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Volumn 8, Issue 3, 2009, Pages 1565-1576

Stable isotope dilution multidimensional liquid chromatography-tandem mass spectrometry for pancreatic cancer serum biomarker discovery

Author keywords

Pancreatic cancer; Serum biomarkers; SILAC

Indexed keywords

ACTIN RELATED PROTEIN 2-3 COMPLEX; ADENOSINE DIPHOSPHATE RIBOSYLATION FACTOR 1; AMINO ACID; AMINOACYLASE; ASPARTATE AMINOTRANSFERASE ISOENZYME 1; BASAL CELL ADHESION MOLECULE; CALVASCULIN; CARBONATE DEHYDRATASE I; CATALASE; CATHEPSIN D; CENTROMERE PROTEIN E; CHAPERONIN; CYTOKERATIN 18; CYTOKERATIN 8; DIPEPTIDYL PEPTIDASE I; DOPACHROME TAUTOMERASE; FILAMIN A; INTERCELLULAR ADHESION MOLECULE 1; MATRILYSIN; MOESIN; OSTEONECTIN; OXYGEN REGULATED PROTEIN 150; PEROXIREDOXIN 6; PHOSPHATIDYLETHANOLAMINE BINDING PROTEIN; PYRIDOXAL KINASE; RYANODINE RECEPTOR 3; STABLE ISOTOPE; TUMOR MARKER; UBIQUITIN CONJUGATING ENZYME E2; UNCLASSIFIED DRUG; VINCULIN;

EID: 65249113798     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr800904z     Document Type: Article
Times cited : (83)

References (47)
  • 1
    • 0028799366 scopus 로고
    • The National Cancer Data Base report on pancreatic cancer
    • Niederhuber, J. E.; Brennan, M. F.; Menck, H. R. The National Cancer Data Base report on pancreatic cancer. Cancer 1995, 76, 1671-1677.
    • (1995) Cancer , vol.76 , pp. 1671-1677
    • Niederhuber, J.E.1    Brennan, M.F.2    Menck, H.R.3
  • 2
    • 41349099104 scopus 로고    scopus 로고
    • Jemal, A.; Siegel, R.; Ward, E.; Hao, Y.; Xu, J.; Murray, T.; Thun, M. J. Cancer statistics, 2008. CA Cancer J. Clin. 2008, 58, 71-96.
    • Jemal, A.; Siegel, R.; Ward, E.; Hao, Y.; Xu, J.; Murray, T.; Thun, M. J. Cancer statistics, 2008. CA Cancer J. Clin. 2008, 58, 71-96.
  • 3
    • 0032784821 scopus 로고    scopus 로고
    • Abrams, R. A.; Grochow, L. B.; Chakravarthy, A.; Sohn, T. A.; Zahurak, M. L.; Haulk, T. L.; Ord, S.; Hruban, R. H.; Lillemoe, K. D.; Pitt, H. A.; Cameron, J. L.; Yeo, C. J. Intensified adjuvant therapy for pancreatic and periampullary adenocarcinoma: survival results and observations regarding patterns of failure, radiotherapy doseand CA19-9 levels. Int. J.Radiat. Oncol. Biol. Phys. 1999, 44, 10391046.
    • Abrams, R. A.; Grochow, L. B.; Chakravarthy, A.; Sohn, T. A.; Zahurak, M. L.; Haulk, T. L.; Ord, S.; Hruban, R. H.; Lillemoe, K. D.; Pitt, H. A.; Cameron, J. L.; Yeo, C. J. Intensified adjuvant therapy for pancreatic and periampullary adenocarcinoma: survival results and observations regarding patterns of failure, radiotherapy doseand CA19-9 levels. Int. J.Radiat. Oncol. Biol. Phys. 1999, 44, 10391046.
  • 6
    • 0023812601 scopus 로고
    • Elevated serum levels of tumor marker CA19-9 in acute cholangitis
    • Albert, M. B.; Steinberg, W. M.; Henry, J. P. Elevated serum levels of tumor marker CA19-9 in acute cholangitis. Dig. Dis. Sci. 1988, 33, 1223-1225.
    • (1988) Dig. Dis. Sci , vol.33 , pp. 1223-1225
    • Albert, M.B.1    Steinberg, W.M.2    Henry, J.P.3
  • 8
    • 0024352040 scopus 로고
    • Enzyme-linked PNA lectin binding assay compared with CA19-9 and CEA radioimmunoassay as a diagnostic blood test for pancreatic cancer
    • Ching, C. K.; Rhodes, J. M. Enzyme-linked PNA lectin binding assay compared with CA19-9 and CEA radioimmunoassay as a diagnostic blood test for pancreatic cancer. Br. J. Cancer 1989, 59, 949953.
