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Volumn , Issue , 2011, Pages 269-284

MicroRNAs in Plant Roots: Current Understanding and Future Perspectives

Author keywords

Degradome; Hormone; MicroRNA; MicroRNA target pair; Network; Next generation sequencing; Nutrition; PARE (parallel analysis of RNA ends); Root development; Small RNA; Stress

Indexed keywords


EID: 84870358808     PISSN: 21979731     EISSN: 21979758     Source Type: Book Series    
DOI: 10.1007/978-3-642-19454-2_17     Document Type: Chapter
Times cited : (5)

References (98)
  • 1
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • Allen E, Xie Z, Gustafson AM et al (2005) MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121:207–221
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3
  • 2
    • 33745960196 scopus 로고    scopus 로고
    • PHO2, microRNA399, and PHR1 define a phosphatesignaling pathway in plants
    • Bari R, Datt Pant B, Stitt M et al (2006) PHO2, microRNA399, and PHR1 define a phosphatesignaling pathway in plants. Plant Physiol 141:988–999
    • (2006) Plant Physiol , vol.141 , pp. 988-999
    • Bari, R.1    Datt Pant, B.2    Stitt, M.3
  • 3
    • 61449126060 scopus 로고    scopus 로고
    • Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses
    • Ben Amor B, Wirth S, Merchan F et al (2009) Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses. Genome Res 19:57–69
    • (2009) Genome Res , vol.19 , pp. 57-69
    • Ben Amor, B.1    Wirth, S.2    Merchan, F.3
  • 4
    • 0034676295 scopus 로고    scopus 로고
    • Root development
    • Benfey PN, Scheres B (2000) Root development. Curr Biol 10:R813–R815
    • (2000) Curr Biol , vol.10 , pp. R813-R815
    • Benfey, P.N.1    Scheres, B.2
  • 5
    • 77950410675 scopus 로고    scopus 로고
    • Getting to the root of plant biology: Impact of the Arabidopsis genome sequence on root research
    • Benfey PN, Bennett M, Schiefelbein J (2010) Getting to the root of plant biology: impact of the Arabidopsis genome sequence on root research. Plant J 61:992–1000
    • (2010) Plant J , vol.61 , pp. 992-1000
    • Benfey, P.N.1    Bennett, M.2    Schiefelbein, J.3
  • 6
    • 4444257009 scopus 로고    scopus 로고
    • Network building: Transcriptional circuits in the root
    • Birnbaum K, Benfey PN (2004) Network building: transcriptional circuits in the root. Curr Opin Plant Biol 7:582–588
    • (2004) Curr Opin Plant Biol , vol.7 , pp. 582-588
    • Birnbaum, K.1    Benfey, P.N.2
  • 7
    • 44349155320 scopus 로고    scopus 로고
    • MicroRNA166 controls root and nodule development in Medicago truncatula
    • Boualem A, Laporte P, Jovanovic M et al (2008) MicroRNA166 controls root and nodule development in Medicago truncatula. Plant J 54:876–887
    • (2008) Plant J , vol.54 , pp. 876-887
    • Boualem, A.1    Laporte, P.2    Jovanovic, M.3
  • 8
    • 77952679512 scopus 로고    scopus 로고
    • Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate
    • Carlsbecker A, Lee JY, Roberts CJ et al (2010) Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate. Nature 465:316–321
    • (2010) Nature , vol.465 , pp. 316-321
    • Carlsbecker, A.1    Lee, J.Y.2    Roberts, C.J.3
  • 9
    • 60149088848 scopus 로고    scopus 로고
    • Origins and mechanisms of miRNAs and siRNAs
    • Carthew RW, Sontheimer EJ (2009) Origins and mechanisms of miRNAs and siRNAs. Cell 136:642–655
    • (2009) Cell , vol.136 , pp. 642-655
    • Carthew, R.W.1    Sontheimer, E.J.2
  • 10
    • 0037662719 scopus 로고    scopus 로고
    • Dissecting Arabidopsis lateral root development
    • Casimiro I, Beeckman T, Graham N et al (2003) Dissecting Arabidopsis lateral root development. Trends Plant Sci 8:165–171
    • (2003) Trends Plant Sci , vol.8 , pp. 165-171
    • Casimiro, I.1    Beeckman, T.2    Graham, N.3
  • 11
    • 70350227275 scopus 로고    scopus 로고
    • Small RNAs and their roles in plant development
    • Chen X (2009) Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol 25:21–44
    • (2009) Annu Rev Cell Dev Biol , vol.25 , pp. 21-44
    • Chen, X.1
  • 12
    • 77952974797 scopus 로고    scopus 로고
