메뉴 건너뛰기




Volumn 303, Issue 11, 2012, Pages

Systems biology in physiology: The vasopressin signaling network in kidney

Author keywords

Aquaporin 2; Collecting duct; Mass spectrometry; Nedd4 2; Phosphoproteomics; Signaling networks

Indexed keywords

PROLINE DIRECTED PROTEIN KINASE; PROTEIN KINASE; VASOPRESSIN;

EID: 84870479255     PISSN: 03636143     EISSN: 15221563     Source Type: Journal    
DOI: 10.1152/ajpcell.00270.2012     Document Type: Review
Times cited : (24)

References (79)
  • 1
    • 83755188107 scopus 로고    scopus 로고
    • Application of structure equation modeling for inferring a serial transcriptional regulation in yeast
    • Aburatani S. Application of structure equation modeling for inferring a serial transcriptional regulation in yeast. Gene Regul Syst Bio 5: 75-88, 2011.
    • (2011) Gene Regul Syst Bio , vol.5 , pp. 75-88
    • Aburatani, S.1
  • 3
    • 62449106161 scopus 로고    scopus 로고
    • Expression Profiling Using Affymetrix GeneChip Microarrays
    • Auer H, Newsom DL, Kornacker K. Expression Profiling Using Affymetrix GeneChip Microarrays. Methods Mol Biol 509: 35-46, 2009.
    • (2009) Methods Mol Biol , vol.509 , pp. 35-46
    • Auer, H.1    Newsom, D.L.2    Kornacker, K.3
  • 4
    • 84870558665 scopus 로고    scopus 로고
    • Large-scale LCMS/ MS analysis of collecting duct phosphoproteome reveals three vasopressin-regulated phosphorylation sites on urea transporter (UT-A) (Abstract)
    • Bansal AD, Hoffert JD, Pisitkun T, Knepper MA. Large-scale LCMS/ MS analysis of collecting duct phosphoproteome reveals three vasopressin-regulated phosphorylation sites on urea transporter (UT-A) (Abstract). J Am Soc Nephrol 20: 828A, 2009.
    • (2009) J Am Soc Nephrol , vol.20
    • Bansal, A.D.1    Hoffert, J.D.2    Pisitkun, T.3    Knepper, M.A.4
  • 6
    • 24044432222 scopus 로고    scopus 로고
    • Large scale protein identification in intracellular aquaporin-2 vesicles from renal inner medullary collecting duct
    • Barile M, Pisitkun T, Yu MJ, Chou CL, Verbalis MJ, Shen RF, Knepper MA. Large scale protein identification in intracellular aquaporin-2 vesicles from renal inner medullary collecting duct. Mol Cell Proteomics 4: 1095-1106, 2005.
    • (2005) Mol Cell Proteomics , vol.4 , pp. 1095-1106
    • Barile, M.1    Pisitkun, T.2    Yu, M.J.3    Chou, C.L.4    Verbalis, M.J.5    Shen, R.F.6    Knepper, M.A.7
  • 7
    • 0013920263 scopus 로고
    • Preparation and study of fragments of single rabbit nephrons
    • Burg MB, Grantham JJ, Abramow M, Orloff J. Preparation and study of fragments of single rabbit nephrons. Am J Physiol 210: 1293-1298, 1966.
    • (1966) Am J Physiol , vol.210 , pp. 1293-1298
    • Burg, M.B.1    Grantham, J.J.2    Abramow, M.3    Orloff, J.4
  • 8
    • 38349159301 scopus 로고    scopus 로고
    • Quantitative proteomics for identification of cancer biomarkers
    • Chaerkady R, Pandey A. Quantitative proteomics for identification of cancer biomarkers. Proteomics Clin Appl 1: 1080-1089, 2007.
    • (2007) Proteomics Clin Appl , vol.1 , pp. 1080-1089
    • Chaerkady, R.1    Pandey, A.2
  • 9
    • 0027360635 scopus 로고
    • Protein kinase C alpha, delta, epsilon and zeta in C6 glioma cells. TPA induces translocation and down-regulation of conventional and new PKC isoforms but not atypical PKC zeta
    • Chen CC. Protein kinase C alpha, delta, epsilon and zeta in C6 glioma cells. TPA induces translocation and down-regulation of conventional and new PKC isoforms but not atypical PKC zeta. FEBS Lett 332: 169-173, 1993.
