-
1
-
-
29144455315
-
Systematic discovery of new recognition peptides mediating protein interaction networks
-
Neduva V, Linding R, Sφ-Angrand I, Stark A, de Masi F, Gibson TJ, Lewis J, Serrano L, Russell RB (2005) Systematic discovery of new recognition peptides mediating protein interaction networks. PLoS Biol 3:e405.
-
(2005)
PLoS Biol
, vol.3
-
-
Neduva, V.1
Linding, R.2
S-Angrand, I.3
Stark, A.4
De Masi, F.5
Gibson, T.J.6
Lewis, J.7
Serrano, L.8
Russell, R.B.9
-
2
-
-
49549083915
-
Peptide-mediated interactions in biological systems: New discoveries and applications
-
Petsalaki E, Russell RB (2008) Peptide-mediated interactions in biological systems: new discoveries and applications. Curr Opin Biotechnol 19:344-350.
-
(2008)
Curr Opin Biotechnol
, vol.19
, pp. 344-350
-
-
Petsalaki, E.1
Russell, R.B.2
-
3
-
-
84858381864
-
Modulating immunity as a therapy for bacterial infections
-
Hancock RE, Nijnik A, Philpott DJ (2012) Modulating immunity as a therapy for bacterial infections. Nat Rev Microbiol 10:243-254.
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 243-254
-
-
Hancock, R.E.1
Nijnik, A.2
Philpott, D.J.3
-
4
-
-
41649100689
-
Mining the plasma proteome for cancer biomarkers
-
Hanash SM, Pitteri SJ, Faca VM (2008) Mining the plasma proteome for cancer biomarkers. Nature 452:571-579.
-
(2008)
Nature
, vol.452
, pp. 571-579
-
-
Hanash, S.M.1
Pitteri, S.J.2
Faca, V.M.3
-
5
-
-
32444449180
-
Small-molecule MDM2 antagonists reveal aberrant p53 signaling in cancer: Implications for therapy
-
Tovar C, Rosinski J, Filipovic Z, Higgins B, Kolinsky K, Hilton H, Zhao X, Vu BT, Qing W, Packman K, Myklebost O, Heimbrook DC, Vassilev LT (2006) Small-molecule MDM2 antagonists reveal aberrant p53 signaling in cancer: implications for therapy. Proc Natl Acad Sci USA 103:1888-1893.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 1888-1893
-
-
Tovar, C.1
Rosinski, J.2
Filipovic, Z.3
Higgins, B.4
Kolinsky, K.5
Hilton, H.6
Zhao, X.7
Vu, B.T.8
Qing, W.9
Packman, K.10
Myklebost, O.11
Heimbrook, D.C.12
Vassilev, L.T.13
-
6
-
-
69249158062
-
Computational design of affinity and specificity at protein-protein interfaces
-
Karanicolas J, Kuhlman B (2009) Computational design of affinity and specificity at protein-protein interfaces. Curr Opin Struct Biol 19:458-463.
-
(2009)
Curr Opin Struct Biol
, vol.19
, pp. 458-463
-
-
Karanicolas, J.1
Kuhlman, B.2
-
7
-
-
83655165302
-
Receptor antibodies as novel therapeutics for diabetes
-
Ussar S, Vienberg SG, Kahn CR (2011) Receptor antibodies as novel therapeutics for diabetes. Sci Transl Med 3:113ps47.
-
(2011)
Sci Transl Med
, vol.3
-
-
Ussar, S.1
Vienberg, S.G.2
Kahn, C.R.3
-
9
-
-
0028606741
-
Antibody-antigen interactions: New structures and new conformational changes
-
Wilson IA, Stanfield RL (1994) Antibody-antigen interactions: new structures and new conformational changes. Curr Opin Struct Biol 4:857-867.
-
(1994)
Curr Opin Struct Biol
, vol.4
, pp. 857-867
-
-
Wilson, I.A.1
Stanfield, R.L.2
-
10
-
-
59249094196
-
Anti-peptide antibody screening: Selection of high affinity monoclonal reagents by a refined surface plasmon resonance technique
-
Pope ME, Soste MV, Eyford BA, Anderson NL, Pearson TW (2009) Anti-peptide antibody screening: selection of high affinity monoclonal reagents by a refined surface plasmon resonance technique. J Immunol Methods 341:86-96.