    • (1989) Br. J. Cancer , vol.59 , pp. 949953
    • Ching, C.K.1    Rhodes, J.M.2
  • 11
    • 26844512938 scopus 로고    scopus 로고
    • Characterization of proteins in human pancreatic cancer serum using differential gel electro-phoresis and tandem mass spectrometry
    • Yu, K. H.; Rustgi, A. K.; Blair, I. A. Characterization of proteins in human pancreatic cancer serum using differential gel electro-phoresis and tandem mass spectrometry. J. Proteome Res. 2005, 4, 1742-1751.
    • (2005) J. Proteome Res , vol.4 , pp. 1742-1751
    • Yu, K.H.1    Rustgi, A.K.2    Blair, I.A.3
  • 12
    • 26844561626 scopus 로고    scopus 로고
    • Effect of immunoaffinity depletion of human serum during proteomic investigations
    • Yocum, A. K.; Yu, K.; Oe, T.; Blair, I. A. Effect of immunoaffinity depletion of human serum during proteomic investigations. L. Proteome Res. 2005, 4, 1722-1731.
    • (2005) L. Proteome Res , vol.4 , pp. 1722-1731
    • Yocum, A.K.1    Yu, K.2    Oe, T.3    Blair, I.A.4
  • 13
    • 29144480597 scopus 로고    scopus 로고
    • Analysis of protein expression during oxidative stress in breast epithelial cells using a stable isotope labeled proteome internal standard
    • Yan, Y.; Weaver, V. M.; Blair, I. A. Analysis of protein expression during oxidative stress in breast epithelial cells using a stable isotope labeled proteome internal standard. L. Proteome Res. 2005, 4, 2007-2014.
    • (2005) L. Proteome Res , vol.4 , pp. 2007-2014
    • Yan, Y.1    Weaver, V.M.2    Blair, I.A.3
  • 14
    • 33750106379 scopus 로고    scopus 로고
    • Proteomics-based strategy to identify biomarkers and pharmacological targets in leukemias with t(4;11) translocations
    • Yocum, A. K.; Busch, C. M.; Felix, C. A.; Blair, I. A. Proteomics-based strategy to identify biomarkers and pharmacological targets in leukemias with t(4;11) translocations. J. Proteome Res. 2006, 5, 2743-2753.
    • (2006) J. Proteome Res , vol.5 , pp. 2743-2753
    • Yocum, A.K.1    Busch, C.M.2    Felix, C.A.3    Blair, I.A.4
  • 15
    • 33845591072 scopus 로고    scopus 로고
    • Quantitative analysis of amyloid beta peptides in cerebrospinal fluid of Alzheimer's disease patients by immu-noaffinity purification and stable isotope dilution liquid chroma-tography/negative electrospray ionization tandem mass spectrometry
    • Oe, T.; Ackermann, B. L.; Inoue, K.; Berna, M. J.; Garner, C. O.; Gelfanova, V.; Dean, R. A.; Siemers, E. R.; Holtzman, D. M.; Farlow, M. R.; Blair, I. A. Quantitative analysis of amyloid beta peptides in cerebrospinal fluid of Alzheimer's disease patients by immu-noaffinity purification and stable isotope dilution liquid chroma-tography/negative electrospray ionization tandem mass spectrometry. Rapid Commun. Mass Spectrom. 2006, 20, 3723-3735.
    • (2006) Rapid Commun. Mass Spectrom , vol.20 , pp. 3723-3735
    • Oe, T.1    Ackermann, B.L.2    Inoue, K.3    Berna, M.J.4    Garner, C.O.5    Gelfanova, V.6    Dean, R.A.7    Siemers, E.R.8    Holtzman, D.M.9    Farlow, M.R.10    Blair, I.A.11
  • 16
    • 26844561626 scopus 로고    scopus 로고
    • Effect of immunoaffinity depletion of human serum during proteomic investigations
    • Yocum, A. K.; Yu, K.; Oe, T.; Blair, I. A. Effect of immunoaffinity depletion of human serum during proteomic investigations. J Proteome Res. 2005, 4, 1722-1731.
    • (2005) J Proteome Res , vol.4 , pp. 1722-1731
    • Yocum, A.K.1    Yu, K.2    Oe, T.3    Blair, I.A.4
  • 17
    • 14844311934 scopus 로고    scopus 로고
    • Candidate-based proteomics in the search for biom-arkers of cardiovascular disease
    • Anderson, L. Candidate-based proteomics in the search for biom-arkers of cardiovascular disease. J. Physiol. 2005, 563, 23-60.
