MicroRNA-mediated signaling involved in plant root development

Biochemical and Biophysical Research Communications

Volumn 393, Issue 3, 2010, Pages 345-349

  Meng, Yijun ^a   Ma, Xiaoxia ^a   Chen, Dijun ^a   Wu, Ping ^a   Chen, Ming ^a  

^a ZHEJIANG UNIVERSITY   (China)

Author keywords

Arabidopsis; Feedback circuit; MicroRNAs; Rice; Root development; Signal interactions

Indexed keywords

AUXIN; MICRORNA; TRANSCRIPTION FACTOR;

ARABIDOPSIS; FEEDBACK SYSTEM; GENE INTERACTION; NONHUMAN; PLANT METABOLISM; PLANT NUTRITION; PLANT ROOT; PLANT ROOT CAP; PLANT STRESS; PRIORITY JOURNAL; RICE; RNA TRANSCRIPTION; ROOT DEVELOPMENT; SHORT SURVEY;

ARABIDOPSIS; GENE EXPRESSION REGULATION, PLANT; INDOLEACETIC ACIDS; MICRORNAS; ORYZA SATIVA; PLANT ROOTS; SIGNAL TRANSDUCTION; TRANSCRIPTION FACTORS;

ANIMALIA; ARABIDOPSIS; ARABIDOPSIS THALIANA; LILIOPSIDA; ORYZA SATIVA;

EID: 77949264252     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2010.01.129     Document Type: Short Survey

References (42)

