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66949149147
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Physiological functions of mineral macronutrients
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this issue
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Maathuis FJM: Physiological functions of mineral macronutrients. Curr Opin Plant Biol 2009, this issue.
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Curr Opin Plant Biol
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Maathuis, F.J.M.1
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34347262497
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Nutrient sensing and signalling: NPKS
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An excellent review on the various mechanisms involved in the response of the plants to nutrient deficiency, with a focus on nitrogen, phosphorus, potassium and sulfate.
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Schatchtman D.P., and Shin R. Nutrient sensing and signalling: NPKS. Annu Rev Plant Biol 58 (2007) 47-69. An excellent review on the various mechanisms involved in the response of the plants to nutrient deficiency, with a focus on nitrogen, phosphorus, potassium and sulfate.
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Annu Rev Plant Biol
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Schatchtman, D.P.1
Shin, R.2
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Freeways in the plant: Transporters for N, P and S and their regulation
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this issue
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Miller AJ, Shen Q, Xu G: Freeways in the plant: transporters for N, P and S and their regulation. Curr Opin Plant Biol 2009, this issue.
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Curr Opin Plant Biol
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Miller, A.J.1
Shen, Q.2
Xu, G.3
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0035793452
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An Arabidopsis T-DNA mutant affected in nrt2 genes is impaired in nitrate uptake
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Filleur S., Dorbe M.F., Cerezo M., Orsel M., Granier F., Gojon A., and Daniel-Vedele F. An Arabidopsis T-DNA mutant affected in nrt2 genes is impaired in nitrate uptake. FEBS Lett 489 (2001) 200-224
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FEBS Lett
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Dissection of the AtNRT2.1:AtNRT2.2 inducible high-affinity nitrate transporter gene cluster
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Li W., Wang Y., Okamoto M., Crawford N.M., Siddiqi Y., and Glass A.D.M. Dissection of the AtNRT2.1:AtNRT2.2 inducible high-affinity nitrate transporter gene cluster. Plant Physiol 143 (2007) 425-433
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Plant Physiol
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Li, W.1
Wang, Y.2
Okamoto, M.3
Crawford, N.M.4
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Glass, A.D.M.6
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6
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34848869768
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Identification of a 150 bp cis-acting element of the AtNRT2.1 promoter involved in the regulation of gene expression by the N and C status of the plant
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Girin T., Lejay L., Wirth J., Widiez T., Palenchar P.M., Nazoa P., Touraine B., Gojon A., and Lepetit M. Identification of a 150 bp cis-acting element of the AtNRT2.1 promoter involved in the regulation of gene expression by the N and C status of the plant. Plant Cell Environ 30 (2007) 1366-1380
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Constitutive expression of a putative high-affinity nitrate transporter in Nicotiana plumbaginifolia: evidence for post-transcriptional regulation by a reduced nitrogen source
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Fraisier V., Gojon A., Tillard P., and Daniel-Vedele F. Constitutive expression of a putative high-affinity nitrate transporter in Nicotiana plumbaginifolia: evidence for post-transcriptional regulation by a reduced nitrogen source. Plant J 23 (2000) 489-496
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34548157986
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Regulation of root nitrate uptake at the NRT2.1 protein level in Arabidopsis thaliana
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Wirth J., Chopin F., Santoni V., Viennois G., Tillard P., Krapp A., Lejay L., Daniel-Vedele F., and Gojon A. Regulation of root nitrate uptake at the NRT2.1 protein level in Arabidopsis thaliana. J Biol Chem 282 (2007) 23541-23552
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Wirth, J.1
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Lejay, L.7
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57649213564
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Phosphorylation of the yeast nitrate transporter Ynt1 is essential for delivery to the plasma membrane during nitrogen limitation
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Navarro F.J., Martin Y., and Siverio J.M. Phosphorylation of the yeast nitrate transporter Ynt1 is essential for delivery to the plasma membrane during nitrogen limitation. J Biol Chem 283 (2008) 31208-31217
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J Biol Chem
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Navarro, F.J.1
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Siverio, J.M.3
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11
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35348820646
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The organization of high-affinity ammonium uptake in Arabidopsis roots depends on the spatial arrangement and biochemical properties of AMT1-type transporters
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The authors build a comprehensive model of the overall system for root ammonium uptake in Arabidopsis. This allows to delineate the respective contributions and specific roles of four AMT transporters in ensuring root ammonium acquisition under various nutritional conditions.