-
(2009)
J Immunol Methods
, vol.341
, pp. 86-96
-
-
Pope, M.E.1
Soste, M.V.2
Eyford, B.A.3
Anderson, N.L.4
Pearson, T.W.5
-
11
-
-
82255164138
-
Towards a systems understanding of MHC class I and MHC class II antigen presentation
-
Neefjes J, Jongsma ML, Paul P, Bakke O (2011) Towards a systems understanding of MHC class I and MHC class II antigen presentation. Nat Rev Immunol 11:823-836.
-
(2011)
Nat Rev Immunol
, vol.11
, pp. 823-836
-
-
Neefjes, J.1
Jongsma, M.L.2
Paul, P.3
Bakke, O.4
-
12
-
-
0033388725
-
SYFPEITHI: Database for MHC ligands and peptide motifs
-
Rammensee H, Bachmann J, Emmerich NP, Bachor OA, Stevanovic S (1999) SYFPEITHI: database for MHC ligands and peptide motifs. Immunogenetics 50:213-219.
-
(1999)
Immunogenetics
, vol.50
, pp. 213-219
-
-
Rammensee, H.1
Bachmann, J.2
Emmerich, N.P.3
Bachor, O.A.4
Stevanovic, S.5
-
14
-
-
0035063937
-
Specificity and degeneracy in antigen recognition: Yin and yang in the immune system
-
Eisen HN (2001) Specificity and degeneracy in antigen recognition: yin and yang in the immune system. Annu Rev Immunol 19:1-21.
-
(2001)
Annu Rev Immunol
, vol.19
, pp. 1-21
-
-
Eisen, H.N.1
-
15
-
-
65649129980
-
Degenerate T-cell receptor recognition, autoreactive cells, and the autoimmune response in multiple sclerosis
-
Markovic-Plese S (2009) Degenerate T-cell receptor recognition, autoreactive cells, and the autoimmune response in multiple sclerosis. Neuroscientist 15:225-231.
-
(2009)
Neuroscientist
, vol.15
, pp. 225-231
-
-
Markovic-Plese, S.1
-
16
-
-
34247346627
-
How much can a T-cell antigen receptor adapt to structurally distinct antigenic peptides?
-
Mazza C, Auphan-Anezin N, Gregoire C, Guimezanes A, Kellenberger C, Roussel A, Kearney A, van der Merwe PA, Schmitt-Verhulst AM, Malissen B (2007) How much can a T-cell antigen receptor adapt to structurally distinct antigenic peptides? EMBO J 26:1972-83.
-
(2007)
EMBO J
, vol.26
, pp. 1972-1983
-
-
Mazza, C.1
Auphan-Anezin, N.2
Gregoire, C.3
Guimezanes, A.4
Kellenberger, C.5
Roussel, A.6
Kearney, A.7
Van Der Merwe, P.A.8
Schmitt-Verhulst, A.M.9
Malissen, B.10
-
17
-
-
42249105265
-
An in depth analysis of the concept of "polyspecificity" assumed to characterize TCR/BCR recognition
-
Cohn M (2008) An in depth analysis of the concept of " polyspecificity" assumed to characterize TCR/BCR recognition. Immunol Res 40:128-147.
-
(2008)
Immunol Res
, vol.40
, pp. 128-147
-
-
Cohn, M.1
-
18
-
-
33645990894
-
Differential epitope positioning within the germline antibody paratope enhances promiscuity in the primary immune response
-
Sethi DK, Agarwal A, Manivel V, Rao KV, Salunke DM (2006) Differential epitope positioning within the germline antibody paratope enhances promiscuity in the primary immune response. Immunity 24:429-438.