    • Methodological framework for functional characterization of plant microRNAs
    • Chen M, Meng Y, Mao C et al (2010) Methodological framework for functional characterization of plant microRNAs. J Exp Bot 61:2271–2280
    • (2010) J Exp Bot , vol.61 , pp. 2271-2280
    • Chen, M.1    Meng, Y.2    Mao, C.3
  • 13
    • 34547510962 scopus 로고    scopus 로고
    • Target mimics modulate miRNAs
    • Chitwood DH, Timmermans MC (2007) Target mimics modulate miRNAs. Nat Genet 39:935–936
    • (2007) Nat Genet , vol.39 , pp. 935-936
    • Chitwood, D.H.1    Timmermans, M.C.2
  • 14
    • 77950613366 scopus 로고    scopus 로고
    • Genetic control of root development in rice, the model cereal
    • Coudert Y, Perin C, Courtois B et al (2010) Genetic control of root development in rice, the model cereal. Trends Plant Sci 15:219–226
    • (2010) Trends Plant Sci , vol.15 , pp. 219-226
    • Coudert, Y.1    Perin, C.2    Courtois, B.3
  • 15
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: A sequence logo generator
    • Crooks GE, Hon G, Chandonia JM et al (2004) WebLogo: a sequence logo generator. Genome Res 14:1188–1190
    • (2004) Genome Res , vol.14 , pp. 1188-1190
    • Crooks, G.E.1    Hon, G.2    Chandonia, J.M.3
  • 16
    • 34848831163 scopus 로고    scopus 로고
    • Root system architecture: Opportunities and constraints for genetic improvement of crops
    • de Dorlodot S, Forster B, Pages L et al (2007) Root system architecture: opportunities and constraints for genetic improvement of crops. Trends Plant Sci 12:474–481
    • (2007) Trends Plant Sci , vol.12 , pp. 474-481
    • de Dorlodot, S.1    Forster, B.2    Pages, L.3
  • 17
    • 38649097204 scopus 로고    scopus 로고
    • Root branching responses to phosphate and nitrate
    • Desnos T (2008) Root branching responses to phosphate and nitrate. Curr Opin Plant Biol 11:82–87
    • (2008) Curr Opin Plant Biol , vol.11 , pp. 82-87
    • Desnos, T.1
  • 18
    • 57749199958 scopus 로고    scopus 로고
    • Differential expression of miRNAs in response to salt stress in maize roots
    • Ding D, Zhang L, Wang H et al (2009) Differential expression of miRNAs in response to salt stress in maize roots. Ann Bot 103:29–38
    • (2009) Ann Bot , vol.103 , pp. 29-38
    • Ding, D.1    Zhang, L.2    Wang, H.3
  • 19
    • 65349094759 scopus 로고    scopus 로고
    • Computational and analytical framework for small RNA profiling by high-throughput sequencing
    • Fahlgren N, Sullivan CM, Kasschau KD et al (2009) Computational and analytical framework for small RNA profiling by high-throughput sequencing. RNA 15:992–1002
    • (2009) RNA , vol.15 , pp. 992-1002
    • Fahlgren, N.1    Sullivan, C.M.2    Kasschau, K.D.3
  • 20
    • 34547497309 scopus 로고    scopus 로고
    • Target mimicry provides a new mechanism for regulation of microRNA activity
    • Franco-Zorrilla JM, Valli A, Todesco M et al (2007) Target mimicry provides a new mechanism for regulation of microRNA activity. Nat Genet 39:1033–1037
    • (2007) Nat Genet , vol.39 , pp. 1033-1037
    • Franco-Zorrilla, J.M.1    Valli, A.2    Todesco, M.3
  • 21
    • 27844526222 scopus 로고    scopus 로고
    • A miRNA involved in phosphate-starvation response in Arabidopsis
    • Fujii H, Chiou TJ, Lin SI et al (2005) A miRNA involved in phosphate-starvation response in Arabidopsis. Curr Biol 15:2038–2043
    • (2005) Curr Biol , vol.15 , pp. 2038-2043
    • Fujii, H.1    Chiou, T.J.2    Lin, S.I.3
  • 22
    • 49449118943 scopus 로고    scopus 로고
    • Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
    • German MA, Pillay M, Jeong DH et al (2008) Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat Biotechnol 26:941–946
    • (2008) Nat Biotechnol , vol.26 , pp. 941-946
    • German, M.A.1    Pillay, M.2    Jeong, D.H.3
  • 23
    • 38649096571 scopus 로고    scopus 로고
    • Cell-specific nitrogen responses mediate developmental plasticity
    • Gifford ML, Dean A, Gutierrez RA et al (2008) Cell-specific nitrogen responses mediate developmental plasticity. Proc Natl Acad Sci USA 105:803–808
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 803-808