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Yuan L., Loqué D., Kojima S., Rauch S., Ishiyama K., Inoue E., Takahashi H., and von Wirén N. The organization of high-affinity ammonium uptake in Arabidopsis roots depends on the spatial arrangement and biochemical properties of AMT1-type transporters. Plant Cell 19 (2007) 2636-2652. The authors build a comprehensive model of the overall system for root ammonium uptake in Arabidopsis. This allows to delineate the respective contributions and specific roles of four AMT transporters in ensuring root ammonium acquisition under various nutritional conditions.
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(2007)
Plant Cell
, vol.19
, pp. 2636-2652
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Yuan, L.1
Loqué, D.2
Kojima, S.3
Rauch, S.4
Ishiyama, K.5
Inoue, E.6
Takahashi, H.7
von Wirén, N.8
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12
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33947155410
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A cytosolic trans-activation domain essential for ammonium uptake
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••], the authors describe a novel mechanism for fast regulation of AMT1 transporter gating. By combining functional analysis in yeast of mutated forms of the Arabidopsis AMT1.1 transporter with an AMT1.1 structural model, the authors propose that the C terminus of each AMT1.1 monomer interacts with the cytosolic loops of the neighbouring subunits, to induce conformational change resulting in the trans-inactivation of the whole trimer. This may allow fast shut-off of ammonium membrane transport under conditions where this ion can be toxic for the cell.
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••], the authors describe a novel mechanism for fast regulation of AMT1 transporter gating. By combining functional analysis in yeast of mutated forms of the Arabidopsis AMT1.1 transporter with an AMT1.1 structural model, the authors propose that the C terminus of each AMT1.1 monomer interacts with the cytosolic loops of the neighbouring subunits, to induce conformational change resulting in the trans-inactivation of the whole trimer. This may allow fast shut-off of ammonium membrane transport under conditions where this ion can be toxic for the cell.
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(2007)
Nature
, vol.446
, pp. 195-198
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Loqué, D.1
Lalonde, S.2
Looger, L.L.3
von Wirén, N.4
Frommer, W.B.5
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13
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34248144236
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+ transport by essential cross talk between AMT monomers through the carboxyl tails
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••] for AMT1.1, thus suggesting a general occurrence of this type of regulation for various AMTs.
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••] for AMT1.1, thus suggesting a general occurrence of this type of regulation for various AMTs.
