메뉴 건너뛰기




Volumn 146, Issue 7, 2000, Pages 1707-1715

Arrangement and regulation of the genes for meta-pathway enzymes required for degradation of phenol in Comamonas testosteroni TA441

Author keywords

Biodegradation; Comamonas testosteroni; Meta pathway; Phenol

Indexed keywords

ALDEHYDE DERIVATIVE; BACTERIAL ENZYME; CATECHOL; PHENOL;

EID: 0033910753     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/00221287-146-7-1707     Document Type: Article
Times cited : (73)

References (34)
  • 1
    • 0031733597 scopus 로고    scopus 로고
    • Adaptation of Comamonas testosteroni TA441 to utilize phenol : Organization and regulation of the genes involved in phenol degradation
    • Arai, H., Akahira, S., Ohishi, T., Maeda, M. & Kudo, T. (1998). Adaptation of Comamonas testosteroni TA441 to utilize phenol : organization and regulation of the genes involved in phenol degradation. Microbiology 144, 2895-2903.
    • (1998) Microbiology , vol.144 , pp. 2895-2903
    • Arai, H.1    Akahira, S.2    Ohishi, T.3    Maeda, M.4    Kudo, T.5
  • 2
    • 0032825377 scopus 로고    scopus 로고
    • Adaptation of Comamonas testosterone TA441 to utilization of phenol by spontaneous mutation of the gene for a trans-acting factor
    • Arai, H., Akahira, S., Ohishi, T. & Kudo, T. (1999a). Adaptation of Comamonas testosterone TA441 to utilization of phenol by spontaneous mutation of the gene for a trans-acting factor. Mol Microbiol 33, 1132-1140.
    • (1999) Mol Microbiol , vol.33 , pp. 1132-1140
    • Arai, H.1    Akahira, S.2    Ohishi, T.3    Kudo, T.4
  • 3
    • 0032866061 scopus 로고    scopus 로고
    • Genetic organization and characteristics of the 3-(3-hydroxyphenyl)propionic acid degradation pathway from Comamonas testosteroni TA441
    • Arai, H., Yamamoto, T., Ohishi, T., Shimizu,T., Nakata, T. & Kudo, T. (1999b). Genetic organization and characteristics of the 3-(3-hydroxyphenyl)propionic acid degradation pathway from Comamonas testosteroni TA441. Microbiology 145, 2813-2820.
    • (1999) Microbiology , vol.145 , pp. 2813-2820
    • Arai, H.1    Yamamoto, T.2    Ohishi, T.3    Nakata, T.4    Kudo, T.5
  • 4
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantisation of microgram quantities of prorein utilizing the principle of protein-dye binding
    • Bradford, M. M. (1976). A rapid and sensitive method for the quantisation of microgram quantities of prorein utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254.
    • (1976) Anal Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 5
    • 0027389217 scopus 로고
    • Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocatechol opcron in Pseudomonas putida
    • Coco, W. M., Rothmel, R. K., Henikoff, S. & Chakrabarty, A. M. (1993). Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocatechol opcron in Pseudomonas putida. J Bacteriol 175, 417-427.
    • (1993) J Bacteriol , vol.175 , pp. 417-427
    • Coco, W.M.1    Rothmel, R.K.2    Henikoff, S.3    Chakrabarty, A.M.4
  • 6
    • 0029083167 scopus 로고
    • Biochemical and molecular characterization of the oxidative branch of glycerol utilization by Citrobacter freundii
    • Daniel, R., Stuertz, K. & Gottschalk, G (1995). Biochemical and molecular characterization of the oxidative branch of glycerol utilization by Citrobacter freundii. J Bacteriol 177, 4392-4401.
