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Volumn 2012, Issue , 2012, Pages

Text mining for the biocuration workflow

(15)  Hirschman, Lynette a   Burns, Gully A P C b   Krallinger, Martin c   Arighi, Cecilia d   Cohen, K Bretonnel e   Valencia, Alfonso c   Wu, Cathy H d,f   Chatr Aryamontri, Andrew g   Dowell, Karen G h,i   Huala, Eva j   Lourenço, Anália k   Nash, Robert l   Veuthey, Anne Lise m   Wiegers, Thomas n   Winter, Andrew G o  


Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; DATA MINING; FACTUAL DATABASE; HUMAN; MEDICAL RESEARCH; NATURAL LANGUAGE PROCESSING; WORKFLOW;

EID: 84862261069     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bas020     Document Type: Article
Times cited : (129)

References (20)
  • 1
    • 78651341450 scopus 로고    scopus 로고
    • The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection
    • Galperin, M. Y. and Cochrane, G. R. (2011) The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. Nucleic Acids Res., 39 (Suppl 1), D1-D6.
    • (2011) Nucleic Acids Res. , Issue.39 SUPPL. 1
    • Galperin, M.Y.1    Cochrane, G.R.2
  • 2
    • 41949113537 scopus 로고    scopus 로고
    • The Taverna Interaction Service: Enabling manual interaction in workflows
    • DOI 10.1093/bioinformatics/btn082
    • Lanzen, A. and Oinn, T. (2008) The Taverna Interaction Service: enabling manual interaction in workflows. Bioinformatics, 24, 1118-1120. (Pubitemid 351514068)
    • (2008) Bioinformatics , vol.24 , Issue.8 , pp. 1118-1120
    • Lanzen, A.1    Oinn, T.2
  • 4
    • 84875074776 scopus 로고    scopus 로고
    • Biocuration workflow catalogue-text mining for the biocuration workflow
    • March 2012, date last accessed)
    • Burns, G. A. P. C., Krallinger, M., Cohen, K. B. et al. (2009) Biocuration Workflow Catalogue-Text Mining for the Biocuration Workflow, Nature Precedings. http://dx.doi.org/10.1038/npre.2009.3250.1(2March 2012, date last accessed).
    • (2009) Nature Precedings.
    • Burns, G.A.P.C.1    Krallinger, M.2    Cohen, K.B.3
  • 5
    • 80053417815 scopus 로고    scopus 로고
    • A Framework for BioCuration Workflows (part II)
    • (2 March 2012, date last accessed). 3126.1 (2 March 2012, date last accessed)
    • Krallinger, M. (2009) A Framework for BioCuration Workflows (part II). Nature Precedings. http://dx.doi.org/10.1038/npre.2009.3126.1(2 March 2012, date last accessed). 3126.1 (2 March 2012, date last accessed).
    • (2009) Nature Precedings.
    • Krallinger, M.1
  • 6
    • 14044254746 scopus 로고    scopus 로고
    • Textpresso: An ontology-based information retrieval and extraction system for biological literature
    • Muller, H. M., Kenny, E. E. and Sternberg, P. W. (2004) Textpresso: an ontology-based information retrieval and extraction system for biological literature. PLoS Biol., 2, e309.
    • (2004) PLoS Biol. , vol.2
    • Muller, H.M.1    Kenny, E.E.2    Sternberg, P.W.3
  • 7
    • 70449720821 scopus 로고    scopus 로고
    • Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)
    • Wiegers, T. C., Davis, A. P., Cohen, K. B. et al. (2009) Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD). BMC Bioinformatics, 10, 326.
    • (2009) BMC Bioinformatics , vol.10 , pp. 326
    • Wiegers, T.C.1    Davis, A.P.2    Cohen, K.B.3
  • 8
    • 34548493473 scopus 로고    scopus 로고
    • Automating document classification for the Immune Epitope Database
    • Wang, P., Morgan, A. A., Zhang, Q. et al. (2007) Automating document classification for the Immune Epitope Database. BMC Bioinformatics, 8, 269.
    • (2007) BMC Bioinformatics , vol.8 , pp. 269
    • Wang, P.1    Morgan, A.A.2    Zhang, Q.3
  • 10
    • 77951617986 scopus 로고    scopus 로고
    • Integration of open access literature into the RCSB Protein Data Bank using BioLit
    • Prlic, A., Martinez, M. A., Dimitropoulos, D. et al. (2010) Integration of open access literature into the RCSB Protein Data Bank using BioLit. BMC Bioinformatics, 11, 220.
    • (2010) BMC Bioinformatics , Issue.11 , pp. 220
    • Prlic, A.1    Martinez, M.A.2    Dimitropoulos, D.3
  • 11
    • 77956665000 scopus 로고    scopus 로고
    • The FEBS letters/biocreative I I.5 experiment: Making biological information accessible
