Expanding targets of DNAzyme-based sensors through deactivation and activation of DNAzymes by single uracil removal: Sensitive fluorescent assay of uracil-DNA glycosylase

Analytical Chemistry

Volumn 84, Issue 22, 2012, Pages 9981-9987

  Xiang, Yu ^a   Lu, Yi ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTES; CATALYTIC CORE; COFACTORS; DEOXYRIBOZYMES; DEOXYURIDINE; DNA SUBSTRATES; DNAZYME; DOUBLE STRANDED DNA; FLUORESCENCE ENHANCEMENT; FLUORESCENT ASSAYS; SENSITIVE DETECTION; SIGNAL AMPLIFICATIONS; URACIL-DNA GLYCOSYLASE;

AROMATIC COMPOUNDS; BIOSENSORS; FLUORESCENCE; FLUOROPHORES; SIGNAL PROCESSING;

DNA;

DEOXYRIBOZYME; URACIL; URACIL DNA GLYCOSIDASE;

ARTICLE; BIOCATALYSIS; CHEMISTRY; ENZYME ACTIVATION; ENZYME ASSAY; ENZYMOLOGY; ESCHERICHIA COLI; GENETIC PROCEDURES; GENETICS; METABOLISM; METHODOLOGY; NUCLEOTIDE SEQUENCE; SPECTROFLUOROMETRY;

BASE SEQUENCE; BIOCATALYSIS; BIOSENSING TECHNIQUES; DNA, CATALYTIC; ENZYME ACTIVATION; ENZYME ASSAYS; ESCHERICHIA COLI; SPECTROMETRY, FLUORESCENCE; URACIL; URACIL-DNA GLYCOSIDASE;

EID: 84869447304     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac302424f     Document Type: Article

References (57)