    • Gifford, M.L.1    Dean, A.2    Gutierrez, R.A.3
  • 24
    • 0034141770 scopus 로고    scopus 로고
    • Through form to function: Root hair development and nutrient uptake
    • Gilroy S, Jones DL (2000) Through form to function: root hair development and nutrient uptake. Trends Plant Sci 5:56–60
    • (2000) Trends Plant Sci , vol.5 , pp. 56-60
    • Gilroy, S.1    Jones, D.L.2
  • 25
    • 66949114581 scopus 로고    scopus 로고
    • Root uptake regulation: A central process for NPS homeostasis in plants
    • Gojon A, Nacry P, Davidian JC (2009) Root uptake regulation: a central process for NPS homeostasis in plants. Curr Opin Plant Biol 12:328–338
    • (2009) Curr Opin Plant Biol , vol.12 , pp. 328-338
    • Gojon, A.1    Nacry, P.2    Davidian, J.C.3
  • 26
    • 33644750115 scopus 로고    scopus 로고
    • miRBase: MicroRNA sequences, targets and gene nomenclature
    • Griffiths-Jones S, Grocock RJ, van Dongen S et al (2006) miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 34:D140–D144
    • (2006) Nucleic Acids Res , vol.34 , pp. D140-D144
    • Griffiths-Jones, S.1    Grocock, R.J.2    van Dongen, S.3
  • 27
    • 69949115080 scopus 로고    scopus 로고
    • Repression of apical homeobox genes is required for embryonic root development in Arabidopsis
    • Grigg SP, Galinha C, Kornet N et al (2009) Repression of apical homeobox genes is required for embryonic root development in Arabidopsis. Curr Biol 19:1485–1490
    • (2009) Curr Biol , vol.19 , pp. 1485-1490
    • Grigg, S.P.1    Galinha, C.2    Kornet, N.3
  • 28
    • 24944510549 scopus 로고    scopus 로고
    • MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development
    • Guo HS, Xie Q, Fei JF et al (2005) MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development. Plant Cell 17:1376–1386
    • (2005) Plant Cell , vol.17 , pp. 1376-1386
    • Guo, H.S.1    Xie, Q.2    Fei, J.F.3
  • 29
    • 38549132439 scopus 로고    scopus 로고
    • PlantTFDB: A comprehensive plant transcription factor database
    • Guo AY, Chen X, Gao G et al (2008) PlantTFDB: a comprehensive plant transcription factor database. Nucleic Acids Res 36:D966–D969
    • (2008) Nucleic Acids Res , vol.36 , pp. D966-D969
    • Guo, A.Y.1    Chen, X.2    Gao, G.3
  • 30
    • 72049120376 scopus 로고    scopus 로고
    • Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and MicroRNA abundance
    • Gutierrez L, Bussell JD, Pacurar DI et al (2009) Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and MicroRNA abundance. Plant Cell 21:3119–3132
    • (2009) Plant Cell , vol.21 , pp. 3119-3132
    • Gutierrez, L.1    Bussell, J.D.2    Pacurar, D.I.3
  • 31
    • 29544449515 scopus 로고    scopus 로고
    • Root development – branching into novel spheres
    • Hardtke CS (2006) Root development – branching into novel spheres. Curr Opin Plant Biol 9:66–71
    • (2006) Curr Opin Plant Biol , vol.9 , pp. 66-71
    • Hardtke, C.S.1
  • 32
    • 0031811991 scopus 로고    scopus 로고
    • PLACE: A database of plant cis-acting regulatory DNA elements
    • Higo K, Ugawa Y, Iwamoto M et al (1998) PLACE: a database of plant cis-acting regulatory DNA elements. Nucleic Acids Res 26:358–359
    • (1998) Nucleic Acids Res , vol.26 , pp. 358-359
    • Higo, K.1    Ugawa, Y.2    Iwamoto, M.3
  • 33
    • 0032918558 scopus 로고    scopus 로고
    • Plant cis-acting regulatory DNA elements (PLACE) database: 1999
    • Higo K, Ugawa Y, Iwamoto M et al (1999) Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res 27:297–300
    • (1999) Nucleic Acids Res , vol.27 , pp. 297-300
    • Higo, K.1    Ugawa, Y.2    Iwamoto, M.3
  • 34
    • 62349095516 scopus 로고    scopus 로고
    • Genetic and genomic dissection of maize root development and architecture
    • Hochholdinger F, Tuberosa R (2009) Genetic and genomic dissection of maize root development and architecture. Curr Opin Plant Biol 12:172–177
    • (2009) Curr Opin Plant Biol , vol.12 , pp. 172-177
    • Hochholdinger, F.1    Tuberosa, R.2
  • 35
    • 38649111638 scopus 로고    scopus 로고
    • Conserved and diverse mechanisms in root development
