-
1
-
-
0037435030
-
Mass spectrometry-based proteomics
-
DOI 10.1038/nature01511
-
Aebersold R, Mann M. Mass spectrometry-based proteomics. Nature. 2003;422:198-207. (Pubitemid 36362757)
-
(2003)
Nature
, vol.422
, Issue.6928
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
2
-
-
0038106628
-
Mass spectrom-etry-based clinical proteomics
-
Pusch W, Flocco MT, Leung SM, Thiele H, Kostrzewa M. Mass spectrom-etry-based clinical proteomics. Pharmacogenomics. 2003;4:463-476.
-
(2003)
Pharmacogenomics
, vol.4
, pp. 463-476
-
-
Pusch, W.1
Flocco, M.T.2
Leung, S.M.3
Thiele, H.4
Kostrzewa, M.5
-
3
-
-
33644524918
-
Mass spectrometry-based proteomics turns quantitative
-
Ong SE, Mann M. Mass spectrometry-based proteomics turns quantitative. Nat Chem Biol. 2005;1:252-262.
-
(2005)
Nat Chem Biol.
, vol.1
, pp. 252-262
-
-
Ong, S.E.1
Mann, M.2
-
4
-
-
36549056499
-
Two-dimensional polyacrylamide gel electrophoresis for cardiovascular proteomics
-
DOI 10.1385/1-59745-214-9:3, Cardiovascular Proteomics: Methods and Protocols
-
Dunn MJ. Two-dimensional polyacrylamide gel electrophoresis for cardiovascular proteomics. Methods Mol Biol. 2007;357:3-13. (Pubitemid 350183233)
-
(2007)
Methods in Molecular Biology
, vol.357
, pp. 3-13
-
-
Dunn, M.J.1
-
5
-
-
0027198862
-
Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases
-
Henzel WJ, Billeci TM, Stults JT, Wong SC, Grimley C, Watanabe C. Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc Natl Acad Sci U|S|A. 1993;90:5011-5015. (Pubitemid 23182965)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.11
, pp. 5011-5015
-
-
Henzel, W.J.1
Billeci, T.M.2
Stults, J.T.3
Wong, S.C.4
Grimley, C.5
Watanabe, C.6
-
6
-
-
0036208433
-
Two-dimensional gel electrophoresis in proteomics: Old, old fashioned, but it still climbs up the mountains
-
DOI 10.1002/1615-9861(200201)2:1<3::AID-PROT3>3.0.CO;2-R
-
Rabilloud T. Two-dimensional gel electrophoresis in proteomics: old, old fashioned, but it still climbs up the mountains. Proteomics. 2002;2:3-10. (Pubitemid 34273093)
-
(2002)
Proteomics
, vol.2
, Issue.1
, pp. 3-10
-
-
Rabilloud, T.1
-
7
-
-
34547905871
-
State-of-the-art two-dimensional gel electrophoresis: A key tool of proteomics research
-
Carrette O, Burkhard PR, Sanchez JC, Hochstrasser DF. State-of-the-art two-dimensional gel electrophoresis: a key tool of proteomics research. Nat Protoc. 2006;1:812-823.
-
(2006)
Nat Protoc.
, vol.1
, pp. 812-823
-
-
Carrette, O.1
Burkhard, P.R.2
Sanchez, J.C.3
Hochstrasser, D.F.4
-
8
-
-
12344316044
-
Combination of two-dimensional electrophoresis and shotgun peptide sequencing in comparative proteomics
-
DOI 10.1016/j.jchromb.2004.10.030, PII S1570023204008244, Proteomic Database Part III
-
Kubota K, Kosaka T, Ichikawa K. Combination of two-dimensional elec-trophoresis and shotgun peptide sequencing in comparative proteomics. J Chromatogr B Analyt Technol Biomed Life Sci. 2005;815:3-9. (Pubitemid 40126388)
-
(2005)
Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences
, vol.815
, Issue.1-2
, pp. 3-9
-
-
Kubota, K.1
Kosaka, T.2
Ichikawa, K.3
-
9
-
-
6044257405
-
Two-dimensional polyacrylamide gel electrophore-sis for platelet proteomics
-
Marcus K, Meyer HE. Two-dimensional polyacrylamide gel electrophore-sis for platelet proteomics. Methods Mol Biol. 2004;273:421-434.