    • (2005) J. Physiol , vol.563 , pp. 23-60
    • Anderson, L.1
  • 19
    • 33644861546 scopus 로고    scopus 로고
    • Immobilized pH gradient isoelectric focusing as a first-dimension separation in shotgun proteomics
    • Cargile, B. J.; Sevinsky, J. R.; Essader, A. S.; Stephenson, J. L., Jr.; Bundy, J. L. Immobilized pH gradient isoelectric focusing as a first-dimension separation in shotgun proteomics. J. Biomol. Tech. 2005, 16, 181-189.
    • (2005) J. Biomol. Tech , vol.16 , pp. 181-189
    • Cargile, B.J.1    Sevinsky, J.R.2    Essader, A.S.3    Stephenson Jr., J.L.4    Bundy, J.L.5
  • 21
    • 26844561626 scopus 로고    scopus 로고
    • Effect of immunoaffinity depletion of human serum during proteomic investigations
    • Yocum, A. K.; Yu, K.; Oe, T.; Blair, I. A. Effect of immunoaffinity depletion of human serum during proteomic investigations. J Proteome Res. 2005, 4, 1722-1731.
    • (2005) J Proteome Res , vol.4 , pp. 1722-1731
    • Yocum, A.K.1    Yu, K.2    Oe, T.3    Blair, I.A.4
  • 23
    • 33645465791 scopus 로고    scopus 로고
    • Proteome analysis of human plasma and amniotic fluid by Off-Gel isoelectric focusing followed by nano-LC-MS/MS
    • Michel, P. E.; Crettaz, D.; Morier, P.; Heller, M.; Gallot, D.; Tissot, J. D.; Reymond, F.; Rossier, J. S. Proteome analysis of human plasma and amniotic fluid by Off-Gel isoelectric focusing followed by nano-LC-MS/MS. Electrophoresis 2006, 27, 1169-1181.
    • (2006) Electrophoresis , vol.27 , pp. 1169-1181
    • Michel, P.E.1    Crettaz, D.2    Morier, P.3    Heller, M.4    Gallot, D.5    Tissot, J.D.6    Reymond, F.7    Rossier, J.S.8
  • 24
    • 23944434470 scopus 로고    scopus 로고
    • Tang, H. Y.; li-Khan, N.; Echan, L. A.; Levenkova, N.; Rux, J. J.; Speicher, D. W. A novel four-dimensional strategy combining protein and peptide separation methods enables detection oflow-abundance proteins in human plasma and serum proteomes. Proteomics 2005, 5, 3329-3342.
    • Tang, H. Y.; li-Khan, N.; Echan, L. A.; Levenkova, N.; Rux, J. J.; Speicher, D. W. A novel four-dimensional strategy combining protein and peptide separation methods enables detection oflow-abundance proteins in human plasma and serum proteomes. Proteomics 2005, 5, 3329-3342.
  • 25
    • 0033662167 scopus 로고    scopus 로고
    • An immobiline DryStrip application method enabling high-capacity two-dimensional gel electrophoresis
    • Sabounchi-Schutt, F.; Astrom, J.; Olsson, I.; Eklund, A.; Grunewald, J.; Bjellqvist, B. An immobiline DryStrip application method enabling high-capacity two-dimensional gel electrophoresis. Electrophoresis 2000, 21, 3649-3656.
    • (2000) Electrophoresis , vol.21 , pp. 3649-3656
    • Sabounchi-Schutt, F.1    Astrom, J.2    Olsson, I.3    Eklund, A.4    Grunewald, J.5    Bjellqvist, B.6
  • 26
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong, S. E.; Blagoev, B.; Kratchmarova, I.; Kristensen, D. B.; Steen, H.; Pandey, A.; Mann, M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 2002, 1, 376-386.
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6    Mann, M.7
  • 27
    • 29144480597 scopus 로고    scopus 로고
    • Analysis of protein expressiond uring oxidative stress in breast epithelial cells using a stable isotope labeled proteome internal standard
    • Yan, Y.; Weaver, V. M.; Blair, I. A. Analysis of protein expressiond uring oxidative stress in breast epithelial cells using a stable isotope labeled proteome internal standard. J. Proteome Res. 2005, 4, 2007-2014.