    • (1995) J Bacteriol , vol.177 , pp. 4392-4401
    • Daniel, R.1    Stuertz, K.2    Gottschalk, G.3
  • 7
    • 0026766452 scopus 로고
    • Nucleotide sequencing and transcriptional mapping of genes encoding biphenyl dioxygenase, a multicomponent PCB-degrading enzyme in Pseudomonas strain LB400
    • Erickson, B. D. & Mondello, F. J. (1992). Nucleotide sequencing and transcriptional mapping of genes encoding biphenyl dioxygenase, a multicomponent PCB-degrading enzyme in Pseudomonas strain LB400. J Bacteriol 174, 2903-1912.
    • (1992) J Bacteriol , vol.174 , pp. 2903-11912
    • Erickson, B.D.1    Mondello, F.J.2
  • 8
    • 0023374169 scopus 로고
    • Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation
    • Frantz, B. & Chakrabarty, A. M. (1987). Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation. Proc Natl Acad Sci USA 84, 4460-4464.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 4460-4464
    • Frantz, B.1    Chakrabarty, A.M.2
  • 9
    • 0032942360 scopus 로고    scopus 로고
    • NahY, a catabolic plasmid-encoding receptor required for chemotaxis of Pseudomonas putida to the aromatic hydrocarbon naphthalene
    • Grimm, A. C. & Harwood, C. S.(1999). NahY, a catabolic plasmid-encoding receptor required for chemotaxis of Pseudomonas putida to the aromatic hydrocarbon naphthalene. J Bacteriol 181, 3310-3316.
    • (1999) J Bacteriol , vol.181 , pp. 3310-3316
    • Grimm, A.C.1    Harwood, C.S.2
  • 10
    • 0025318026 scopus 로고
    • The meta cleavage operon of TOL degradative plasmid pWWO comprises 13 genes
    • Harayama, S. & Rekik, M. (1990). The meta cleavage operon of TOL degradative plasmid pWWO comprises 13 genes. Mol Gen Genet 221, 113-120.
    • (1990) Mol Gen Genet , vol.221 , pp. 113-120
    • Harayama, S.1    Rekik, M.2
  • 11
    • 0024457019 scopus 로고
    • Physically associated enzymes produce and metabolize 2-hydroxypent-2,4-dienoate, a chemically unstable intermediate formed in catechol metabolism via meta cleavage in Pseudomonas putida
    • Harayama, S., Rekik, M., Ngai, K.-L. &Ornston, L. N. (1989). Physically associated enzymes produce and metabolize 2-hydroxypent-2,4-dienoate, a chemically unstable intermediate formed in catechol metabolism via meta cleavage in Pseudomonas putida. J Bacteriol 171, 6251-6258.
    • (1989) J Bacteriol , vol.171 , pp. 6251-6258
    • Harayama, S.1    Rekik, M.2    Ngai, K.-L.3    Ornston, L.N.4
  • 12
    • 0027968260 scopus 로고
    • Sequence and expression of the todGIH genes involved in the last three steps of toluene degradation by Pseudomonas putida F1
    • Lau, P. C., Bergeron, H., Labbe, D., Wang, Y., Brousseau, R. & Gibson, D. T. (1994). Sequence and expression of the todGIH genes involved in the last three steps of toluene degradation by Pseudomonas putida F1. Gene 146, 7-13.
    • (1994) Gene , vol.146 , pp. 7-13
    • Lau, P.C.1    Bergeron, H.2    Labbe, D.3    Wang, Y.4    Brousseau, R.5    Gibson, D.T.6
  • 13
    • 0025707308 scopus 로고
    • Comparison of promoter activities in Escherichia coli and Pseudomonas aeruginosa: Use of a new broad-host-range promoter-probe plasmid
    • Lodge, J., Williams, R., Bell, A., Chan, B. & Busby, S. (1990). Comparison of promoter activities in Escherichia coli and Pseudomonas aeruginosa: use of a new broad-host-range promoter-probe plasmid. FEMS Microbiol Lett 67, 221-226.