    • (1993) FEBS Lett , vol.332 , pp. 169-173
    • Chen, C.C.1
  • 10
    • 0024374053 scopus 로고
    • Inhibition of urea transport in inner medullary collecting duct by phloretin and urea analogues
    • Chou CL, Knepper MA. Inhibition of urea transport in inner medullary collecting duct by phloretin and urea analogues. Am J Physiol Renal Fluid Electrolyte Physiol 257: F359-F365, 1989.
    • (1989) Am J Physiol Renal Fluid Electrolyte Physiol , vol.257
    • Chou, C.L.1    Knepper, M.A.2
  • 12
    • 0025095794 scopus 로고
    • Expression of mammalian renal transporters in Xenopus laevis oocytes
    • Coady MJ, Pajor AM, Toloza EM, Wright EM. Expression of mammalian renal transporters in Xenopus laevis oocytes. Arch Biochem Biophys 283: 130-134, 1990.
    • (1990) Arch Biochem Biophys , vol.283 , pp. 130-134
    • Coady, M.J.1    Pajor, A.M.2    Toloza, E.M.3    Wright, E.M.4
  • 13
    • 0028567038 scopus 로고
    • Regulation of collecting duct water channel expression by vasopressin in Brattleboro rat
    • DiGiovanni SR, Nielsen S, Christensen EI, Knepper MA. Regulation of collecting duct water channel expression by vasopressin in Brattleboro rat. Proc Natl Acad Sci USA 91: 8984-8988, 1994.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 8984-8988
    • DiGiovanni, S.R.1    Nielsen, S.2    Christensen, E.I.3    Knepper, M.A.4
  • 17
    • 2442555092 scopus 로고    scopus 로고
    • Urinary concentrating defect in mice with selective deletion of phloretin-sensitive urea transporters in the renal collecting duct
    • Fenton RA, Chou CL, Stewart GS, Smith CP, Knepper MA. Urinary concentrating defect in mice with selective deletion of phloretin-sensitive urea transporters in the renal collecting duct. Proc Natl Acad Sci USA 101: 7469-7474, 2004.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 7469-7474
    • Fenton, R.A.1    Chou, C.L.2    Stewart, G.S.3    Smith, C.P.4    Knepper, M.A.5
  • 19
    • 79955149260 scopus 로고    scopus 로고
    • Large-scale phosphoproteomic analysis of membrane proteins in renal proximal and distal tubule
    • Feric M, Zhao B, Hoffert JD, Pisitkun T, Knepper MA. Large-scale phosphoproteomic analysis of membrane proteins in renal proximal and distal tubule. Am J Physiol Cell Physiol 300: C755-C770, 2011.
    • (2011) Am J Physiol Cell Physiol , vol.300
    • Feric, M.1    Zhao, B.2    Hoffert, J.D.3    Pisitkun, T.4    Knepper, M.A.5
  • 20
    • 0027459174 scopus 로고
    • Cloning and expression of apical membrane water channel of rat kidney collecting tubule
    • Fushimi K, Uchida S, Hara Y, Hirata Y, Marumo F, Sasaki S. Cloning and expression of apical membrane water channel of rat kidney collecting tubule. Nature 361: 549-552, 1993.
    • (1993) Nature , vol.361 , pp. 549-552
    • Fushimi, K.1    Uchida, S.2    Hara, Y.3    Hirata, Y.4    Marumo, F.5    Sasaki, S.6
  • 21
    • 0011431030 scopus 로고
    • Renal tubular transfer of sodium chloride and potassium
    • Giebisch G, Windhager EE. Renal tubular transfer of sodium chloride and potassium. Am J Med 36: 643-669, 1964.
    • (1964) Am J Med , vol.36 , pp. 643-669
    • Giebisch, G.1    Windhager, E.E.2
  • 22
    • 84855658379 scopus 로고    scopus 로고
    • Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis
    • Goel R, Harsha HC, Pandey A, Prasad TS. Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis. Mol Biosyst 8: 453-463, 2012.