    • (2005) J. Proteome Res , vol.4 , pp. 2007-2014
    • Yan, Y.1    Weaver, V.M.2    Blair, I.A.3
  • 28
    • 33750106379 scopus 로고    scopus 로고
    • Proteomics-based strategy to identify biomarkers and pharmacological targets in leukemias with t(4;11) translocations
    • Yocum, A. K.; Busch, C. M.; Felix, C. A.; Blair, I. A. Proteomics-based strategy to identify biomarkers and pharmacological targets in leukemias with t(4;11) translocations. J. Proteome Res. 2006, 5, 2743-2753.
    • (2006) J. Proteome Res , vol.5 , pp. 2743-2753
    • Yocum, A.K.1    Busch, C.M.2    Felix, C.A.3    Blair, I.A.4
  • 29
    • 0034789979 scopus 로고    scopus 로고
    • Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
    • Han, D. K.; Eng, J.; Zhou, H.; Aebersold, R. Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry. Nat. Biotechnol. 2001, 19, 946-51.
    • (2001) Nat. Biotechnol , vol.19 , pp. 946-951
    • Han, D.K.1    Eng, J.2    Zhou, H.3    Aebersold, R.4
  • 30
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa, M.; Goto, S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000, 28, 27-30.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 33
    • 0030770449 scopus 로고    scopus 로고
    • Caspase cleavage of keratin 18 and reorganization of intermediate filaments during epithelial cell apoptosis
    • Caulin, C.; Salvesen, G. S.; Oshima, R. G. Caspase cleavage of keratin 18 and reorganization of intermediate filaments during epithelial cell apoptosis. J. Cell Biol. 1997, 138, 1379-1394.
    • (1997) J. Cell Biol , vol.138 , pp. 1379-1394
    • Caulin, C.1    Salvesen, G.S.2    Oshima, R.G.3
  • 34
    • 0031455379 scopus 로고    scopus 로고
    • Apoptosis generates stable fragments of human type I keratins
    • Ku, N. O.; Liao, J.; Omary, M. B. Apoptosis generates stable fragments of human type I keratins. J. Biol. Chem. 1997, 272, 33197-33203.
    • (1997) J. Biol. Chem , vol.272 , pp. 33197-33203
    • Ku, N.O.1    Liao, J.2    Omary, M.B.3
  • 35
    • 49749117101 scopus 로고    scopus 로고
    • Hosokawa, M.; Kashiwaya, K.; Eguchi, H.; Ohigashi, H.; Ishikawa, O.; Furihata, M.; Shinomura, Y.; Imai, K.; Nakamura, Y.; Nakagawa, H. Over-expression of cysteine proteinase inhibitor cystatin 6 promotes pancreatic cancer growth. Cancer Sci. 2008, 99, 16261632.
    • Hosokawa, M.; Kashiwaya, K.; Eguchi, H.; Ohigashi, H.; Ishikawa, O.; Furihata, M.; Shinomura, Y.; Imai, K.; Nakamura, Y.; Nakagawa, H. Over-expression of cysteine proteinase inhibitor cystatin 6 promotes pancreatic cancer growth. Cancer Sci. 2008, 99, 16261632.
  • 36
    • 0028559479 scopus 로고
    • Apoptosis in breast cancer as related to histopathological characteristics and prognosis
    • Lipponen, P.; Aaltomaa, S.; Kosma, V. M.; Syrjanen, K. Apoptosis in breast cancer as related to histopathological characteristics and prognosis. Eur. J. Cancer 1994, 30A, 2068-2073.
    • (1994) Eur. J. Cancer , vol.30 A , pp. 2068-2073
    • Lipponen, P.1    Aaltomaa, S.2    Kosma, V.M.3    Syrjanen, K.4
  • 37
    • 0032055936 scopus 로고    scopus 로고
    • Berardo, M. D.; Elledge, R. M.; de Moor, C.; Clark, G. M.; Osborne, C. K.; Allred, D. C. bcl-2 and apoptosis in lymph node positive breast carcinoma. Cancer 1998, 82, 1296-1302.
    • Berardo, M. D.; Elledge, R. M.; de Moor, C.; Clark, G. M.; Osborne, C. K.; Allred, D. C. bcl-2 and apoptosis in lymph node positive breast carcinoma. Cancer 1998, 82, 1296-1302.
  • 38
    • 0031927561 scopus 로고    scopus 로고
    • Apoptotic index correlates to bcl-2 and p53 protein expression, histological grade and prognosis in invasive breast cancers
    • Zhang, G. J.; Kimijima, I.; Abe, R.; Watanabe, T.; Kanno, M.; Hara, K.; Tsuchiya, A. Apoptotic index correlates to bcl-2 and p53 protein expression, histological grade and prognosis in invasive breast cancers. Anticancer Res. 1998, 18, 1989-1998.