-
(2006)
Immunity
, vol.24
, pp. 429-438
-
-
Sethi, D.K.1
Agarwal, A.2
Manivel, V.3
Rao, K.V.4
Salunke, D.M.5
-
19
-
-
0031438526
-
Molecular basis for the binding promiscuity of an anti-p24 (HIV-1) monoclonal antibody
-
Kramer A, Keitel T, Winkler K, Stocklein W, Hohne W, Schneider-Mergener J (1997) Molecular basis for the binding promiscuity of an anti-p24 (HIV-1) monoclonal antibody. Cell 91:799-809.
-
(1997)
Cell
, vol.91
, pp. 799-809
-
-
Kramer, A.1
Keitel, T.2
Winkler, K.3
Stocklein, W.4
Hohne, W.5
Schneider-Mergener, J.6
-
20
-
-
0031454829
-
Crystallographic analysis of anti-p24 (HIV-1) monoclonal antibody cross-reactivity and polyspecificity
-
Keitel T, Kramer A, Wessner H, Scholz C, Schneider-Mergener J, Hohne W (1997) Crystallographic analysis of anti-p24 (HIV-1) monoclonal antibody cross-reactivity and polyspecificity. Cell 91:811-820.
-
(1997)
Cell
, vol.91
, pp. 811-820
-
-
Keitel, T.1
Kramer, A.2
Wessner, H.3
Scholz, C.4
Schneider-Mergener, J.5
Hohne, W.6
-
21
-
-
80054021069
-
Proteomic analysis and discovery using affinity proteomics and mass spectrometry
-
Olsson N, Wingren C, Mattsson M, James P, O'Connell D, Nilsson F, Cahill DJ, Borrebaeck CAK (2011) Proteomic analysis and discovery using affinity proteomics and mass spectrometry. Mol Cell Proteomics 10:M110003962.
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Olsson, N.1
Wingren, C.2
Mattsson, M.3
James, P.4
O'Connell, D.5
Nilsson, F.6
Cahill, D.J.7
Borrebaeck, C.A.K.8
-
22
-
-
63049087845
-
Strategy for surveying the proteome using affinity proteomics and mass spectrometry
-
Wingren C, James P, Borrebaeck CAK (2009) Strategy for surveying the proteome using affinity proteomics and mass spectrometry. Proteomics 9:1511-1517.
-
(2009)
Proteomics
, vol.9
, pp. 1511-1517
-
-
Wingren, C.1
James, P.2
Borrebaeck, C.A.K.3
-
23
-
-
84864827587
-
Quantitative proteomics targeting classes of motif-containing peptides using immunoaffinity-based mass spectrometry
-
Olsson N, James P, Borrebaeck CAK, Wingren C (2012) Quantitative proteomics targeting classes of motif-containing peptides using immunoaffinity-based mass spectrometry. Mol Cell Proteomics 11:342-354.
-
(2012)
Mol Cell Proteomics
, vol.11
, pp. 342-354
-
-
Olsson, N.1
James, P.2
Borrebaeck, C.A.K.3
Wingren, C.4
-
24
-
-
13444251422
-
Ensembl 2005
-
Hubbard T, Andrews D, Caccamo M, Cameron G, Chen Y, Clamp M, Clarke L, Coates G, Cox T, Cunningham F, Curwen V, Cutts T, Down T, Durbin R, Fernandez-Suarez XM, Gilbert J, Hammond M, Herrero J, Hotz H, Howe K, Iyer V, Jekosch K, Kahari A, Kasprzyk A, Keefe D, Keenan S, Kokocinsci F, London D, Longden I, McVicker G, Melsopp C, Meidl P, Potter S, Proctor G, Rae M, Rios D, Schuster M, Searle S, Severin J, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Trevanion S, Ureta-Vidal A, Vogel J, White S, Woodwark C, Birney E (2005) Ensembl 2005. Nucleic Acids Res 33:D447-D453.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Hubbard, T.1
Andrews, D.2
Caccamo, M.3
Cameron, G.4
Chen, Y.5
Clamp, M.6
Clarke, L.7
Coates, G.8
Cox, T.9
Cunningham, F.10
Curwen, V.11
Cutts, T.12
Down, T.13
Durbin, R.14
Fernandez-Suarez, X.M.15
Gilbert, J.16
Hammond, M.17
Herrero, J.18
Hotz, H.19
Howe, K.20
Iyer, V.21
Jekosch, K.22
Kahari, A.23
Kasprzyk, A.24
Keefe, D.25
Keenan, S.26
Kokocinsci, F.27
London, D.28
Longden, I.29
McVicker, G.30
Melsopp, C.31
Meidl, P.32
Potter, S.33
Proctor, G.34
Rae, M.35
Rios, D.36
Schuster, M.37
Searle, S.38
Severin, J.39
Slater, G.40
Smedley, D.41
Smith, J.42
Spooner, W.43
Stabenau, A.44
Stalker, J.45
Storey, R.46
Trevanion, S.47
Ureta-Vidal, A.48
Vogel, J.49
White, S.50
Woodwark, C.51
Birney, E.52
more..