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(2007)
Plant Physiol
, vol.143
, pp. 1651-1659
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Neuhäuser, B.1
Dynowski, M.2
Mayer, M.3
Ludewig, U.4
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14
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16544369956
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Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis
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Wang R., Tischner R., Gutiérrez R.A., Hoffman M., Xing X., Chen M., Coruzzi G., and Crawford N.M. Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. Plant Physiol 136 (2004) 2512-2522
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Plant Physiol
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Wang, R.1
Tischner, R.2
Gutiérrez, R.A.3
Hoffman, M.4
Xing, X.5
Chen, M.6
Coruzzi, G.7
Crawford, N.M.8
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15
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0037416191
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Switching between the two action modes of the dual-affinity nitrate transporter CHL1 by phosphorylation
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Liu K.H., and Tsay Y.F. Switching between the two action modes of the dual-affinity nitrate transporter CHL1 by phosphorylation. EMBO J 22 (2003) 1005-1013
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EMBO J
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Liu, K.H.1
Tsay, Y.F.2
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4544336507
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Transcript profiling in the chl1-5 mutant of Arabidopsis reveals a role of the nitrate transporter NRT1.1 in the regulation of another nitrate transporter, NRT2.1
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Muños S., Cazettes C., Fizames C., Gaymard F., Tillard P., Lepetit M., Lejay L., and Gojon A. Transcript profiling in the chl1-5 mutant of Arabidopsis reveals a role of the nitrate transporter NRT1.1 in the regulation of another nitrate transporter, NRT2.1. Plant Cell 16 (2004) 2433-2447
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Plant Cell
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Muños, S.1
Cazettes, C.2
Fizames, C.3
Gaymard, F.4
Tillard, P.5
Lepetit, M.6
Lejay, L.7
Gojon, A.8
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18
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58349088076
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AtCIPK8, a CBL-interacting protein kinase, regulates the low-affinity phase of the primary nitrate response
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•], this is the first report on the isolation of an intermediary component of nitrate signalling pathway responsible for nitrate regulation of gene expression.
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•], this is the first report on the isolation of an intermediary component of nitrate signalling pathway responsible for nitrate regulation of gene expression.
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(2009)
Plant J
, vol.57
, pp. 264-278
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Hu, H.C.1
Wang, Y.Y.2
Tsay, Y.F.3
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19
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58849097591
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The nodule inception-like protein 7 modulates nitrate sensing and metabolism in Arabidopsis
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A search for homologues of regulatory genes involved in N signalling in other species (NIN genes in legumes and NIT2 gene of C. reinhardtii) led to the identification of the NLP family in Arabidopsis. One member of this family, NLP7, is shown by the authors to control both nitrate assimilation and nitrate regulation of gene expression. Nuclear localization of NLP7 suggests a direct role in transcriptional regulation.
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Castaings L., Camargo A., Pocholle D., Gaudon V., Texier Y., Boutet-Mercey S., Taconnat L., Renou J.P., Daniel-Vedele F., Fernandez E., et al. The nodule inception-like protein 7 modulates nitrate sensing and metabolism in Arabidopsis. Plant J 57 (2009) 426-435. A search for homologues of regulatory genes involved in N signalling in other species (NIN genes in legumes and NIT2 gene of C. reinhardtii) led to the identification of the NLP family in Arabidopsis. One member of this family, NLP7, is shown by the authors to control both nitrate assimilation and nitrate regulation of gene expression. Nuclear localization of NLP7 suggests a direct role in transcriptional regulation.
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(2009)
Plant J
, vol.57
, pp. 426-435
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Castaings, L.1
Camargo, A.2
Pocholle, D.3
Gaudon, V.4
Texier, Y.5
Boutet-Mercey, S.6
Taconnat, L.7
Renou, J.P.8
Daniel-Vedele, F.9
Fernandez, E.10
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21
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42449106989
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Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1
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A pioneering systems biology approach, where modelling of regulatory gene networks from genomic data in Arabidopsis allowed to define a structured subnetwork that was validated by reverse genetics and ChIP assays. This is a nice proof of concept for this type of approach.
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Gutiérrez R.A., Stokes T.L., Thum K., Xu X., Obertello M., Katari M.S., Tanurdzic M., Dean A., Nero D.C., McClung C.R., and Coruzzi G.M. Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proc Natl Acad Sci U S A 105 (2008) 4939-4944. A pioneering systems biology approach, where modelling of regulatory gene networks from genomic data in Arabidopsis allowed to define a structured subnetwork that was validated by reverse genetics and ChIP assays. This is a nice proof of concept for this type of approach.