    • (2012) Mol Biosyst , vol.8 , pp. 453-463
    • Goel, R.1    Harsha, H.C.2    Pandey, A.3    Prasad, T.S.4
  • 23
    • 77957272228 scopus 로고    scopus 로고
    • Quantitative phosphoproteomic analysis reveals cAMP/vasopressin-dependent signaling pathways in native renal thick ascending limb cells
    • Gunaratne R, Braucht DW, Rinschen MM, Chou CL, Hoffert JD, Pisitkun T, Knepper MA. Quantitative phosphoproteomic analysis reveals cAMP/vasopressin-dependent signaling pathways in native renal thick ascending limb cells. Proc Natl Acad Sci USA 107: 15653-15658, 2010.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 15653-15658
    • Gunaratne, R.1    Braucht, D.W.2    Rinschen, M.M.3    Chou, C.L.4    Hoffert, J.D.5    Pisitkun, T.6    Knepper, M.A.7
  • 24
    • 76749141419 scopus 로고    scopus 로고
    • Identification of crosstalk between phosphoprotein signaling pathways in RAW 264.7 macrophage cells
    • Gupta S, Maurya MR, Subramaniam S. Identification of crosstalk between phosphoprotein signaling pathways in RAW 264.7 macrophage cells. PLoS Comput Biol 6: e1000654, 2010.
    • (2010) PLoS Comput Biol , vol.6
    • Gupta, S.1    Maurya, M.R.2    Subramaniam, S.3
  • 26
    • 0026877020 scopus 로고
    • Experimental tests of three-dimensional model of urinary concentrating mechanism
    • Han JS, Thompson KA, Chou CL, Knepper MA. Experimental tests of three-dimensional model of urinary concentrating mechanism. J Am Soc Nephrol 2: 1677-1688, 1992.
    • (1992) J Am Soc Nephrol , vol.2 , pp. 1677-1688
    • Han, J.S.1    Thompson, K.A.2    Chou, C.L.3    Knepper, M.A.4
  • 27
    • 77953808473 scopus 로고    scopus 로고
    • Next-generation genomics: An integrative approach
    • Hawkins RD, Hon GC, Ren B. Next-generation genomics: an integrative approach. Nat Rev Genet 11: 476-486, 2010.
    • (2010) Nat Rev Genet , vol.11 , pp. 476-486
    • Hawkins, R.D.1    Hon, G.C.2    Ren, B.3
  • 31
    • 39749091667 scopus 로고    scopus 로고
    • Taking aim at shotgun phosphoproteomics
    • Hoffert JD, Knepper MA. Taking aim at shotgun phosphoproteomics. Anal Biochem 375: 1-10, 2008.
    • (2008) Anal Biochem , vol.375 , pp. 1-10
    • Hoffert, J.D.1    Knepper, M.A.2
  • 33
    • 84856743821 scopus 로고    scopus 로고
    • Dynamics of the G protein-coupled vasopressin V2 receptor signaling network revealed by quantitative phosphoproteomics
    • Hoffert JD, Pisitkun T, Saeed F, Song JH, Chou CL, Knepper MA. Dynamics of the G protein-coupled vasopressin V2 receptor signaling network revealed by quantitative phosphoproteomics. Mol Cell Proteomics 11: M111, 2012.
    • (2012) Mol Cell Proteomics , vol.11
    • Hoffert, J.D.1    Pisitkun, T.2    Saeed, F.3    Song, J.H.4    Chou, C.L.5    Knepper, M.A.6
  • 34
    • 33646485094 scopus 로고    scopus 로고
    • Quantitative phosphoproteomics of vasopressin-sensitive renal cells: Regulation of aquaporin-2 phosphorylation at two sites
    • Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA. Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites. Proc Natl Acad Sci USA 103: 7159-7164, 2006.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 7159-7164
    • Hoffert, J.D.1    Pisitkun, T.2    Wang, G.3    Shen, R.F.4    Knepper, M.A.5
  • 36
    • 34948851348 scopus 로고    scopus 로고
    • An automated platform for analysis of phosphoproteomic datasets: Application to kidney collecting duct phosphoproteins
    • Hoffert JD, Wang G, Pisitkun T, Shen RF, Knepper MA. An automated platform for analysis of phosphoproteomic datasets: application to kidney collecting duct phosphoproteins. J Proteome Res 6: 3501-3508, 2007.