    • Hochholdinger F, Zimmermann R (2008) Conserved and diverse mechanisms in root development. Curr Opin Plant Biol 11:70–74
    • (2008) Curr Opin Plant Biol , vol.11 , pp. 70-74
    • Hochholdinger, F.1    Zimmermann, R.2
  • 36
    • 71049136041 scopus 로고    scopus 로고
    • Uncovering small RNA-mediated responses to phosphatedeficiency in Arabidopsis by deep sequencing
    • Hsieh LC, Lin SI, Shih AC et al (2009) Uncovering small RNA-mediated responses to phosphatedeficiency in Arabidopsis by deep sequencing. Plant Physiol 151:2120–2132
    • (2009) Plant Physiol , vol.151 , pp. 2120-2132
    • Hsieh, L.C.1    Lin, S.I.2    Shih, A.C.3
  • 37
    • 27744565583 scopus 로고    scopus 로고
    • Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling
    • Inukai Y, Sakamoto T, Ueguchi-Tanaka M et al (2005) Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling. Plant Cell 17:1387–1396
    • (2005) Plant Cell , vol.17 , pp. 1387-1396
    • Inukai, Y.1    Sakamoto, T.2    Ueguchi-Tanaka, M.3
  • 38
    • 44949213903 scopus 로고    scopus 로고
    • A genetic regulatory network in the development of trichomes and root hairs
    • Ishida T, Kurata T, Okada K et al (2008) A genetic regulatory network in the development of trichomes and root hairs. Annu Rev Plant Biol 59:365–386
    • (2008) Annu Rev Plant Biol , vol.59 , pp. 365-386
    • Ishida, T.1    Kurata, T.2    Okada, K.3
  • 40
    • 33846120020 scopus 로고    scopus 로고
    • CSRDB: A small RNA integrated database and browser resource for cereals
    • Johnson C, Bowman L, Adai AT et al (2007) CSRDB: a small RNA integrated database and browser resource for cereals. Nucleic Acids Res 35:D829–D833
    • (2007) Nucleic Acids Res , vol.35 , pp. D829-D833
    • Johnson, C.1    Bowman, L.2    Adai, A.T.3
  • 41
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    • Jones-Rhoades MW, Bartel DP (2004) Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 14:787–799
    • (2004) Mol Cell , vol.14 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 43
    • 75149175703 scopus 로고    scopus 로고
    • Prediction of novel miRNAs and associated target genes in Glycine max
    • Suppl 1
    • Joshi T, Yan Z, Libault M (2010) Prediction of novel miRNAs and associated target genes in Glycine max. BMC Bioinformatics 11(Suppl 1):S14
    • (2010) BMC Bioinformatics , vol.11 , pp. S14
    • Joshi, T.1    Yan, Z.2    Libault, M.3
  • 44
    • 78650520209 scopus 로고    scopus 로고
    • Regulation of barley miRNAs upon dehydration stress correlated with target gene expression
    • Kantar M, Unver T, Budak H (2010) Regulation of barley miRNAs upon dehydration stress correlated with target gene expression. Funct Integr Genomics 10:493–507
    • (2010) Funct Integr Genomics , vol.10 , pp. 493-507
    • Kantar, M.1    Unver, T.2    Budak, H.3
  • 45
    • 58349096093 scopus 로고    scopus 로고
    • Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types
    • Kawashima CG, Yoshimoto N, Maruyama-Nakashita A et al (2009) Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. Plant J 57:313–321
    • (2009) Plant J , vol.57 , pp. 313-321
    • Kawashima, C.G.1    Yoshimoto, N.2    Maruyama-Nakashita, A.3
  • 46
    • 8144225486 scopus 로고    scopus 로고
    • MicroRNA genes are transcribed by RNA polymerase II
    • Lee Y, Kim M, Han J et al (2004) MicroRNA genes are transcribed by RNA polymerase II. EMBO J 23:4051–4060
    • (2004) EMBO J , vol.23 , pp. 4051-4060
    • Lee, Y.1    Kim, M.2    Han, J.3
  • 47
    • 0036085047 scopus 로고    scopus 로고
    • PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
    • Lescot M, Dehais P, Thijs G et al (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 30:325–327
    • (2002) Nucleic Acids Res , vol.30 , pp. 325-327
    • Lescot, M.1    Dehais, P.2    Thijs, G.3
  • 48
    • 77955677603 scopus 로고    scopus 로고
    • Misexpression of miR482, miR1512, and miR1515 increases soybean nodulation
    • Li H, Deng Y, Wu T et al (2010) Misexpression of miR482, miR1512, and miR1515 increases soybean nodulation. Plant Physiol 153:1759–1770
    • (2010) Plant Physiol , vol.153 , pp. 1759-1770
    • Li, H.1    Deng, Y.2    Wu, T.3