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(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4939-4944
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Gutiérrez, R.A.1
Stokes, T.L.2
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Xu, X.4
Obertello, M.5
Katari, M.S.6
Tanurdzic, M.7
Dean, A.8
Nero, D.C.9
McClung, C.R.10
Coruzzi, G.M.11
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22
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0032536001
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An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture
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Zhang H., and Forde B.G. An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture. Science 279 (1998) 407-409
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Science
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Zhang, H.1
Forde, B.G.2
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23
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34248170500
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The Arabidopsis NRT1.1 transporter participates in the signalling pathway triggering root colonization of nitrate-rich patches
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This article is the first report on a signalling role of the nitrate transporter NRT1.1 in the regulation of lateral root development. It is shown that mutation of NRT1.1 alters the ANR1-dependent signalling pathway that directs preferential elongation of lateral roots in areas of the medium where nitrate concentration is high.
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Remans T., Nacry P., Pervent M., Filleur S., Diatloff E., Mounier E., Tillard P., Forde B.G., and Gojon A. The Arabidopsis NRT1.1 transporter participates in the signalling pathway triggering root colonization of nitrate-rich patches. Proc Natl Acad Sci U S A 103 (2006) 19206-19211. This article is the first report on a signalling role of the nitrate transporter NRT1.1 in the regulation of lateral root development. It is shown that mutation of NRT1.1 alters the ANR1-dependent signalling pathway that directs preferential elongation of lateral roots in areas of the medium where nitrate concentration is high.
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Proc Natl Acad Sci U S A
, vol.103
, pp. 19206-19211
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Remans, T.1
Nacry, P.2
Pervent, M.3
Filleur, S.4
Diatloff, E.5
Mounier, E.6
Tillard, P.7
Forde, B.G.8
Gojon, A.9
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24
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44349194304
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Nitrate signalling mediated by the NRT1.1 nitrate transporter anatgonises L-glutamate-induced changes in root architecture
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The authors show that glutamate sensing plays an important role in the regulation of root system architecture, and that NRT1.1-dependent nitrate signalling suppresses the effects of glutamate signalling. Using transgenic plants expressing either wild type or a mutated form of NRT1.1, the authors could separate signalling and transport functions of NRT1.1, providing a convincing evidence of the role of NRT1.1 as a nitrate sensor.
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Walch-Liu P., and Forde B.G. Nitrate signalling mediated by the NRT1.1 nitrate transporter anatgonises L-glutamate-induced changes in root architecture. Plant J 54 (2008) 820-828. The authors show that glutamate sensing plays an important role in the regulation of root system architecture, and that NRT1.1-dependent nitrate signalling suppresses the effects of glutamate signalling. Using transgenic plants expressing either wild type or a mutated form of NRT1.1, the authors could separate signalling and transport functions of NRT1.1, providing a convincing evidence of the role of NRT1.1 as a nitrate sensor.
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(2008)
Plant J
, vol.54
, pp. 820-828
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Walch-Liu, P.1
Forde, B.G.2
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25
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38649096571
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Cell-specific nitrogen responses mediate developmental plasticity
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The authors compared cell type specific transcriptomes from roots of Arabidopsis plants supplied or not with nitrate. This allowed the identification of highly localized gene responses that could not be found using whole root samples. Reverse genetics was used to characterize the functional role of one of these responses (induction of miR167 by nitrate) in the regulation of lateral root emergence.
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Gifford M.L., Dean A., Gutiérrez R.A., Coruzzi G., and Birnbaum K. Cell-specific nitrogen responses mediate developmental plasticity. Proc Natl Acad Sci U S A 105 (2008) 803-808. The authors compared cell type specific transcriptomes from roots of Arabidopsis plants supplied or not with nitrate. This allowed the identification of highly localized gene responses that could not be found using whole root samples. Reverse genetics was used to characterize the functional role of one of these responses (induction of miR167 by nitrate) in the regulation of lateral root emergence.