    • (1990) FEMS Microbiol Lett , vol.67 , pp. 221-226
    • Lodge, J.1    Williams, R.2    Bell, A.3    Chan, B.4    Busby, S.5
  • 14
    • 0030974367 scopus 로고    scopus 로고
    • 2-Chloromuconate and ClcR-mediated activation of the clcABC. Operon : In vitro transcriptional and DNase I footprint analyses
    • McFall, S. M., Parsek, M. R. & Chakrabarty, A. M. (1997). 2-Chloromuconate and ClcR-mediated activation of the clcABC. operon : in vitro transcriptional and DNase I footprint analyses. J Bacteriol 179, 3655-3663.
    • (1997) J Bacteriol , vol.179 , pp. 3655-3663
    • McFall, S.M.1    Parsek, M.R.2    Chakrabarty, A.M.3
  • 15
    • 0032570608 scopus 로고    scopus 로고
    • Characterisation of the urease gene cluster in Bordetella bronchiseptica
    • McMillan, D. J., Mau, M. & Walker, M. J. (1998). Characterisation of the urease gene cluster in Bordetella bronchiseptica. Gene 208, 243-251.
    • (1998) Gene , vol.208 , pp. 243-251
    • McMillan, D.J.1    Mau, M.2    Walker, M.J.3
  • 16
    • 0033064439 scopus 로고    scopus 로고
    • Conversion of 3-chlorocatechol by various catechol 2,3-dioxygenases and sequence analysis of the chlorocatechol dioxygenase region of Pseudomonas putida GJ31
    • Mars, A. E., Kingma, J., Kaschabek, S. R., Reineke, W. & Janssen, D. B. (1999). Conversion of 3-chlorocatechol by various catechol 2,3-dioxygenases and sequence analysis of the chlorocatechol dioxygenase region of Pseudomonas putida GJ31. J Bacteriol 181, 1309-1318.
    • (1999) J Bacteriol , vol.181 , pp. 1309-1318
    • Mars, A.E.1    Kingma, J.2    Kaschabek, S.R.3    Reineke, W.4    Janssen, D.B.5
  • 17
    • 0025806414 scopus 로고
    • Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: Evidence for specialization of catechol 1,2-dioxygenases for chlorinated substrates
    • van der Meer, J. R., Eggen, R. I., Zehnder, A. J. & de Vos, W. M. (1991a). Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: evidence for specialization of catechol 1,2-dioxygenases for chlorinated substrates. J Bacteriol 173, 2425-2434.
    • (1991) J Bacteriol , vol.173 , pp. 2425-2434
    • Van Der Meer, J.R.1    Eggen, R.I.2    Zehnder, A.J.3    De Vos, W.M.4
  • 18
    • 0025740524 scopus 로고
    • Characterization of the Pseudomonas sp. strain P5I gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory region
    • van der Meer, J. R., Frijters, A. C., Leveau, J. H., Eggen, R. I., Zehnder, A. J. & de Vos, W. M. (1991b). Characterization of the Pseudomonas sp. strain P5I gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory region. J Bacteriol 173, 3700-3708.
    • (1991) J Bacteriol , vol.173 , pp. 3700-3708
    • Van Der Meer, J.R.1    Frijters, A.C.2    Leveau, J.H.3    Eggen, R.I.4    Zehnder, A.J.5    De Vos, W.M.6
  • 20
    • 0030955228 scopus 로고    scopus 로고
    • Testosterone-regulated expression of enzymes in volved in steroid and aromatic hydrocarbon catabolism in Comamonas testosteroni
    • Möbus, Jahn, M., Schmid, R., Jahn, D. & Maser, E. (1997). Testosterone-regulated expression of enzymes in volved in steroid and aromatic hydrocarbon catabolism in Comamonas testosteroni. J Bacteriol 179, 5951-5955.