    • (2007) J Proteome Res , vol.6 , pp. 3501-3508
    • Hoffert, J.D.1    Wang, G.2    Pisitkun, T.3    Shen, R.F.4    Knepper, M.A.5
  • 39
    • 33750351769 scopus 로고    scopus 로고
    • Data-driven modelling of signal-transduction networks
    • Janes KA, Yaffe MB. Data-driven modelling of signal-transduction networks. Nat Rev Mol Cell Biol 7: 820-828, 2006.
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 820-828
    • Janes, K.A.1    Yaffe, M.B.2
  • 40
    • 84864944169 scopus 로고    scopus 로고
    • Modeling the latent dimensions of multivariate signaling datasets
    • Jensen KJ, Janes KA. Modeling the latent dimensions of multivariate signaling datasets. Phys Biol 9: 045004, 2012.
    • (2012) Phys Biol , vol.9 , pp. 045004
    • Jensen, K.J.1    Janes, K.A.2
  • 41
  • 46
  • 47
    • 14844318077 scopus 로고    scopus 로고
    • When kinases meet mathematics: The systems biology of MAPK signalling
    • Kolch W, Calder M, Gilbert D. When kinases meet mathematics: the systems biology of MAPK signalling. FEBS Lett 579: 1891-1895, 2005.
    • (2005) FEBS Lett , vol.579 , pp. 1891-1895
    • Kolch, W.1    Calder, M.2    Gilbert, D.3
  • 51
    • 34848831125 scopus 로고    scopus 로고
    • Molecular regulation of kidney development: Is the answer blowing in the Wnt
    • Merkel CE, Karner CM, Carroll TJ. Molecular regulation of kidney development: is the answer blowing in the Wnt? Pediatr Nephrol 22: 1825-1838, 2007.
    • (2007) Pediatr Nephrol , vol.22 , pp. 1825-1838
    • Merkel, C.E.1    Karner, C.M.2    Carroll, T.J.3
  • 54
    • 0017235019 scopus 로고
    • Sodium/proton antiport in brush border membrane vesicles isolated from rat small intestine and kidney
    • Murer H, Hopfer U, Kinne R. Sodium/proton antiport in brush border membrane vesicles isolated from rat small intestine and kidney. Biochem J 154: 597-604, 1976.
    • (1976) Biochem J , vol.154 , pp. 597-604
    • Murer, H.1    Hopfer, U.2    Kinne, R.3
  • 55
    • 0028889112 scopus 로고
    • Vasopressin increases water permeability of kidney collecting duct by inducing translocation of aquaporin-CD water channels to plasma membrane
    • Nielsen S, Chou CL, Marples D, Christensen EI, Kishore BK, Knepper MA. Vasopressin increases water permeability of kidney collecting duct by inducing translocation of aquaporin-CD water channels to plasma membrane. Proc Natl Acad Sci USA 92: 1013-1017, 1995.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 1013-1017
    • Nielsen, S.1    Chou, C.L.2    Marples, D.3    Christensen, E.I.4    Kishore, B.K.5    Knepper, M.A.6
  • 58
    • 0034659815 scopus 로고    scopus 로고
    • Proteomics to study genes and genomes
    • Pandey A, Mann M. Proteomics to study genes and genomes. Nature 405: 837-846, 2000.
    • (2000) Nature , vol.405 , pp. 837-846
    • Pandey, A.1    Mann, M.2
  • 61
    • 84868503645 scopus 로고    scopus 로고
    • Quantitative phosphoproteomics to characterize signaling networks
    • 2012.05.006
    • Rigbolt KT, Blagoev B. Quantitative phosphoproteomics to characterize signaling networks. Semin Cell Dev Biol. http://dx.doi.org/10.1016/j.semcdb. 2012.05.006.