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Proc Natl Acad Sci U S A
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Gifford, M.L.1
Dean, A.2
Gutiérrez, R.A.3
Coruzzi, G.4
Birnbaum, K.5
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26
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48249129635
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Membrane transporters for nitrogen, phosphate and potassium uptake in plants
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Chen Y.F., Wang Y., and Wu W.H. Membrane transporters for nitrogen, phosphate and potassium uptake in plants. J Integr Plant Biol 50 (2008) 835-848
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J Integr Plant Biol
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Chen, Y.F.1
Wang, Y.2
Wu, W.H.3
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27
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16544363736
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Transcriptional regulation and functional properties of Arabidopsis Pht1;4, a high affinity transporter contributing greatly to phosphate uptake in phosphate deprived plants
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Misson J., Thibaud M.C., Bechtold N., Raghothama K., and Nussaume L. Transcriptional regulation and functional properties of Arabidopsis Pht1;4, a high affinity transporter contributing greatly to phosphate uptake in phosphate deprived plants. Plant Mol Biol 55 (2004) 727-741
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Misson, J.1
Thibaud, M.C.2
Bechtold, N.3
Raghothama, K.4
Nussaume, L.5
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28
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0035881704
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A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae
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Rubio V., Linhares F., Solano R., Martín A.C., Iglesias J., Leyva A., and Paz-Ares J. A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae. Genes Dev 15 (2001) 2122-2133
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Genes Dev
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Rubio, V.1
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Paz-Ares, J.7
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23844510188
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A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation
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Misson J., Raghothama K.G., Jain A., Jouhet J., Block M.A., Bligny R., Ortet P., Creff A., Somerville S., Rolland N., et al. A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation. Proc Natl Acad Sci U S A 102 (2005) 11934-11939
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Proc Natl Acad Sci U S A
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Misson, J.1
Raghothama, K.G.2
Jain, A.3
Jouhet, J.4
Block, M.A.5
Bligny, R.6
Ortet, P.7
Creff, A.8
Somerville, S.9
Rolland, N.10
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33846401178
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Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism
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Müller R., Morant M., Jarmer H., Nilsson L., and Nielsen T.H. Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism. Plant Physiol 143 (2007) 156-171
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Müller, R.1
Morant, M.2
Jarmer, H.3
Nilsson, L.4
Nielsen, T.H.5
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31
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21144455484
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The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses
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Miura K., Rus A., Sharkhuu A., Yokoi S., Karthikeyan A.S., Raghothama K.G., Baek D., Koo Y.D., Jin J.B., Bressan R.A., et al. The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses. Proc Natl Acad Sci U S A 102 (2005) 7760-7765
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Miura, K.1
Rus, A.2
Sharkhuu, A.3
Yokoi, S.4
Karthikeyan, A.S.5
Raghothama, K.G.6
Baek, D.7
Koo, Y.D.8
Jin, J.B.9
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Sumoylation, a post-translational regulatory process in plants
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Miura K., Jin J.B., and Hasegawa P.M. Sumoylation, a post-translational regulatory process in plants. Curr Opin Plant Biol 10 (2007) 495-502
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Curr Opin Plant Biol
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Miura, K.1
Jin, J.B.2
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33
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27844526222
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A miRNA involved in phosphate-starvation response in Arabidopsis
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Fujii H., Chiou T.J., Lin S.I., Aung K., and Zhu J.K. A miRNA involved in phosphate-starvation response in Arabidopsis. Curr Biol 15 (2005) 2038-2043
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Curr Biol
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Fujii, H.1
Chiou, T.J.2
Lin, S.I.3
Aung, K.4
Zhu, J.K.5
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34
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33745960196
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PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants
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••] this paper reports that pho2 encodes an ubiquitin-conjugating enzyme UBC24. It is shown by micrografting that a pho2 root genotype is sufficient to generate the pho2 leaf Pi accumulation phenotype. In pho2 mutants, Pi does not repress a set of Pi starvation-induced genes. The authors demonstrate that PHO2 expression is both regulated by miR399 and by Pi in a manner unrelated to miR399-mediated transcript cleavage. Finally, they report that miR399 induction by low Pi is diminished in phr1 indicating that the PHO2/miR399 regulatory module is downstream of the putative transcription factor.