  • 49
    • 48249157464 scopus 로고    scopus 로고
    • Regulatory network of microRNA399 and PHO2 by systemic signaling
    • Lin SI, Chiang SF, Lin WY et al (2008) Regulatory network of microRNA399 and PHO2 by systemic signaling. Plant Physiol 147:732–746
    • (2008) Plant Physiol , vol.147 , pp. 732-746
    • Lin, S.I.1    Chiang, S.F.2    Lin, W.Y.3
  • 50
    • 66949151075 scopus 로고    scopus 로고
    • The long-distance signaling of mineral macronutrients
    • Liu TY, Chang CY, Chiou TJ (2009) The long-distance signaling of mineral macronutrients. Curr Opin Plant Biol 12:312–319
    • (2009) Curr Opin Plant Biol , vol.12 , pp. 312-319
    • Liu, T.Y.1    Chang, C.Y.2    Chiou, T.J.3
  • 52
    • 2942697259 scopus 로고    scopus 로고
    • MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs
    • Mallory AC, Dugas DV, Bartel DP et al (2004) MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr Biol 14:1035–1046
    • (2004) Curr Biol , vol.14 , pp. 1035-1046
    • Mallory, A.C.1    Dugas, D.V.2    Bartel, D.P.3
  • 53
    • 24944493388 scopus 로고    scopus 로고
    • MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes
    • Mallory AC, Bartel DP, Bartel B (2005) MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell 17:1360–1375
    • (2005) Plant Cell , vol.17 , pp. 1360-1375
    • Mallory, A.C.1    Bartel, D.P.2    Bartel, B.3
  • 54
    • 0034502619 scopus 로고    scopus 로고
    • Influence of cytokinins on the expression of phosphate starvation responsive genes in Arabidopsis
    • Martin AC, del Pozo JC, Iglesias J et al (2000) Influence of cytokinins on the expression of phosphate starvation responsive genes in Arabidopsis. Plant J 24:559–567
    • (2000) Plant J , vol.24 , pp. 559-567
    • Martin, A.C.1    Del Pozo, J.C.2    Iglesias, J.3
  • 55
    • 73949114608 scopus 로고    scopus 로고
    • Genome-wide survey of rice microRNAs and microRNAtarget pairs in the root of a novel auxin-resistant mutant
    • Meng Y, Huang F, Shi Q et al (2009) Genome-wide survey of rice microRNAs and microRNAtarget pairs in the root of a novel auxin-resistant mutant. Planta 230:883–898
    • (2009) Planta , vol.230 , pp. 883-898
    • Meng, Y.1    Huang, F.2    Shi, Q.3
  • 56
    • 78651327631 scopus 로고    scopus 로고
    • PmiRKB: A plant microRNA knowledge base
    • Meng Y, Gou L, Chen D et al (2010a) PmiRKB: a plant microRNA knowledge base. Nucleic Acids Res. doi:10.1093/nar/gkq721
    • (2010) Nucleic Acids Res
    • Meng, Y.1    Gou, L.2    Chen, D.3
  • 57
    • 77949264252 scopus 로고    scopus 로고
    • MicroRNA-mediated signaling involved in plant root development
    • Meng Y, Ma X, Chen D et al (2010b) MicroRNA-mediated signaling involved in plant root development. Biochem Biophys Res Commun 393:345–349
    • (2010) Biochem Biophys Res Commun , vol.393 , pp. 345-349
    • Meng, Y.1    Ma, X.2    Chen, D.3
  • 58
    • 70450200500 scopus 로고    scopus 로고
    • The exploring root – root growth responses to local environmental conditions
    • Monshausen GB, Gilroy S (2009) The exploring root – root growth responses to local environmental conditions. Curr Opin Plant Biol 12:766–772
    • (2009) Curr Opin Plant Biol , vol.12 , pp. 766-772
    • Monshausen, G.B.1    Gilroy, S.2
  • 59
    • 16544369812 scopus 로고    scopus 로고
    • Transcription factor networks. Pathways to the knowledge of root development
    • Montiel G, Gantet P, Jay-Allemand C et al (2004) Transcription factor networks. Pathways to the knowledge of root development. Plant Physiol 136:3478–3485
    • (2004) Plant Physiol , vol.136 , pp. 3478-3485
    • Montiel, G.1    Gantet, P.2    Jay-Allemand, C.3
  • 60
    • 53649088131 scopus 로고    scopus 로고
    • Applications of next-generation sequencing technologies in functional genomics
    • Morozova O, Marra MA (2008) Applications of next-generation sequencing technologies in functional genomics. Genomics 92:255–264
    • (2008) Genomics , vol.92 , pp. 255-264
    • Morozova, O.1    Marra, M.A.2
  • 61
    • 33644876658 scopus 로고    scopus 로고
    • Plant MPSS databases: Signature-based transcriptional resources for analyses of mRNA and small RNA
