistant protein kinase calpha DNA enzymes with potential therapeutic application
-
Sioud, M. and Leirdal, M. (2000) Design of nuclease resistant protein kinase calpha DNA enzymes with potential therapeutic application J. Mol. Biol. 296, 937-947
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 937-947
-
-
Sioud, M.1
Leirdal, M.2
-
32
-
-
0346850835
-
Structural rearrangements of the 10-23 DNAzyme to beta 3 integrin subunit mRNA induced by cations and their relations to the catalytic activity
-
Cieslak, M., Szymanski, J., Adamiak, R. W., and Cierniewski, C. S. (2003) Structural rearrangements of the 10-23 DNAzyme to beta 3 integrin subunit mRNA induced by cations and their relations to the catalytic activity J. Biol. Chem. 278, 47987-47996
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 47987-47996
-
-
Cieslak, M.1
Szymanski, J.2
Adamiak, R.W.3
Cierniewski, C.S.4
-
33
-
-
0344442416
-
RNA cleaving "10-23" DNAzymes with enhanced stability and activity
-
Schubert, S., Gul, D. C., Grunert, H. P., Zeichhardt, H., Erdmann, V. A., and Kurreck, J. (2003) RNA cleaving "10-23" DNAzymes with enhanced stability and activity Nucleic Acids Res. 31, 5982-5992
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 5982-5992
-
-
Schubert, S.1
Gul, D.C.2
Grunert, H.P.3
Zeichhardt, H.4
Erdmann, V.A.5
Kurreck, J.6
-
34
-
-
33645236034
-
Suppression of inducible nitric oxide synthase by 10-23 DNAzymes in murine macrophage
-
Chaudhury, I., Raghav, S. K., Gautam, H. K., Das, H. R., and Das, R. H. (2006) Suppression of inducible nitric oxide synthase by 10-23 DNAzymes in murine macrophage FEBS Lett. 580, 2046-2052
-
(2006)
FEBS Lett.
, vol.580
, pp. 2046-2052
-
-
Chaudhury, I.1
Raghav, S.K.2
Gautam, H.K.3
Das, H.R.4
Das, R.H.5
-
35
-
-
51849115599
-
The use of 10-23 DNAzyme to selectively destroy the allele of mRNA with a unique purine-pyrimidine dinucleotide
-
Wang, T. H., Li, W. T., Yu, S. H., and Au, L. C. (2008) The use of 10-23 DNAzyme to selectively destroy the allele of mRNA with a unique purine-pyrimidine dinucleotide Oligonucleotides 18, 295-299
-
(2008)
Oligonucleotides
, vol.18
, pp. 295-299
-
-
Wang, T.H.1
Li, W.T.2
Yu, S.H.3
Au, L.C.4
-
36
-
-
34249782553
-
Metal-dependent global folding and activity of the 8-17 DNAzyme studied by fluorescence resonance energy transfer
-
Kim, H. K., Liu, J., Li, J., Nagraj, N., Li, M., Pavot, C. M., and Lu, Y. (2007) Metal-dependent global folding and activity of the 8-17 DNAzyme studied by fluorescence resonance energy transfer J. Am. Chem. Soc. 129, 6896-6902
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 6896-6902
-
-
Kim, H.K.1
Liu, J.2
Li, J.3
Nagraj, N.4
Li, M.5
Pavot, C.M.6
Lu, Y.7
-
37
-
-
41149095145
-
Sequence-function relationships provide new insight into the cleavage site selectivity of the 8-17 RNA-cleaving deoxyribozyme
-
Schlosser, K., Gu, J., Sule, L., and Li, Y. (2008) Sequence-function relationships provide new insight into the cleavage site selectivity of the 8-17 RNA-cleaving deoxyribozyme Nucleic Acids Res. 36, 1472-1481
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 1472-1481
-
-
Schlosser, K.1
Gu, J.2
Sule, L.3
Li, Y.4
-
38
-
-
67849122394
-
Activity, folding and Z-DNA formation of the 8-17 DNAzyme in the presence of monovalent ions
-
Mazumdar, D., Nagraj, N., Kim, H. K., Meng, X., Brown, A. K., Sun, Q., Li, W., and Lu, Y. (2009) Activity, folding and Z-DNA formation of the 8-17 DNAzyme in the presence of monovalent ions J. Am. Chem. Soc. 131, 5506-5515
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 5506-5515
-
-
Mazumdar, D.1
Nagraj, N.2
Kim, H.K.3
Meng, X.4
Brown, A.K.5
Sun, Q.6
Li, W.7
Lu, Y.8
-
39
-
-
36248936102
-
Dissecting metal ion-dependent folding and catalysis of a single DNAzyme
-
Kim, H. K., Rasnik, I., Liu, J., Ha, T., and Lu, Y. (2007) Dissecting metal ion-dependent folding and catalysis of a single DNAzyme Nat. Chem. Biol. 3, 763-768
-
(2007)
Nat. Chem. Biol.