-
(2004)
Methods Mol Biol.
, vol.273
, pp. 421-434
-
-
Marcus, K.1
Meyer, H.E.2
-
10
-
-
21244495253
-
The development of the DIGE system: 2D fluorescence difference gel analysis technology
-
DOI 10.1007/s00216-005-3126-3
-
Marouga R, David S, Hawkins E. The development of the DIGE system:2D fuorescence difference gel analysis technology. Anal Bioanal Chem. 2005;382:669-678. (Pubitemid 40890994)
-
(2005)
Analytical and Bioanalytical Chemistry
, vol.382
, Issue.3
, pp. 669-678
-
-
Marouga, R.1
David, S.2
Hawkins, E.3
-
11
-
-
0343376097
-
Difference gel electrophoresis: A single gel method for detecting changes in protein extracts
-
Unlu M, Morgan ME, Minden JS. Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis. 1997;18:2071-2077. (Pubitemid 27501267)
-
(1997)
Electrophoresis
, vol.18
, Issue.11
, pp. 2071-2077
-
-
Unlu, M.1
Morgan, M.E.2
Minden, J.S.3
-
12
-
-
75149149381
-
Identification of cardiac myosin-binding protein C as a candidate biomarker of myocardial infarction by proteomics analysis
-
Jacquet S, Yin S, Sicard P, Clark J, Kanaganayagam GS, Mayr M, Marber MS. Identification of cardiac myosin-binding protein C as a candidate biomarker of myocardial infarction by proteomics analysis. Mol Cell Proteomics. 2009;8:2687-2699.
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 2687-2699
-
-
Jacquet, S.1
Yin, S.2
Sicard, P.3
Clark, J.4
Kanaganayagam, G.S.5
Mayr, M.6
Marber, M.S.7
-
13
-
-
66749100634
-
Alterations of mitochondrial enzymes contribute to cardiac hypertrophy before hypertension development in spontaneously hypertensive rats
-
Meng C, Jin X, Xia L, Shen SM, Wang XL, Cai J, Chen GQ, Wang LS, Fang N Y, et al. Alterations of mitochondrial enzymes contribute to cardiac hypertrophy before hypertension development in spontaneously hypertensive rats. J Proteome Res. 2009;8:2463-2475.
-
(2009)
J Proteome Res.
, vol.8
, pp. 2463-2475
-
-
Meng, C.1
Jin, X.2
Xia, L.3
Shen, S.M.4
Wang, X.L.5
Cai, J.6
Chen, G.Q.7
Wang, L.S.8
Fang, N.Y.9
-
14
-
-
58149279280
-
Proteomic and metabolomic analysis of cardioprotection: Interplay between protein kinase C epsilon and delta in regulating glucose metabolism of murine hearts
-
Mayr M, Liem D, Zhang J, Li X, Avliyakulov NK, Yang JI, Young G, Vondriska TM, Ladroue C, Madhu B, Griffiths JR, Gomes A, Xu Q, Ping P. Proteomic and metabolomic analysis of cardioprotection: Interplay between protein kinase C epsilon and delta in regulating glucose metabolism of murine hearts. J Mol Cell Cardiol. 2009;46:268-277.
-
(2009)
J Mol Cell Cardiol.