    • Nakano M, Nobuta K, Vemaraju K et al (2006) Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA. Nucleic Acids Res 34:D731–D735
    • (2006) Nucleic Acids Res , vol.34 , pp. D731-D735
    • Nakano, M.1    Nobuta, K.2    Vemaraju, K.3
  • 62
    • 33747886248 scopus 로고    scopus 로고
    • Long-distance signaling to control root nodule number
    • Oka-Kira E, Kawaguchi M (2006) Long-distance signaling to control root nodule number. Curr Opin Plant Biol 9:496–502
    • (2006) Curr Opin Plant Biol , vol.9 , pp. 496-502
    • Oka-Kira, E.1    Kawaguchi, M.2
  • 63
    • 34250842583 scopus 로고    scopus 로고
    • Hidden branches: Developments in root system architecture
    • Osmont KS, Sibout R, Hardtke CS (2007) Hidden branches: developments in root system architecture. Annu Rev Plant Biol 58:93–113
    • (2007) Annu Rev Plant Biol , vol.58 , pp. 93-113
    • Osmont, K.S.1    Sibout, R.2    Hardtke, C.S.3
  • 64
    • 41849109875 scopus 로고    scopus 로고
    • MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis
    • Pant BD, Buhtz A, Kehr J et al (2008) MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis. Plant J 53:731–738
    • (2008) Plant J , vol.53 , pp. 731-738
    • Pant, B.D.1    Buhtz, A.2    Kehr, J.3
  • 65
    • 77953489252 scopus 로고    scopus 로고
    • Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    • Pantaleo V, Szittya G, Moxon S et al (2010) Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. Plant J 62:960–976
    • (2010) Plant J , vol.62 , pp. 960-976
    • Pantaleo, V.1    Szittya, G.2    Moxon, S.3
  • 66
    • 67649756366 scopus 로고    scopus 로고
    • Arabidopsis lateral root development: An emerging story
    • Peret B, De Rybel B, Casimiro I et al (2009) Arabidopsis lateral root development: an emerging story. Trends Plant Sci 14:399–408
    • (2009) Trends Plant Sci , vol.14 , pp. 399-408
    • Peret, B.1    de Rybel, B.2    Casimiro, I.3
  • 67
    • 34447550259 scopus 로고    scopus 로고
    • The role of small RNAs in abiotic stress
    • Phillips JR, Dalmay T, Bartels D (2007) The role of small RNAs in abiotic stress. FEBS lett 581:3592–3597
    • (2007) FEBS Lett , vol.581 , pp. 3592-3597
    • Phillips, J.R.1    Dalmay, T.2    Bartels, D.3
  • 69
    • 0035881704 scopus 로고    scopus 로고
    • A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae
    • Rubio V, Linhares F, Solano R et al (2001) A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae. Genes Dev 15:2122–2133
    • (2001) Genes Dev , vol.15 , pp. 2122-2133
    • Rubio, V.1    Linhares, F.2    Solano, R.3
  • 70
    • 0031975589 scopus 로고    scopus 로고
    • The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast grr1p
    • Ruegger M, Dewey E, Gray WM et al (1998) The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast grr1p. Genes Dev 12:198–207
    • (1998) Genes Dev , vol.12 , pp. 198-207
    • Ruegger, M.1    Dewey, E.2    Gray, W.M.3
  • 71
    • 2442478428 scopus 로고    scopus 로고
    • New signalling molecules regulating root hair tip growth
    • Samaj J, Baluska F, Menzel D (2004) New signalling molecules regulating root hair tip growth. Trends Plant Sci 9:217–220
    • (2004) Trends Plant Sci , vol.9 , pp. 217-220
    • Samaj, J.1    Baluska, F.2    Menzel, D.3
  • 72
    • 0030869486 scopus 로고    scopus 로고
    • Cell signaling in root development
    • Scheres B (1997) Cell signaling in root development. Curr Opin Genet Dev 7:501–506
    • (1997) Curr Opin Genet Dev , vol.7 , pp. 501-506
    • Scheres, B.1
  • 73
    • 77952723088 scopus 로고    scopus 로고
    • Developmental biology: Roots respond to an inner calling
    • Scheres B (2010) Developmental biology: roots respond to an inner calling. Nature 465:299–300
    • (2010) Nature , vol.465 , pp. 299-300
    • Scheres, B.1
  • 74
    • 0034527508 scopus 로고    scopus 로고
    • Constructing a plant cell. The genetic control of root hair development
    • Schiefelbein JW (2000) Constructing a plant cell. The genetic control of root hair development. Plant Physiol 124:1525–1531
    • (2000) Plant Physiol , vol.124 , pp. 1525-1531