1. Hirota A., Kato T., Fukaki H., Aida M., and Tasaka M. The auxin-regulated AP2/EREBP gene PUCHI is required for morphogenesis in the early lateral root primordium of Arabidopsis. Plant Cell 19 (2007) 2156-2168
2. Inukai Y., Sakamoto T., Ueguchi-Tanaka M., Shibata Y., Gomi K., Umemura I., Hasegawa Y., Ashikari M., Kitano H., and Matsuoka M. Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling. Plant Cell 17 (2005) 1387-1396
3. Kang Y.H., Kirik V., Hulskamp M., Nam K.H., Hagely K., Lee M.M., and Schiefelbein J. The MYB23 gene provides a positive feedback loop for cell fate specification in the Arabidopsis root epidermis. Plant Cell 21 (2009) 1080-1094
4. Liu H., Wang S., Yu X., Yu J., He X., Zhang S., Shou H., and Wu P. ARL1, a LOB-domain protein required for adventitious root formation in rice. Plant J. 43 (2005) 47-56
5. Okushima Y., Fukaki H., Onoda M., Theologis A., and Tasaka M. ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis. Plant Cell 19 (2007) 118-130
6. Thole J.M., Vermeer J.E., Zhang Y., Gadella Jr. T.W., and Nielsen E. Root hair defective4 encodes a phosphatidylinositol-4-phosphate phosphatase required for proper root hair development in Arabidopsis thaliana. Plant Cell 20 (2008) 381-395
7. Guo H.S., Xie Q., Fei J.F., and Chua N.H. MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development. Plant Cell 17 (2005) 1376-1386
8. Gutierrez L., Bussell J.D., Pacurar D.I., Schwambach J., Pacurar M., and Bellini C. Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Plant Cell (2009)
9. Wang J.W., Wang L.J., Mao Y.B., Cai W.J., Xue H.W., and Chen X.Y. Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis. Plant Cell 17 (2005) 2204-2216
10. Mallory A.C., Bartel D.P., and Bartel B. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell 17 (2005) 1360-1375
11. Mallory A.C., Dugas D.V., Bartel D.P., and Bartel B. MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr. Biol. 14 (2004) 1035-1046
12. Nikovics K., Blein T., Peaucelle A., Ishida T., Morin H., Aida M., and Laufs P. The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis. Plant Cell 18 (2006) 2929-2945
13. Meng Y., Huang F., Shi Q., Cao J., Chen D., Zhang J., Ni J., Wu P., and Chen M. Genome-wide survey of rice microRNAs and microRNA-target pairs in the root of a novel auxin-resistant mutant. Planta 230 (2009) 883-898
14. Nagpal P., Ellis C.M., Weber H., Ploense S.E., Barkawi L.S., Guilfoyle T.J., Hagen G., Alonso J.M., Cohen J.D., Farmer E.E., Ecker J.R., and Reed J.W. Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development 132 (2005) 4107-4118
15. Wu M.F., Tian Q., and Reed J.W. Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression and regulates both female and male reproduction. Development 133 (2006) 4211-4218
16. Yang J.H., Han S.J., Yoon E.K., and Lee W.S. Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells. Nucleic Acids Res. 34 (2006) 1892-1899
17. Allen E., Xie Z., Gustafson A.M., and Carrington J.C. MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121 (2005) 207-221
18. Williams L., Carles C.C., Osmont K.S., and Fletcher J.C. A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes. Proc. Natl. Acad. Sci. USA 102 (2005) 9703-9708
19. Benkova E., Michniewicz M., Sauer M., Teichmann T., Seifertova D., Jurgens G., and Friml J. Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell 115 (2003) 591-602
20. Friml J., Vieten A., Sauer M., Weijers D., Schwarz H., Hamann T., Offringa R., and Jurgens G. Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature 426 (2003) 147-153
21. Nemhauser J.L., Feldman L.J., and Zambryski P.C. Auxin and ETTIN in Arabidopsis gynoecium morphogenesis. Development 127 (2000) 3877-3888
22. Pekker I., Alvarez J.P., and Eshed Y. Auxin response factors mediate Arabidopsis organ asymmetry via modulation of KANADI activity. Plant Cell 17 (2005) 2899-2910
23. Zhang Y. miRU: an automated plant miRNA target prediction server. Nucleic Acids Res. 33 (2005) W701-W704
24. Yoon E.K., Yang J.H., Lim J., Kim S.H., Kim S.K., and Lee W.S. Auxin regulation of the microRNA390-dependent trans-acting small interfering RNA pathway in Arabidopsis lateral root development. Nucleic Acids Res. (2009)
25. Navarro L., Dunoyer P., Jay F., Arnold B., Dharmasiri N., Estelle M., Voinnet O., and Jones J.D. A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science 312 (2006) 436-439
26. Xie Q., Frugis G., Colgan D., and Chua N.H. Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev. 14 (2000) 3024-3036
27. Kawashima C.G., Yoshimoto N., Maruyama-Nakashita A., Tsuchiya Y.N., Saito K., Takahashi H., and Dalmay T. Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. Plant J. 57 (2009) 313-321
28. Broadley M.R., White P.J., Hammond J.P., Zelko I., and Lux A. Zinc in plants. New Phytol. 173 (2007) 677-702
29. Schutzendubel A., and Polle A. Plant responses to abiotic stresses: heavy metal-induced oxidative stress and protection by mycorrhization. J. Exp. Bot. 53 (2002) 1351-1365
30. Sunkar R., Kapoor A., and Zhu J.K. Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 18 (2006) 2051-2065
31. Yamasaki H., Abdel-Ghany S.E., Cohu C.M., Kobayashi Y., Shikanai T., and Pilon M. Regulation of copper homeostasis by micro-RNA in Arabidopsis. J. Biol. Chem. 282 (2007) 16369-16378
32. Bari R., Datt Pant B., Stitt M., and Scheible W.R. PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol. 141 (2006) 988-999
33. Wang C., Ying S., Huang H., Li K., Wu P., and Shou H. Involvement of OsSPX1 in phosphate homeostasis in rice. Plant J. 57 (2009) 895-904
34. Fang Z., Shao C., Meng Y., Wu P., and Chen M. Phosphate signaling in Arabidopsis and Oryza sativa. Plant Sci. 176 (2009) 170-180
35. Delhaize E., and Randall P.J. Characterization of a phosphate-accumulator mutant of Arabidopsis thaliana. Plant Physiol. 107 (1995) 207-213
36. Franco-Zorrilla J.M., Valli A., Todesco M., Mateos I., Puga M.I., Rubio-Somoza I., Leyva A., Weigel D., Garcia J.A., and Paz-Ares J. Target mimicry provides a new mechanism for regulation of microRNA activity. Nat. Genet. 39 (2007) 1033-1037
37. Simon S.A., Zhai J., Nandety R.S., McCormick K.P., Zeng J., Mejia D., and Meyers B.C. Short-read sequencing technologies for transcriptional analyses. Annu. Rev. Plant Biol. 60 (2009) 305-333
38. Hsieh L.C., Lin S.I., Shih A.C., Chen J.W., Lin W.Y., Tseng C.Y., Li W.H., and Chiou T.J. Uncovering small RNA-mediated responses to phosphate-deficiency in Arabidopsis by deep sequencing. Plant Physiol. (2009)
39. Zhao B., Liang R., Ge L., Li W., Xiao H., Lin H., Ruan K., and Jin Y. Identification of drought-induced microRNAs in rice. Biochem. Biophys. Res. Commun. 354 (2007) 585-590
40. Gifford M.L., Dean A., Gutierrez R.A., Coruzzi G.M., and Birnbaum K.D. Cell-specific nitrogen responses mediate developmental plasticity. Proc. Natl. Acad. Sci. USA 105 (2008) 803-808
41. Lee Y., Kim M., Han J., Yeom K.H., Lee S., Baek S.H., and Kim V.N. MicroRNA genes are transcribed by RNA polymerase II. EMBO J. 23 (2004) 4051-4060
42. Kim J.H., Woo H.R., Kim J., Lim P.O., Lee I.C., Choi S.H., Hwang D., and Nam H.G. Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis. Science 323 (2009) 1053-1057