, vol.46
, pp. 268-277
-
-
Mayr, M.1
Liem, D.2
Zhang, J.3
Li, X.4
Avliyakulov, N.K.5
Yang, J.I.6
Young, G.7
Vondriska, T.M.8
Ladroue, C.9
Madhu, B.10
Griffiths, J.R.11
Gomes, A.12
Xu, Q.13
Ping, P.14
-
15
-
-
33750113347
-
Myosin binding protein C is differentially phosphorylated upon myocardial stunning in canine and rat hearts-evidence for novel phosphorylation sites
-
Yuan C, Guo Y, Ravi R, Przyklenk K, Shilkofski N, Diez R, Cole RN, Murphy AM. Myosin binding protein C is differentially phosphorylated upon myocardial stunning in canine and rat hearts-evidence for novel phosphorylation sites. Proteomics. 2006;6:4176-4186.
-
(2006)
Proteomics
, vol.6
, pp. 4176-4186
-
-
Yuan, C.1
Guo, Y.2
Ravi, R.3
Przyklenk, K.4
Shilkofski, N.5
Diez, R.6
Cole, R.N.7
Murphy, A.M.8
-
16
-
-
79960820563
-
Rapid proteomic remodeling of cardiac tissue caused by total body ionizing radiation
-
Azimzadeh O, Scherthan H, Sarioglu H, Barjaktarovic Z, Conrad M, Vogt A, Calzada-Wack J, Neff F, Aubele M, Buske C, Atkinson MJ, Tapio S. Rapid proteomic remodeling of cardiac tissue caused by total body ionizing radiation. Proteomics. 2011;11:3299-3311.
-
(2011)
Proteomics
, vol.11
, pp. 3299-3311
-
-
Azimzadeh, O.1
Scherthan, H.2
Sarioglu, H.3
Barjaktarovic, Z.4
Conrad, M.5
Vogt, A.6
Calzada-Wack, J.7
Neff, F.8
Aubele, M.9
Buske, C.10
Atkinson, M.J.11
Tapio, S.12
-
17
-
-
55249116799
-
Quantitative analysis of redox-sensitive proteome with DIGE and ICAT
-
Fu C, Hu J, Liu T, Ago T, Sadoshima J, Li H. Quantitative analysis of redox-sensitive proteome with DIGE and ICAT. J Proteome Res. 2008;7:3789-3802.
-
(2008)
J Proteome Res.
, vol.7
, pp. 3789-3802
-
-
Fu, C.1
Hu, J.2
Liu, T.3
Ago, T.4
Sadoshima, J.5
Li, H.6
-
19
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, Mann M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics. 2002;1:376-386.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
20
-
-
34247396011
-
A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)
-
Ong SE, Mann M. A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nat Protoc. 2006;1:2650-2660.
-
(2006)
Nat Protoc.
, vol.1
, pp. 2650-2660
-
-
Ong, S.E.1
Mann, M.2
-
21
-
-
44949154755
-
Stable isotope labeling of mammals (SILAM)
-
McClatchy DB, Yates JR 3rd. Stable Isotope Labeling of Mammals (SILAM). CSH Protoc. 2008; pdb prot4940.
-
(2008)
CSH Protoc.
, pp. 4940
-
-
McClatchy, D.B.1
Yates III, J.R.2
-
22
-
-
34249335982
-
15N metabolic labeling of mammalian tissue with slow protein turnover
-
DOI 10.1021/pr060599n
-
McClatchy DB, Dong MQ, Wu CC, Venable JD, Yates JR 3rd. 15N metabolic labeling of mammalian tissue with slow protein turnover. J Proteome Res. 2007;6:2005-2010. (Pubitemid 46814521)
-
(2007)
Journal of Proteome Research
, vol.6
, Issue.5
, pp. 2005-2010
-
-
McClatchy, D.B.1
Dong, M.-Q.2
Wu, C.C.3
Venable, J.D.4
Yates III, J.R.5
-
23
-
-
79251648840
-
Differential pro-teomic analysis of mammalian tissues using SILAM
-
McClatchy DB, Liao L, Park SK, Xu T, Lu B, Yates JR 3rd. Differential pro-teomic analysis of mammalian tissues using SILAM. PLoS One. 2011;6:e16039.