    • (1998) Anticancer Res , vol.18 , pp. 1989-1998
    • Zhang, G.J.1    Kimijima, I.2    Abe, R.3    Watanabe, T.4    Kanno, M.5    Hara, K.6    Tsuchiya, A.7
  • 40
    • 0346035003 scopus 로고    scopus 로고
    • Measurement of an apoptotic product in the sera of breast cancer patients
    • Ueno, T.; Toi, M.; Biven, K.; Bando, H.; Ogawa, T.; Linder, S. Measurement of an apoptotic product in the sera of breast cancer patients. Eur. J. Cancer 2003, 39, 769-774.
    • (2003) Eur. J. Cancer , vol.39 , pp. 769-774
    • Ueno, T.1    Toi, M.2    Biven, K.3    Bando, H.4    Ogawa, T.5    Linder, S.6
  • 41
    • 34548230927 scopus 로고    scopus 로고
    • Getting to the site of inflammation: The leukocyte adhesion cascade updated
    • Ley, K.; Laudanna, C.; Cybulsky, M. I.; Nourshargh, S. Getting to the site of inflammation: the leukocyte adhesion cascade updated. Nat. Rev. Immunol. 2007, 7, 678-689.
    • (2007) Nat. Rev. Immunol , vol.7 , pp. 678-689
    • Ley, K.1    Laudanna, C.2    Cybulsky, M.I.3    Nourshargh, S.4
  • 43
    • 0034525947 scopus 로고    scopus 로고
    • Basal-cell adhesion molecule (B-CAM) is induced in epithelial skin tumors and inflammatory epidermis, and is expressed at cell-cell and cell-substrate contact sites
    • Schon, M.; Klein, C. E.; Hogenkamp, V.; Kaufmann, R.; Wienrich, B. G.; Schon, M. P. Basal-cell adhesion molecule (B-CAM) is induced in epithelial skin tumors and inflammatory epidermis, and is expressed at cell-cell and cell-substrate contact sites. J. Invest Dermatol. 2000, 115, 1047-1053.
    • (2000) J. Invest Dermatol , vol.115 , pp. 1047-1053
    • Schon, M.1    Klein, C.E.2    Hogenkamp, V.3    Kaufmann, R.4    Wienrich, B.G.5    Schon, M.P.6
  • 44
    • 33645113450 scopus 로고    scopus 로고
    • Review: Lutheran/B-CAM: a laminin receptor on red blood cells and in various tissues
    • Kikkawa, Y.; Miner, J. H. Review: Lutheran/B-CAM: a laminin receptor on red blood cells and in various tissues. Connect. Tissue Res. 2005, 46, 193-199.
    • (2005) Connect. Tissue Res , vol.46 , pp. 193-199
    • Kikkawa, Y.1    Miner, J.H.2
  • 45
    • 0027944580 scopus 로고
    • Molecular cloning of the B-CAM cell surface glycoprotein of epithelial cancers: A novel member of the immu-noglobulin superfamily
    • Campbell, I. G.; Foulkes, W. D.; Senger, G.; Trowsdale, J.; Garin-Chesa, P.; Rettig, W. J. Molecular cloning of the B-CAM cell surface glycoprotein of epithelial cancers: a novel member of the immu-noglobulin superfamily. Cancer Res. 1994, 54, 5761-5765.
    • (1994) Cancer Res , vol.54 , pp. 5761-5765
    • Campbell, I.G.1    Foulkes, W.D.2    Senger, G.3    Trowsdale, J.4    Garin-Chesa, P.5    Rettig, W.J.6
  • 46
    • 0024791128 scopus 로고
    • MUC18, a marker of tumor progression in human melanoma, shows sequence similarity to the neural cell adhesion molecules of the immuno-globulin superfamily
    • Lehmann, J. M.; Riethmuller, G.; Johnson, J. P. MUC18, a marker of tumor progression in human melanoma, shows sequence similarity to the neural cell adhesion molecules of the immuno-globulin superfamily. Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 98919895.
    • (1989) Proc. Natl. Acad. Sci. U.S.A , vol.86 , pp. 98919895
    • Lehmann, J.M.1    Riethmuller, G.2    Johnson, J.P.3
  • 47
    • 38349068918 scopus 로고    scopus 로고
    • Keshishian, H.; Addona, T.; Burgess, M.; Kuhn, E.; Carr, S. A. Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution. Mol. Cell. Proteomics 2007, 6, 2212-2229. PR800904Z
    • Keshishian, H.; Addona, T.; Burgess, M.; Kuhn, E.; Carr, S. A. Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution. Mol. Cell. Proteomics 2007, 6, 2212-2229. PR800904Z


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