-
25
-
-
24044540256
-
Specificity and versatility of SH3 and other proline-recognition domains: Structural basis and implications for cellular signal transduction
-
Li SS (2005) Specificity and versatility of SH3 and other proline-recognition domains: structural basis and implications for cellular signal transduction. Biochem J 390:641-653.
-
(2005)
Biochem J
, vol.390
, pp. 641-653
-
-
Li, S.S.1
-
26
-
-
0034008847
-
Searching for specificity in SH domains
-
Ladbury JE, Arold S (2000) Searching for specificity in SH domains. Chem Biol 7:R3-R8.
-
(2000)
Chem Biol
, vol.7
-
-
Ladbury, J.E.1
Arold, S.2
-
27
-
-
0032549142
-
Structural basis of plasticity in T cell receptor recognition of a self peptide-MHC antigen
-
Garcia KC, Degano M, Pease LR, Huang M, Peterson PA, Teyton L, Wilson IA (1998) Structural basis of plasticity in T cell receptor recognition of a self peptide-MHC antigen. Science 279:1166-1172.
-
(1998)
Science
, vol.279
, pp. 1166-1172
-
-
Garcia, K.C.1
Degano, M.2
Pease, L.R.3
Huang, M.4
Peterson, P.A.5
Teyton, L.6
Wilson, I.A.7
-
28
-
-
18344394144
-
A T cell receptor CDR3beta loop undergoes conformational changes of unprecedented magnitude upon binding to a peptide/MHC class I complex
-
Reiser JB, Gregoire C, Darnault C, Mosser T, Guimezanes A, Schmitt-Verhulst AM, Fontecilla-Camps JC, Mazza G, Malissen B, Housset D (2002) A T cell receptor CDR3beta loop undergoes conformational changes of unprecedented magnitude upon binding to a peptide/MHC class I complex. Immunity 16:345-354.
-
(2002)
Immunity
, vol.16
, pp. 345-354
-
-
Reiser, J.B.1
Gregoire, C.2
Darnault, C.3
Mosser, T.4
Guimezanes, A.5
Schmitt-Verhulst, A.M.6
Fontecilla-Camps, J.C.7
Mazza, G.8
Malissen, B.9
Housset, D.10
-
29
-
-
0037240790
-
A structural basis for the selection of dominant alphabeta T cell receptors in antiviral immunity
-
Kjer-Nielsen L, Clements CS, Purcell AW, Brooks AG, Whisstock JC, Burrows SR, McCluskey J, Rossjohn J (2003) A structural basis for the selection of dominant alphabeta T cell receptors in antiviral immunity. Immunity 18:53-64.
-
(2003)
Immunity
, vol.18
, pp. 53-64
-
-
Kjer-Nielsen, L.1
Clements, C.S.2
Purcell, A.W.3
Brooks, A.G.4
Whisstock, J.C.5
Burrows, S.R.6
McCluskey, J.7
Rossjohn, J.8
-
31
-
-
77956171332
-
Computational mapping of anchoring spots on protein surfaces
-
Ben-Shimon A, Eisenstein M (2010) Computational mapping of anchoring spots on protein surfaces. J Mol Biol 402:259-277.