    • (1997) J Bacteriol , vol.179 , pp. 5951-5955
    • Möbus, E.1    Jahn, M.2    Schmid, R.3    Jahn, D.4    Maser, E.5
  • 21
    • 0031454105 scopus 로고    scopus 로고
    • Cloning and sequence analysis of a catechol 2,3-dioxygenase gene from the nitrobenzene-degrading strain Comamonas sp. JS765
    • Parales, R. E., Ontl, T. A. & Gibson, D. T. (1997). Cloning and sequence analysis of a catechol 2,3-dioxygenase gene from the nitrobenzene-degrading strain Comamonas sp. JS765. J Ind Microbiol Biotechnol 19, 385-391.
    • (1997) J Ind Microbiol Biotechnol , vol.19 , pp. 385-391
    • Parales, R.E.1    Ontl, T.A.2    Gibson, D.T.3
  • 22
    • 0026495342 scopus 로고
    • Roles of CatR and cis,cis-muconate in activation of the CatRC operon, which is involved in benzoate degradation in Pseudomonas putida
    • Parsek, M. E., Shinabarger, D. L., Rothmel, R. K. & Chakrabarty, A. M. (1992). Roles of CatR and cis,cis-muconate in activation of the CatRC operon, which is involved in benzoate degradation in Pseudomonas putida. J Bacteriol 174, 7798-7806.
    • (1992) J Bacteriol , vol.174 , pp. 7798-7806
    • Parsek, M.E.1    Shinabarger, D.L.2    Rothmel, R.K.3    Chakrabarty, A.M.4
  • 23
    • 0028672047 scopus 로고
    • Genetics and biochemistry of phenol degradation by Peudomonas sp. CH600
    • Powlowski, J. & Shingler, V. (1994). Genetics and biochemistry of phenol degradation by Peudomonas sp. CH600. Biodegradation 5, 219-236.
    • (1994) Biodegradation , vol.5 , pp. 219-236
    • Powlowski, J.1    Shingler, V.2
  • 24
    • 0025139202 scopus 로고
    • Nucleotide sequencing and characterization of Pseudomonas putida catR: A positive regulator of the catBC operon is a member of the lysR family
    • Rothmel, R. K., Aldrich, T. L., Houghton, J. E., Coco, W. M., Ornston, L. N. & Chakrabarty, A. M. (1990). Nucleotide sequencing and characterization of Pseudomonas putida catR: a positive regulator of the catBC operon is a member of the lysR family. J Bacteriol 172, 922-931.
    • (1990) J Bacteriol , vol.172 , pp. 922-931
    • Rothmel, R.K.1    Aldrich, T.L.2    Houghton, J.E.3    Coco, W.M.4    Ornston, L.N.5    Chakrabarty, A.M.6
  • 25
    • 0030198501 scopus 로고    scopus 로고
    • Characterization and distribution of tartrate utilization genes in the grapevine pathogen Agrobacterinm vitis
    • Salomone, J.-Y., Crouzet, P., De Ruffray, P. & Otten, L. (1996). Characterization and distribution of tartrate utilization genes in the grapevine pathogen Agrobacterinm vitis. Mol Plant-Microbe Interact 9, 401-408.
    • (1996) Mol Plant-Microbe Interact , vol.9 , pp. 401-408
    • Salomone, J.-Y.1    Crouzet, P.2    De Ruffray, P.3    Otten, L.4
  • 27
    • 0000276955 scopus 로고    scopus 로고
    • Metabolic and regulatory cheek points in phenol degradation by Pseudomonas sp. CF600
    • Edited by T. Nakazawa, K. Furukawa, D. Haas & S. Silver. Washington, DC: American Society for Microbiology
    • Shingler, V. (1996). Metabolic and regulatory cheek points in phenol degradation by Pseudomonas sp. CF600. In Molecular Biology of Pseudomonas, pp. 153-154. Edited by T. Nakazawa, K. Furukawa, D. Haas & S. Silver. Washington, DC: American Society for Microbiology.