, vol.3
, pp. 763-768
-
-
Kim, H.K.1
Rasnik, I.2
Liu, J.3
Ha, T.4
Lu, Y.5
-
40
-
-
0037176245
-
FRET study of a trifluorophore-labeled DNAzyme
-
Liu, J. and Lu, Y. (2002) FRET study of a trifluorophore-labeled DNAzyme J. Am. Chem. Soc. 124, 15208-15216
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 15208-15216
-
-
Liu, J.1
Lu, Y.2
-
41
-
-
37849026396
-
Folding of 8-17 deoxyribozyme studied by three-color alternating-laser excitation of single molecules
-
Lee, N. K., Koh, H. R., Han, K. Y., and Kim, S. K. (2007) Folding of 8-17 deoxyribozyme studied by three-color alternating-laser excitation of single molecules J. Am. Chem. Soc. 129, 15526-15534
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 15526-15534
-
-
Lee, N.K.1
Koh, H.R.2
Han, K.Y.3
Kim, S.K.4
-
42
-
-
72149121596
-
Coarse-grained brownian dynamics simulations of the 10-23 DNAzyme
-
Kenward, M. and Dorfman, K. D. (2009) Coarse-grained brownian dynamics simulations of the 10-23 DNAzyme Biophys. J. 97, 2785-2793
-
(2009)
Biophys. J.
, vol.97
, pp. 2785-2793
-
-
Kenward, M.1
Dorfman, K.D.2
-
43
-
-
24644514250
-
A mutational analysis of the 8-17 deoxyribozyme core
-
Peracchi, A., Bonaccio, M., and Clerici, M. (2005) A mutational analysis of the 8-17 deoxyribozyme core J. Mol. Biol. 352, 783-794
-
(2005)
J. Mol. Biol.
, vol.352
, pp. 783-794
-
-
Peracchi, A.1
Bonaccio, M.2
Clerici, M.3
-
44
-
-
33846308160
-
Electron hole flow patterns through the RNA-cleaving 8-17 deoxyribozyme yield unusual information about its structure and folding
-
Leung, E. K. and Sen, D. (2007) Electron hole flow patterns through the RNA-cleaving 8-17 deoxyribozyme yield unusual information about its structure and folding Chem. Biol. 14, 41-51
-
(2007)
Chem. Biol.
, vol.14
, pp. 41-51
-
-
Leung, E.K.1
Sen, D.2
-
45
-
-
0037175009
-
Sequence requirements in the catalytic core of the "10-23" DNA enzyme
-
Zaborowska, Z., Furste, J. P., Erdmann, V. A., and Kurreck, J. (2002) Sequence requirements in the catalytic core of the "10-23" DNA enzyme J. Biol. Chem. 277, 40617-40622
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 40617-40622
-
-
Zaborowska, Z.1
Furste, J.P.2
Erdmann, V.A.3
Kurreck, J.4
-
46
-
-
11844276654
-
Deletion analysis in the catalytic region of the 10-23 DNA enzyme
-
Zaborowska, Z., Schubert, S., Kurreck, J., and Erdmann, V. A. (2005) Deletion analysis in the catalytic region of the 10-23 DNA enzyme FEBS Lett. 579, 554-558
-
(2005)
FEBS Lett.
, vol.579
, pp. 554-558
-
-
Zaborowska, Z.1
Schubert, S.2
Kurreck, J.3
Erdmann, V.A.4
-
47
-
-
0028212147
-
Short optimally capped duplex DNA as conformationally restricted analog of B-DNA
-
Bannwarth, W., Dorn, A., Iaiza, P., and Pannekouke, X. (1994) Short optimally capped duplex DNA as conformationally restricted analog of B-DNA Helv. Chim. Acta 77, 182-193
-
(1994)
Helv. Chim. Acta
, vol.77
, pp. 182-193
-
-
Bannwarth, W.1
Dorn, A.2
Iaiza, P.3
Pannekouke, X.4
-
48
-
-
0023664684
-
Oligodeoxynucleotides containing synthetic abasic sites-model substrates for DNA-polymerases and apurinic apyrimidinic endonucleases
-
Takeshita, M., Chang, C. N., Johnson, F., Will, S., and Grollman, A. P. (1987) Oligodeoxynucleotides containing synthetic abasic sites-model substrates for DNA-polymerases and apurinic apyrimidinic endonucleases J. Biol. Chem. 262, 10171-10179
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 10171-10179
-
-
Takeshita, M.1
Chang, C.N.2
Johnson, F.3
Will, S.4
Grollman, A.P.5
|