    • Schiefelbein, J.W.1
  • 76
    • 70350645175 scopus 로고    scopus 로고
    • MicroRNAs in the rhizobia legume symbiosis
    • Simon SA, Meyers BC, Sherrier DJ (2009a) MicroRNAs in the rhizobia legume symbiosis. Plant Physiol 151:1002–1008
    • (2009) Plant Physiol , vol.151 , pp. 1002-1008
    • Simon, S.A.1    Meyers, B.C.2    Sherrier, D.J.3
  • 77
    • 67651033745 scopus 로고    scopus 로고
    • Short-read sequencing technologies for transcriptional analyses
    • Simon SA, Zhai J, Nandety RS et al (2009b) Short-read sequencing technologies for transcriptional analyses. Annu Rev Plant Biol 60:305–333
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 305-333
    • Simon, S.A.1    Zhai, J.2    Nandety, R.S.3
  • 78
    • 0034946356 scopus 로고    scopus 로고
    • Genetics and genomics of root symbiosis
    • Stougaard J (2001) Genetics and genomics of root symbiosis. Curr Opin Plant Biol 4:328–335
    • (2001) Curr Opin Plant Biol , vol.4 , pp. 328-335
    • Stougaard, J.1
  • 79
    • 42549136362 scopus 로고    scopus 로고
    • Novel and nodulation-regulated microRNAs in soybean roots
    • Subramanian S, Fu Y, Sunkar R et al (2008) Novel and nodulation-regulated microRNAs in soybean roots. BMC Genomics 9:160
    • (2008) BMC Genomics , vol.9 , pp. 160
    • Subramanian, S.1    Fu, Y.2    Sunkar, R.3
  • 80
    • 4043074968 scopus 로고    scopus 로고
    • Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    • Sunkar R, Zhu JK (2004) Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 16:2001–2019
    • (2004) Plant Cell , vol.16 , pp. 2001-2019
    • Sunkar, R.1    Zhu, J.K.2
  • 81
    • 22144464033 scopus 로고    scopus 로고
    • Cloning and characterization of microRNAs from rice
    • Sunkar R, Girke T, Jain PK et al (2005) Cloning and characterization of microRNAs from rice. Plant Cell 17:1397–1411
    • (2005) Plant Cell , vol.17 , pp. 1397-1411
    • Sunkar, R.1    Girke, T.2    Jain, P.K.3
  • 82
    • 33747505089 scopus 로고    scopus 로고
    • Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance
    • Sunkar R, Kapoor A, Zhu JK (2006) Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 18:2051–2065
    • (2006) Plant Cell , vol.18 , pp. 2051-2065
    • Sunkar, R.1    Kapoor, A.2    Zhu, J.K.3
  • 83
    • 55949135215 scopus 로고    scopus 로고
    • Essential role of MYB transcription factor: PvPHR1 and microRNA: PvmiR399 in phosphorus-deficiency signalling in common bean roots
    • Valdes-Lopez O, Arenas-Huertero C, Ramirez M et al (2008) Essential role of MYB transcription factor: PvPHR1 and microRNA: PvmiR399 in phosphorus-deficiency signalling in common bean roots. Plant Cell Environ 31:1834–1843
    • (2008) Plant Cell Environ , vol.31 , pp. 1834-1843
    • Valdes-Lopez, O.1    Arenas-Huertero, C.2    Ramirez, M.3
  • 84
    • 77749264610 scopus 로고    scopus 로고
    • Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana
    • Vidal EA, Araus V, Lu C et al (2010) Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana. Proc Natl Acad Sci USA 107: 4477–4482
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 4477-4482
    • Vidal, E.A.1    Araus, V.2    Lu, C.3
  • 85
    • 60149086351 scopus 로고    scopus 로고
    • Origin, biogenesis, and activity of plant microRNAs
    • Voinnet O (2009) Origin, biogenesis, and activity of plant microRNAs. Cell 136:669–687
    • (2009) Cell , vol.136 , pp. 669-687
    • Voinnet, O.1
  • 86
    • 27744596243 scopus 로고    scopus 로고
    • Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis
    • Wang JW, Wang LJ, Mao YB et al (2005) Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis. Plant Cell 17:2204–2216
    • (2005) Plant Cell , vol.17 , pp. 2204-2216
    • Wang, J.W.1    Wang, L.J.2    Mao, Y.B.3
  • 87
    • 57849145093 scopus 로고    scopus 로고
    • Identification and expression analysis of miRNAs from nitrogenfixing soybean nodules
    • Wang Y, Li P, Cao X et al (2009) Identification and expression analysis of miRNAs from nitrogenfixing soybean nodules. Biochem Biophys Res Commun 378:799–803
    • (2009) Biochem Biophys Res Commun , vol.378 , pp. 799-803