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••] this paper reports that pho2 encodes an ubiquitin-conjugating enzyme UBC24. It is shown by micrografting that a pho2 root genotype is sufficient to generate the pho2 leaf Pi accumulation phenotype. In pho2 mutants, Pi does not repress a set of Pi starvation-induced genes. The authors demonstrate that PHO2 expression is both regulated by miR399 and by Pi in a manner unrelated to miR399-mediated transcript cleavage. Finally, they report that miR399 induction by low Pi is diminished in phr1 indicating that the PHO2/miR399 regulatory module is downstream of the putative transcription factor.
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(2006)
Plant Physiol
, vol.141
, pp. 988-999
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Bari, R.1
Datt Pant, B.2
Stitt, M.3
Scheible, W.R.4
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35
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33745270651
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Regulation of phosphate homeostasis by MicroRNA in Arabidopsis
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••] this paper reports that overexpression of miR399 downregulates PHO2 and enhances Pi accumulation in shoots. The authors show that unlike wild-type plants, in which Pi in old leaves is readily retranslocated to other developing young tissues, remobilization of Pi in miR399-overexpressing plants is impaired.
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••] this paper reports that overexpression of miR399 downregulates PHO2 and enhances Pi accumulation in shoots. The authors show that unlike wild-type plants, in which Pi in old leaves is readily retranslocated to other developing young tissues, remobilization of Pi in miR399-overexpressing plants is impaired.
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(2006)
Plant Cell
, vol.18
, pp. 412-421
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Chiou, T.J.1
Aung, K.2
Lin, S.I.3
Wu, C.C.4
Chiang, S.F.5
Su, C.L.6
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36
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33745963372
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pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene
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Together with ref. [33], this paper reports that PHO2 encodes an ubiquitin-conjugating enzyme UBC24. A detailed analysis revealed that greater Pi uptake in the pho2 mutant and miR399-overexpressing plants is due to increased Vmax. Changes in the expression of several organelle-specific Pi transporters were noticed, which they associated with the redistribution of intracellular Pi under excess Pi. Finally, the authors reported that miR399 and UBC24 were colocalized in the vascular cylinder.
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Aung K., Lin S.I., Wu C.C., Huang Y.T., Su C.L., and Chiou TJ. pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene. Plant Physiol 141 (2006) 1000-1011. Together with ref. [33], this paper reports that PHO2 encodes an ubiquitin-conjugating enzyme UBC24. A detailed analysis revealed that greater Pi uptake in the pho2 mutant and miR399-overexpressing plants is due to increased Vmax. Changes in the expression of several organelle-specific Pi transporters were noticed, which they associated with the redistribution of intracellular Pi under excess Pi. Finally, the authors reported that miR399 and UBC24 were colocalized in the vascular cylinder.
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(2006)
Plant Physiol
, vol.141
, pp. 1000-1011
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Aung, K.1
Lin, S.I.2
Wu, C.C.3
Huang, Y.T.4
Su, C.L.5
Chiou, TJ.6
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37
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34547497309
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Franco-Zorrilla J.M., Valli A., Todesco M., Mateos I., Puga M.I., Rubio-Somoza I., Leyva A., Weigel D., García J.A., and Paz-Ares J. Target mimicry provides a new mechanism for regulation of microRNA activity. Nat Genet 39 (2007) 1033-1037. This paper reports a characterization of the mechanism by which IPS/At4 genes, known for many years as noncoding RNA, modulate miR399 by sequestering it, thereby revealing the novel regulatory paradigm, target mimicry. Accordingly, overexpression of IPS1 results in increased accumulation of the miR-399 target PHO2 mRNA and, concomitantly, in reduced shoot Pi content. Artificial target mimics were generated for other miRNAs, showing that this mode of regulation is a fine-tune of miRNA activity.
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