    • Leitner, F., Chatr-aryamontri, A., Mardis, S. et al. (2010) The FEBS Letters/BioCreative I I.5 experiment: making biological information accessible. Nat. Biotechnol., 28, 897-899.
    • (2010) Nat. Biotechnol. , Issue.28 , pp. 897-899
    • Leitner, F.1    Chatr-aryamontri, A.2    Mardis, S.3
  • 12
    • 80053393894 scopus 로고    scopus 로고
    • BioCreative III interactive task: An overview
    • Arighi, C., Roberts, P., Argawal, S. et al. (2011) BioCreative III Interactive Task: an Overview. BMC Bioinformatics, 12 (Suppl 8), S1.
    • (2011) BMC Bioinformatics , Issue.12 SUPPL. 8
    • Arighi, C.1    Roberts, P.2    Argawal, S.3
  • 13
    • 51049088875 scopus 로고    scopus 로고
    • Overview of the protein-protein interaction annotation extraction task of BioCreative II
    • Krallinger, M., Leitner, F., Rodriguez-Penagos, C. and Valencia, A. (2008) Overview of the protein-protein interaction annotation extraction task of BioCreative I I. Genome Biol., 9 (Suppl 2), S4.
    • (2008) Genome Biol. , vol.9 , Issue.SUPPL. 2
    • Krallinger, M.1    Leitner, F.2    Rodriguez-Penagos, C.3    Valencia, A.4
  • 14
    • 84875081365 scopus 로고    scopus 로고
    • Bringing text miners and biologists closer together
    • (2 March 2012, date last accessed)
    • Lourenço, A., Carneiro, S., Carreira, R. et al. (2009) Bringing Text Miners and Biologists Closer Together. Nature Precedings. http://dx.doi.org/10.1038/npre.2009.3188.1(2March 2012, date last accessed).
    • (2009) Nature Precedings.
    • Lourenço, A.1    Carneiro, S.2    Carreira, R.3
  • 15
    • 84908088795 scopus 로고    scopus 로고
    • Integrating text mining into the MGI biocuration workflow
    • bap019
    • Dowell, K. G., McAndrews-Hill, M. S., Hill, D. P. et al. (2009) Integrating text mining into the MGI biocuration workflow. Database., 2009, bap019.
    • (2009) Database. , vol.2009
    • Dowell, K.G.1    McAndrews-Hill, M.S.2    Hill, D.P.3
  • 16
    • 80053434093 scopus 로고    scopus 로고
    • Text mining for Swiss-Prot curation: A story of success and failure
    • 2 March 2012, date last accessed)
    • Veuthey, A.- L., Pillet, V., Yip, Y. L. and Ruch, P. (2009) Text mining for Swiss-Prot curation: A story of success and failure. Nature Precedings. http://dx.doi.org/10.1038/npre.2009.3166.1(2March 2012, date last accessed).
    • (2009) Nature Precedings.
    • Veuthey A.-, L.1    Pillet, V.2    Yip, Y.L.3    Ruch, P.4
  • 17
    • 41249090605 scopus 로고    scopus 로고
    • Linking entries in protein interaction database to structured text: The FEBS Letters experiment
    • Ceol, A., Chatr-Aryamontri, A., Licata, L. and Cesareni, G. (2008) Linking entries in protein interaction database to structured text: the FEBS Letters experiment. FEBS Lett., 582, 1171-1177.
    • (2008) FEBS Lett. , vol.582 , pp. 1171-1177
    • Ceol, A.1    Chatr-Aryamontri, A.2    Licata, L.3    Cesareni, G.4
  • 18
    • 84875079142 scopus 로고    scopus 로고
    • Using the gene ontology to annotate biomedical journal articles
    • (2March 2012, date last accessed)
    • Bada, M. and Hunter, L. (2009) Using the Gene Ontology to Annotate Biomedical Journal Articles. Nature Precedings. http://dx.doi.org/10.1038/npre. 2009.3556.1(2March 2012, date last accessed).
    • (2009) Nature Precedings.
    • Bada, M.1    Hunter, L.2
  • 19
    • 34248596804 scopus 로고    scopus 로고
    • Structured digital abstract makes text mining easy [1]
    • DOI 10.1038/447142a, PII 447142A
    • Gerstein, M., Seringhaus, M. and Fields, S. (2007) Structured digital abstract makes text mining easy. Nature, 447, 142. (Pubitemid 46763062)
    • (2007) Nature , vol.447 , Issue.7141 , pp. 142
    • Gerstein, M.1    Seringhaus, M.2    Fields, S.3
  • 20
    • 34447539654 scopus 로고    scopus 로고
    • Text mining: Powering the database revolution [6]
    • DOI 10.1038/448130b, PII 448130B
    • Hahn, U., Wermter, J., Blasczyk, R. and Horn, P. A. (2007) Text mining: powering the database revolution. Nature, 448, 130. (Pubitemid 47067358)
    • (2007) Nature , vol.448 , Issue.7150 , pp. 130
    • Hahn, U.1    Wermter, J.2    Blasczyk, R.3    Horn, P.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.