    • Wang, Y.1    Li, P.2    Cao, X.3
  • 88
    • 22144433672 scopus 로고    scopus 로고
    • A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes
    • Williams L, Carles CC, Osmont KS et al (2005) A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes. Proc Natl Acad Sci USA 102:9703–9708
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 9703-9708
    • Williams, L.1    Carles, C.C.2    Osmont, K.S.3
  • 89
    • 0033635955 scopus 로고    scopus 로고
    • Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development
    • Xie Q, Frugis G, Colgan D et al (2000) Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev 14:3024–3036
    • (2000) Genes Dev , vol.14 , pp. 3024-3036
    • Xie, Q.1    Frugis, G.2    Colgan, D.3
  • 90
    • 34447528701 scopus 로고    scopus 로고
    • Regulation of copper homeostasis by microRNA in Arabidopsis
    • Yamasaki H, Abdel-Ghany SE, Cohu CM et al (2007) Regulation of copper homeostasis by microRNA in Arabidopsis. J Biol Chem 282:16369–16378
    • (2007) J Biol Chem , vol.282 , pp. 16369-16378
    • Yamasaki, H.1    Abdel-Ghany, S.E.2    Cohu, C.M.3
  • 91
    • 33645814822 scopus 로고    scopus 로고
    • Evidence of an auxin signal pathway, microRNA167 ARF8-GH3, and its response to exogenous auxin in cultured rice cells
    • Yang JH, Han SJ, Yoon EK et al (2006) Evidence of an auxin signal pathway, microRNA167 ARF8-GH3, and its response to exogenous auxin in cultured rice cells. Nucleic Acids Res 34:1892–1899
    • (2006) Nucleic Acids Res , vol.34 , pp. 1892-1899
    • Yang, J.H.1    Han, S.J.2    Yoon, E.K.3
  • 92
    • 77950365831 scopus 로고    scopus 로고
    • Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development
    • Yoon EK, Yang JH, Lim J et al (2009) Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development. Nucleic Acids Res. doi:10.1093/nar/gkp1128
    • (2009) Nucleic Acids Res
    • Yoon, E.K.1    Yang, J.H.2    Lim, J.3
  • 93
    • 23144458275 scopus 로고    scopus 로고
    • miRU: An automated plant miRNA target prediction server
    • Zhang Y (2005) miRU: an automated plant miRNA target prediction server. Nucleic Acids Res 33:W701–W704
    • (2005) Nucleic Acids Res , vol.33 , pp. W701-W704
    • Zhang, Y.1
  • 94
    • 33745156778 scopus 로고    scopus 로고
    • Identification of 188 conserved maize microRNAs and their targets
    • Zhang B, Pan X, Anderson TA (2006) Identification of 188 conserved maize microRNAs and their targets. FEBS Lett 580:3753–3762
    • (2006) FEBS Lett , vol.580 , pp. 3753-3762
    • Zhang, B.1    Pan, X.2    Anderson, T.A.3
  • 95
    • 34250818778 scopus 로고    scopus 로고
    • Identification of cotton microRNAs and their targets
    • Zhang B, Wang Q, Wang K et al (2007) Identification of cotton microRNAs and their targets. Gene 397:26–37
    • (2007) Gene , vol.397 , pp. 26-37
    • Zhang, B.1    Wang, Q.2    Wang, K.3
  • 96
    • 52449125294 scopus 로고    scopus 로고
    • Submergence-responsive microRNAs are potentially involved in the regulation of morphological and metabolic adaptations in maize root cells
    • Zhang Z, Wei L, Zou X et al (2008) Submergence-responsive microRNAs are potentially involved in the regulation of morphological and metabolic adaptations in maize root cells. Ann Bot 102:509–519
    • (2008) Ann Bot , vol.102 , pp. 509-519
    • Zhang, Z.1    Wei, L.2    Zou, X.3
  • 97
    • 57749175110 scopus 로고    scopus 로고
    • Computational identification of 48 potato microRNAs and their targets
    • Zhang W, Luo Y, Gong X et al (2009) Computational identification of 48 potato microRNAs and their targets. Comput Biol Chem 33:84–93
    • (2009) Comput Biol Chem , vol.33 , pp. 84-93
    • Zhang, W.1    Luo, Y.2    Gong, X.3
  • 98
    • 33846537402 scopus 로고    scopus 로고
    • Identification of drought-induced microRNAs in rice
    • Zhao B, Liang R, Ge L et al (2007) Identification of drought-induced microRNAs in rice. Biochem Biophys Res Commun 354:585–590
    • (2007) Biochem Biophys Res Commun , vol.354 , pp. 585-590
    • Zhao, B.1    Liang, R.2    Ge, L.3


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