-
(2010)
J Mol Biol
, vol.402
, pp. 259-277
-
-
Ben-Shimon, A.1
Eisenstein, M.2
-
32
-
-
0033883409
-
Recombining germline-derived CDR sequences for creating diverse single-framework antibody libraries
-
Soderlind E, Strandberg L, Jirholt P, Kobayashi N, Alexeiva V, Aberg AM, Nilsson A, Jansson B, Ohlin M, Wingren C, Danielsson L, Carlsson R, Borrebaeck CAK (2000) Recombining germline-derived CDR sequences for creating diverse single-framework antibody libraries. Nat Biotechnol 18:852-856.
-
(2000)
Nat Biotechnol
, vol.18
, pp. 852-856
-
-
Soderlind, E.1
Strandberg, L.2
Jirholt, P.3
Kobayashi, N.4
Alexeiva, V.5
Aberg, A.M.6
Nilsson, A.7
Jansson, B.8
Ohlin, M.9
Wingren, C.10
Danielsson, L.11
Carlsson, R.12
Borrebaeck, C.A.K.13
-
33
-
-
79953205955
-
Targeting peptide termini, a novel immunoaffinity approach to reduce complexity in mass spectrometric protein identification
-
Hoeppe S, Schreiber TD, Planatscher H, Zell A, Templin MF, Stoll D, Joos TO, Poetz O (2011) Targeting peptide termini, a novel immunoaffinity approach to reduce complexity in mass spectrometric protein identification. Mol Cell Proteomics 10:M110 002857.
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Hoeppe, S.1
Schreiber, T.D.2
Planatscher, H.3
Zell, A.4
Templin, M.F.5
Stoll, D.6
Joos, T.O.7
Poetz, O.8
-
34
-
-
77955105667
-
Optimal selection of epitopes for TXP-immunoaffinity mass spectrometry
-
Planatscher H, Supper J, Poetz O, Stoll D, Joos T, Templin MF, Zell A (2010) Optimal selection of epitopes for TXP-immunoaffinity mass spectrometry. Algorithms Mol Biol 5:28.
-
(2010)
Algorithms Mol Biol
, vol.5
, pp. 28
-
-
Planatscher, H.1
Supper, J.2
Poetz, O.3
Stoll, D.4
Joos, T.5
Templin, M.F.6
Zell, A.7
-
35
-
-
67049100049
-
The proteios software environment: An extensible multiuser platform for management and analysis of proteomics data
-
Hakkinen J, Vincic G, Mansson O, Warell K, Levander F (2009) The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data. J Proteome Res 8:3037-3043.
-
(2009)
J Proteome Res
, vol.8
, pp. 3037-3043
-
-
Hakkinen, J.1
Vincic, G.2
Mansson, O.3
Warell, K.4
Levander, F.5
-
37
-
-
67849130555
-
PEPFOLD: An online resource for de novo peptide structure prediction
-
Maupetit J, Derreumaux P, Tuffery P (2009) PEPFOLD: an online resource for de novo peptide structure prediction. Nucleic Acids Res 37:W498-W503.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Maupetit, J.1
Derreumaux, P.2
Tuffery, P.3
-
38
-
-
33748604047
-
PROFASI: A Monte Carlo simulation package for protein folding and aggregation
-
Irback A, Mohanty S (2006) PROFASI: A Monte Carlo simulation package for protein folding and aggregation. J Comput Chem 27:1548-1555.
-
(2006)
J Comput Chem
, vol.27
, pp. 1548-1555
-
-
Irback, A.1
Mohanty, S.2
-
39
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
Guex N, Peitsch MC (1997) SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18:2714-2723.
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
41
-
-
64049102289
-
Binding of small-molecule ligands to proteins: "what you see" is not always "what you get"
-
Mobley DL, Dill KA (2009) Binding of small-molecule ligands to proteins: "what you see" is not always "what you get". Structure 17:489-498.
-
(2009)
Structure
, vol.17
, pp. 489-498
-
-
Mobley, D.L.1
Dill, K.A.2
|