The human plasma proteome: Analysis of Chinese serum using shotgun strategy

Proteomics

Volumn 5, Issue 13, 2005, Pages 3442-3453

  He, Ping ^a   He, Hong Zhi ^a   Dai, Jie ^b   Wang, Ying ^a   Sheng, Quan Hu ^b   Zhou, Lan Ping ^a   Zhang, Zi Sen ^a   Sun, Yu Lin ^a   Liu, Fang ^a   Wang, Kun ^c   Zhang, Jin Sheng ^a   Wang, Hui Xin ^a   Song, Zhen Mei ^a   Zhang, Hai Rong ^c   Zeng, Rong ^b   Zhao, Xiaohang ^a,c  

^a CANCER HOSPITAL   (China)

^b INSTITUTE OF BIOCHEMISTRY AND CELL BIOLOGY   (China)

^c Yanjing Hospital   (China)

Author keywords

Biomarkers; Mass spectrometry; Reference specimen; Serum proteome; Shotgun proteomics

Indexed keywords

CA 125 ANTIGEN; COMPLEMENT COMPONENT C5; PLASMA PROTEIN; PROTEOME; TRYPSIN; TUMOR MARKER;

ARTICLE; CHINESE; DISEASE MARKER; ELECTROSPRAY MASS SPECTROMETRY; FEMALE; HUMAN; MALE; MASS SPECTROMETRY; NORMAL HUMAN; NUCLEOTIDE SEQUENCE; OVARY CANCER; PLASMA; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BLOOD LEVEL; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; SEPARATION TECHNIQUE;

BIOLOGICAL MARKERS; BLOOD PROTEINS; CHINA; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; FEMALE; HUMANS; MALE; MASS SPECTROMETRY; PEPTIDES; PROTEINS; PROTEOME; PROTEOMICS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; TRYPSIN;

EID: 23944442772     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200401301     Document Type: Article

References (29)

1. Anderson, N. L., Anderson, N. G., Mol. Cell. Proteomics 2002, 1, 845-867.
2. Pieper, R., Gatlin, C. L., Makusky, A. J., Russo, P. S., Schatz, C. R., Miller, S. S., Su, Q. et al., Proteomics 2003, 3, 1345-1364.
3. Adkins, J. N., Varnum, S. M., Auberry, K. J., Moore, R. J., Angell, N. H., Smith, R. D., Springer, D. L. et al., Mol. Cell. Proteomics 2002, 1, 947-955.
4. Petricoin, E. F., Ardekani, A. M., Hitt, B. A., Levine, R. J., Fusaro, V. A., Steinberg, S. M., Mills, G. B. et al., Lancet 2002, 359, 572-577.
5. Anderson, N. L., Polanski, M., Pieper, R., Gatlin, T., Tirumalai, R. S., Conrads, T. R., Vaenstra, T. D. et al., Mol. Cell. Proteomics 2004, 3, 311-326.
6. Eberini, I., Agnello, D., Miller, I., Villa, P., Fratelli, M., Ghazzi, P., Gemeiner, M. et al., Electrophoresis 2000, 21, 2170-2180.
7. Eberini, I., Miller, I., Zancan, V., Bolego, C., Paglisi, L., Gemeiner, M., Gianazza, E. et al., Electrophoresis 1999, 20, 846-853.
8. Haynes, P., Miller, I., Aebersold, R., Gemeiner, M., Eberini, I., Lovati, M. R., Manzoni, C. et al., Electrophoresis 1998, 19, 1484-1492.
9. Edwards, J. J., Anderson, N. G., Nance, S. L., Anderson, N. L., Blood 1979, 53, 1121-1132.
10. Anderson, L., Anderson, N. G., Proc. Natl. Acad. Sci. USA 1977, 74, 5421-5425.
11. Miller, I., Haynes, P., Gemeiner, M., Aebersold, R., Manzoni, C., Lovati, M. R., Vignati, M. et al., Electrophoresis 1998, 19, 1493-1500.
12. Miller, I., Haynes, P., Eberini, I., Gemeiner, M., Aebersold, R., Gianazza, E. et al., Electrophoresis 1999, 20, 836-845.
13. Peters, T., Clin. Chem. 1987, 33, 1317-1325.
14. Stephen, J. F., Peter, M. L., Curr. Opin. Chem. Biol. 2001, 5, 26-33.
15. Rabilloud, T., Proteomics 2002, 2, 3-10.
16. McDonald, W. H., Yates, J. R., Dis. Markers 2002, 18, 99-105.
17. Wolters, D. A., Washburn, M. P., Yates, J. R., Anal. Chem. 2001, 73, 5683-5690.
18. Wienkoop, S., Glinski, M., Tanaka, N., Tolstikov, V., Fiehn, O., Weckwerth, W., Rapid Commun. Mass Spectrom. 2004, 18, 643-650.
19. McDonald, W. H., Yates, J. R., Curr. Opin. Mol. Ther. 2003, 5, 302-309.
20. Wu, S. L., Choudhary, G., Ramstrom, M., Bergquist, J., Hancock, K. S., J. Proteome. Res. 2003, 2, 383-393.
21. Omenn, G. S., Proteomics 2004, 4, 1235-1240.
22. Zhang, K., Zolotarjova, N., Nicol, G., Martosella, J., Yang, L. S., Szafranski, C., Bailey, J. et al., Agitent Technologies, publication 5988-9813EN.
23. Washburn, M. P., Wolters, D., Yates, J. R., Nat. Biotechnol. 2001, 19, 242-247.
24. Wu, C. C., MacCoss, M. J., Howell, K. E., Yates, J. R., Nat. Biotechnol. 2003, 21, 532-538.
25. ftp://ftp.ebi.ac.uk/pub/databases/IPI/current/
26. ftp://ftp.ebi.ac.uk/pub/databases/swissprot/
27. ftp://ftp.ncbi.nih.gov/refseq/
28. http://www.bioinformatics.med.umich.edu/app1/sqlwebaccess
29. Lee, C. L., Hsiao, H. H., Lin, C. W., Wu, S. P. et al., Proteomics 2003, 3, 2472-2486.