    • Semin Cell Dev Biol
    • Rigbolt, K.T.1    Blagoev, B.2
  • 62
    • 77649253480 scopus 로고    scopus 로고
    • Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor-dependent signaling pathways in renal collecting duct cells
    • Rinschen MM, Yu MJ, Wang G, Boja ES, Hoffert JD, Pisitkun T, Knepper MA. Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor-dependent signaling pathways in renal collecting duct cells. Proc Natl Acad Sci USA 107: 3882-3887, 2010.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 3882-3887
    • Rinschen, M.M.1    Yu, M.J.2    Wang, G.3    Boja, E.S.4    Hoffert, J.D.5    Pisitkun, T.6    Knepper, M.A.7
  • 63
    • 57349091768 scopus 로고    scopus 로고
    • LC-MS/MS analysis of differential centrifugation fractions from native inner medullary collecting duct of rat
    • Sachs AN, Pisitkun T, Hoffert JD, Yu MJ, Knepper MA. LC-MS/MS analysis of differential centrifugation fractions from native inner medullary collecting duct of rat. Am J Physiol Renal Physiol 295: F1799-F1806, 2008.
    • (2008) Am J Physiol Renal Physiol , vol.295
    • Sachs, A.N.1    Pisitkun, T.2    Hoffert, J.D.3    Yu, M.J.4    Knepper, M.A.5
  • 67
    • 79952051920 scopus 로고    scopus 로고
    • Assessing quality and completeness of human transcriptional regulatory pathways on a genomewide scale
    • Shmelkov E, Tang Z, Aifantis I, Statnikov A. Assessing quality and completeness of human transcriptional regulatory pathways on a genomewide scale. Biol Direct 6: 15, 2011.
    • (2011) Biol Direct , vol.6 , pp. 15
    • Shmelkov, E.1    Tang, Z.2    Aifantis, I.3    Statnikov, A.4
  • 72
    • 34250638276 scopus 로고    scopus 로고
    • Determining protein kinase substrate specificity by parallel solution-phase assay of large numbers of peptide substrates
    • Turk BE, Hutti JE, Cantley LC. Determining protein kinase substrate specificity by parallel solution-phase assay of large numbers of peptide substrates. Nat Protoc 1: 375-379, 2006.
    • (2006) Nat Protoc , vol.1 , pp. 375-379
    • Turk, B.E.1    Hutti, J.E.2    Cantley, L.C.3
  • 73
    • 38749151529 scopus 로고    scopus 로고
    • Transcriptional profiling of native inner medullary collecting duct cells from rat kidney
    • Uawithya P, Pisitkun T, Ruttenberg BE, Knepper MA. Transcriptional profiling of native inner medullary collecting duct cells from rat kidney. Physiol Genomics 32: 229-253, 2008.
    • (2008) Physiol Genomics , vol.32 , pp. 229-253
    • Uawithya, P.1    Pisitkun, T.2    Ruttenberg, B.E.3    Knepper, M.A.4
  • 74
    • 5044227742 scopus 로고    scopus 로고
    • The evolution of molecular biology into systems biology
    • Westerhoff HV, Palsson BO. The evolution of molecular biology into systems biology. Nat Biotechnol 22: 1249-1252, 2004.
    • (2004) Nat Biotechnol , vol.22 , pp. 1249-1252
    • Westerhoff, H.V.1    Palsson, B.O.2
  • 76
    • 0027372483 scopus 로고
    • Cloning and characterization of the vasopressin-regulated urea transporter
    • You G, Smith CP, Kanai Y, Lee WS, Stelzner M, Hediger MA. Cloning and characterization of the vasopressin-regulated urea transporter. Nature 365: 844-847, 1993.
    • (1993) Nature , vol.365 , pp. 844-847
    • You, G.1    Smith, C.P.2    Kanai, Y.3    Lee, W.S.4    Stelzner, M.5    Hediger, M.A.6
  • 79
    • 83455208140 scopus 로고    scopus 로고
    • Large-scale phosphotyrosine proteomic profiling of rat renal collecting duct epithelium reveals predominance of proteins involved in cell polarity determination
    • Zhao B, Knepper MA, Chou CL, Pisitkun T. Large-scale phosphotyrosine proteomic profiling of rat renal collecting duct epithelium reveals predominance of proteins involved in cell polarity determination. Am J Physiol Cell Physiol 302: C27-C45, 2012.
    • (2012) Am J Physiol Cell Physiol , vol.302
    • Zhao, B.1    Knepper, M.A.2    Chou, C.L.3    Pisitkun, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.