    • (1996) Molecular Biology of Pseudomonas , pp. 153-154
    • Shingler, V.1
  • 28
    • 0026567783 scopus 로고
    • Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600
    • Shingler, V., Powlowski, J. & Marklund, U. (1992). Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600. J Bacteriol 174, 711-724.
    • (1992) J Bacteriol , vol.174 , pp. 711-724
    • Shingler, V.1    Powlowski, J.2    Marklund, U.3
  • 29
    • 0027400541 scopus 로고
    • Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVII50 and identification of DmpR as a member of the NtrC family of transcriptional activators
    • Shingler, V., Bartilson, M. & Moore, T. (1993). Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVII50 and identification of DmpR as a member of the NtrC family of transcriptional activators. J Bacteriol 175, 1596-1604.
    • (1993) J Bacteriol , vol.175 , pp. 1596-1604
    • Shingler, V.1    Bartilson, M.2    Moore, T.3
  • 30
    • 0021205685 scopus 로고
    • High frequency mobilization of gram-negative bacterial replicons by the in vitro constructed Tn5-Mob transposon
    • Simon, R. (1984). High frequency mobilization of gram-negative bacterial replicons by the in vitro constructed Tn5-Mob transposon. Mol Gen Genet 196, 413-420.
    • (1984) Mol Gen Genet , vol.196 , pp. 413-420
    • Simon, R.1
  • 31
    • 0023191349 scopus 로고
    • Analysis, cloning, and high-level expression of 2,4-dichlorophenoxyacetate monooxygenase gene tfdA of Alcaligenes eutrophus JMPI34
    • Streber, W. R., Timmis, K. N. & Zenk, M. H. (1987). Analysis, cloning, and high-level expression of 2,4-dichlorophenoxyacetate monooxygenase gene tfdA of Alcaligenes eutrophus JMPI34. J Bactteriol 169, 2950-2955.
    • (1987) J Bactteriol , vol.169 , pp. 2950-2955
    • Streber, W.R.1    Timmis, K.N.2    Zenk, M.H.3
  • 32
    • 0028840131 scopus 로고
    • Metabolic pathway for biosynthesis of poly(3-hydroxybutyrate-co-4-hydro,\ybutyrate) from 4-hydroxyhutyrate by Alcaligenes entrophus
    • Valentin, H. E., Zwingmann, G., Schonebaum, A. & Steinbüchel, A. (1995). Metabolic pathway for biosynthesis of poly(3-hydroxybutyrate-co-4-hydro,\ybutyrate) from 4-hydroxyhutyrate by Alcaligenes entrophus. Eur J Biochem 227, 43-60.
    • (1995) Eur J Biochem , vol.227 , pp. 43-60
    • Valentin, H.E.1    Zwingmann, G.2    Schonebaum, A.3    Steinbüchel, A.4
  • 33
    • 0016214823 scopus 로고
    • Pseudomoiuis pntida mutants defective in metabolism of the products of metafission of catechol and its methyl analogues
    • Wigmore, H. J., Bayly, R. C. & Berardino, D. (1974). Pseudomoiuis pntida mutants defective in metabolism of the products of metafission of catechol and its methyl analogues. J Bacteriol 120, 31-37.
    • (1974) J Bacteriol , vol.120 , pp. 31-37
    • Wigmore, H.J.1    Bayly, R.C.2    Berardino, D.3
  • 34
    • 0342872072 scopus 로고    scopus 로고
    • Novel organization of catechol meta-pathway genes in Sphingainontis sp. HV3 pSKY4 plasmid
    • Yrjälä, K., Paulin, L. & Romantschuk, M. (1997). Novel organization of catechol meta-pathway genes in Sphingainontis sp. HV3 pSKY4 plasmid. FEMS Microbiol Lett 154, 403-408.
    • (1997) FEMS Microbiol Lett , vol.154 , pp. 403-408
    • Yrjälä, K.1    Paulin, L.2    Romantschuk, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.