1. Robertson, D. L.; Joyce, G. F. Nature 1990, 344, 467-468
2. Breaker, R. R.; Joyce, G. F. Chem. Biol. 1994, 1, 223-229
3. Schlosser, K.; Li, Y. F. Chem. Biol. 2009, 16, 311-322
4. Lu, Y. Chem.-Eur. J. 2002, l 8, 4588-4596
5. Deuss, P. J.; den Heeten, R.; Laan, W.; Kamer, P. C. J. Chem.-Eur. J. 2011, 17, 4680-4698
6. Breaker, R. R. Nature 2004, 432, 838-845
7. Pyle, A. M.; Chu, V. T.; Jankowsky, E.; Boudvillain, H. Method Enzymol. 2000, 317, 140-146
8. Peracchi, A. Rev. Med. Virol. 2004, 14, 47-64
9. Mirkin, C. A.; Letsinger, R. L.; Mucic, R. C.; Storhoff, J. J. Nature 1996, 382, 607-609
10. Liu, J. W.; Lu, Y. J. Am. Chem. Soc. 2003, 125, 6642-6643
11. Chen, Y.; Wang, M. S.; Mao, C. D. Angew. Chem., Int. Ed. 2004, 43, 3554-3557
12. Teller, C.; Willner, I. Curr. Opin. Biotechnol. 2010, 21, 376-391
13. Lu, Y.; Liu, J. W. Curr. Opin. Biotechnol. 2006, 17, 580-588
14. Li, Y. F.; Lu, Y. Functional Nucleic Acids for Sensing and Other Analytical Applications; Springer: New York, 2009.
15. Liu, J. W.; Cao, Z. H.; Lu, Y. Chem. Rev. 2009, 109, 1948-1998
16. Willner, I.; Shlyahovsky, B.; Zayats, M.; Willner, B. Chem. Soc. Rev. 2008, 37, 1153-1165
17. Navani, N. K.; Li, Y. F. Curr. Opin. Chem. Biol. 2006, 10, 272-281
18. Mei, S. H. J.; Liu, Z. J.; Brennan, J. D.; Li, Y. F. J. Am. Chem. Soc. 2003, 125, 412-420
19. Li, J.; Lu, Y. J. Am. Chem. Soc. 2000, 122, 10466-10467
20. Xiao, Y.; Rowe, A. A.; Plaxco, K. W. J. Am. Chem. Soc. 2007, 129, 262-263
21. Li, T.; Dong, S. J.; Wang, E. K. J. Am. Chem. Soc. 2010, 132, 13156-13157
22. Xiang, Y.; Tong, A. J.; Lu, Y. J. Am. Chem. Soc. 2009, 131, 15352-15357
23. Xiang, Y.; Wang, Z. D.; Xing, H.; Wong, N. Y.; Lu, Y. Anal. Chem. 2010, 82, 4122-4129
24. Liu, J. W.; Brown, A. K.; Meng, X. L.; Cropek, D. M.; Istok, J. D.; Watson, D. B.; Lu, Y. Proc. Nat. Acad. Sci. U.S.A. 2007, 104, 2056-2061
25. Brown, A. K.; Liu, J. W.; He, Y.; Lu, Y. ChemBioChem 2009, 10, 486-492
26. Xiang, Y.; Lu, Y. Nat. Chem. 2011, 3, 697-703
27. Liu, J. W.; Lu, Y. J. Am. Chem. Soc. 2007, 129, 9838-9839
28. Liu, J. W.; Lu, Y. Chem. Commum. 2007, 4872-4874
29. Liu, J. W.; Lu, Y. Angew. Chem., Int. Ed. 2007, 46, 7587-7590
30. Hollenstein, M.; Hipolito, C.; Lam, C.; Dietrich, D.; Perrin, D. M. Angew. Chem., Int. Ed. 2008, 47, 4346-4350
31. Elbaz, J.; Shlyahovsky, B.; Willner, I. Chem. Commun. 2008, 1569-1571
32. Kong, R. M.; Zhang, X. B.; Chen, Z.; Meng, H. M.; Song, Z. L.; Tan, W. H.; Shen, G. L.; Yu, R. Q. Anal. Chem. 2011, 83, 7603-7607
33. Nakayama, S.; Sintim, H. O. J. Am. Chem. Soc. 2009, 131, 10320-10333
34. Wang, F. A.; Elbaz, J.; Teller, C.; Willner, I. Angew. Chem., Int. Ed. 2011, 50, 295-299
35. Ali, M. M.; Aguirre, S. D.; Lazim, H.; Li, Y. F. Angew. Chem., Int. Ed. 2011, 50, 3751-3754
36. Vinkenborg, J. L.; Karnowski, N.; Famulok, M. Nat. Chem. Biol. 2011, 7, 519-527
37. Famulok, M.; Hartig, J. S.; Mayer, G. Chem. Rev. 2007, 107, 3715-3743
38. Zhang, L. L.; Zhao, J. J.; Jiang, J. H.; Yu, R. Q. Chem. Commun. 2012, 48, 8820-8822
39. Stivers, J. T.; Jiang, Y. L. Chem. Rev. 2003, 103, 2729-2759
40. Parikh, S. S.; Walcher, G.; Jones, G. D.; Slupphaug, G.; Krokan, H. E.; Blackburn, G. M.; Tainer, J. A. Proc. Nat. Acad. Sci. U.S.A. 2000, 97, 5083-5088
41. Seal, G.; Brech, K.; Karp, S. J.; Cool, B. L.; Sirover, M. A. Proc. Nat. Acad. Sci. U.S.A. 1988, 85, 2339-2343
42. Bulgar, A. D.; Weeks, L. D.; Miao, Y.; Yang, S.; Xu, Y.; Guo, C.; Markowitz, S.; Oleinick, N.; Gerson, S. L.; Liu, L. Cell. Death. Dis. 2012, 3, e252
43. Stivers, J. T. Nucleic Acids Res. 1998, 26, 3837-3844
44. Anders, C. K.; Winer, E. P.; Ford, J. M.; Dent, R.; Silver, D. P.; Sledge, G. W.; Carey, L. A. Clin. Cancer. Res. 2010, 16, 4702-4710
45. Krokan, H.; Wittwer, C. U. Nucleic Acids Res. 1981, 9, 2599-2613
46. Ischenko, A. A.; Saparbaev, M. K. Nature 2002, 415, 183-187
47. Tchou, J.; Kasai, H.; Shibutani, S.; Chung, M. H.; Laval, J.; Grollman, A. P.; Nishimura, S. Proc. Nat. Acad. Sci. U.S.A. 1991, 88, 4690-4694
48. Bellamy, S. R. W.; Krusong, K.; Baldwin, G. S. Nucleic Acids Res. 2007, 35, 1478-1487
49. Liu, B.; Yang, X. H.; Wang, K. M.; Tan, W. H.; Li, H. M.; Tang, H. X. Anal. Biochem. 2007, 366, 237-243
50. Yang, X.; Tong, C. Y.; Long, Y.; Liu, B. Mol. Cell. Probe 2011, 25, 219-221
51. Ono, T.; Wang, S. L.; Koo, C. K.; Engstrom, L.; David, S. S.; Kool, E. T. Angew. Chem., Int. Ed. 2012, 51, 1689-1692
52. Li, J.; Zheng, W. C.; Kwon, A. H.; Lu, Y. Nucleic Acids Res. 2000, 28, 481-488
53. Brown, A. K.; Li, J.; Pavot, C. M. B.; Lu, Y. Biochemistry 2003, 42, 7152-7161
54. Cruz, R. P. G.; Withers, J. B.; Li, Y. F. Chem. Biol. 2004, 11, 57-67
55. Santoro, S. W.; Joyce, G. F. Proc. Nat. Acad. Sci. U.S.A. 1997, 94, 4262-4266
56. Wang, B.; Cao, L. Q.; Chiuman, W.; Li, Y. F.; Xi, Z. Biochemistry 2010, 49, 7553-7562
57. Zhang, X. B.; Wang, Z. D.; Xing, H.; Xiang, Y.; Lu, Y. Anal. Chem. 2010, 82, 5005-5011