PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences

Nucleic Acids Research

Volumn 30, Issue 1, 2002, Pages 325-327

  Lescot, Magali ^a,b   Déhais, Patrice ^a   Thijs, Gert ^b   Marchal, Kathleen ^b   Moreau, Yves ^b   Van De Peer, Yves ^a   Rouzé, Pierre ^a,c   Rombauts, Stephane ^a  

^a DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^b UNIVERSITY OF LEUVEN   (Belgium)

^c GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; TRANSCRIPTION FACTOR;

ARTICLE; AUTOMATION; COMPUTER ANALYSIS; COMPUTER PREDICTION; CONSENSUS SEQUENCE; EMBL NUCLEOTIDE SEQUENCE DATABASE; ENHANCER REGION; FACTUAL DATABASE; GENE CLUSTER; GENE EXPRESSION; GENE FUNCTION; GENE LOCATION; GENE SEQUENCE; GENETIC TRANSCRIPTION; INTERNET; MEDICAL INFORMATION; MEDICAL LITERATURE; MEDLINE; METHODOLOGY; NONHUMAN; PLANT GENETICS; PLANTCARE DATABASE; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN MOTIF; REGULATOR GENE; REPRESSOR GENE; SEQUENCE ANALYSIS; SEQUENCE DATABASE; TRANSFAC;

EID: 0036085047     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/30.1.325     Document Type: Article

References (9)

1. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
2. Promoter analysis of co-regulated genes in the yeast genome
3. PlantCARE, a plant cis-acting regulatory element database
4. TRANSFAC: An integrated system for gene expression regulation
5. INCLUSive: INtegrated CLustering, Upstream sequence retrieval and motif Sampling
6. A Gibbs Sampling method to detect over-represented motifs in upstream regions of co-expressed genes
7. Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
8. Gibbs motif sampling: Detection of bacterial outer membrane protein repeats
9. MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data