-
(2011)
PLoS One.
, vol.6
-
-
McClatchy, D.B.1
Liao, L.2
Park, S.K.3
Xu, T.4
Lu, B.5
Yates III, J.R.6
-
24
-
-
58149385852
-
Quantitative analysis of brain nuclear phosphoproteins identifies developmentally regulated phosphorylation events
-
Liao L, McClatchy DB, Park SK, Xu T, Lu B, Yates JR 3rd. Quantitative analysis of brain nuclear phosphoproteins identifies developmentally regulated phosphorylation events. J Proteome Res. 2008;7:4743-4755.
-
(2008)
J Proteome Res.
, vol.7
, pp. 4743-4755
-
-
Liao, L.1
McClatchy, D.B.2
Park, S.K.3
Xu, T.4
Lu, B.5
Yates III, J.R.6
-
25
-
-
47549099572
-
SILAC Mouse for Quantitative Proteomics Uncovers Kindlin-3 as an Essential Factor for Red Blood Cell Function
-
DOI 10.1016/j.cell.2008.05.033, PII S0092867408006958
-
Kruger M, Moser M, Ussar S, Thievessen I, Luber CA, Forner F, Schmidt S, Zanivan S, Fässler R, Mann M. SILAC mouse for quantitative pro-teomics uncovers kindlin-3 as an essential factor for red blood cell function. Cell. 2008;134:353-364. (Pubitemid 352010327)
-
(2008)
Cell
, vol.134
, Issue.2
, pp. 353-364
-
-
Kruger, M.1
Moser, M.2
Ussar, S.3
Thievessen, I.4
Luber, C.A.5
Forner, F.6
Schmidt, S.7
Zanivan, S.8
Fassler, R.9
Mann, M.10
-
26
-
-
80054032557
-
In-depth quantitative cardiac proteomics combining electron transfer dissociation and the metalloendopeptidase Lys-N with the SILAC mouse
-
Scholten A, Mohammed S, Low TY, Zanivan S, Van Veen TA, Delanghe B, Heck AJ. In-depth quantitative cardiac proteomics combining electron transfer dissociation and the metalloendopeptidase Lys-N with the SILAC mouse. Mol Cell Proteomics. 2011;10:O111.008474.
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Scholten, A.1
Mohammed, S.2
Low, T.Y.3
Zanivan, S.4
Van Veen, T.A.5
Delanghe, B.6
Heck, A.J.7
-
27
-
-
77958018495
-
The SILAC fy allows for accurate protein quantification in vivo
-
Sury MD, Chen JX, Selbach M. The SILAC fy allows for accurate protein quantification in vivo. Mol Cell Proteomics. 2010;9:2173-2183.
-
(2010)
Mol Cell Proteomics
, vol.9
, pp. 2173-2183
-
-
Sury, M.D.1
Chen, J.X.2
Selbach, M.3
-
28
-
-
13244260803
-
A novel strategy for quantitative proteomics using isotope-coded protein labels
-
DOI 10.1002/pmic.200400873
-
Schmidt A, Kellermann J, Lottspeich F. A novel strategy for quantitative proteomics using isotope-coded protein labels. Proteomics. 2005;5:4-15. (Pubitemid 40189632)
-
(2005)
Proteomics
, vol.5
, Issue.1
, pp. 4-15
-
-
Schmidt, A.1
Kellermann, J.2
Lottspeich, F.3
-
29
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
DOI 10.1038/13690
-
Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, Aebersold R. Quantitative analysis of complex protein mixtures using isotope-coded affnity tags. Nat Biotechnol. 1999;17:994-999. (Pubitemid 29474856)
-
(1999)
Nature Biotechnology
, vol.17
, Issue.10
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
30
-
-
11144252625
-
Isotope-coded affinity tag (ICAT) approach to redox proteomics: Identification and quantitation of oxidant-sensitive cysteine thiols in complex protein mixtures
-
DOI 10.1021/pr049887e
-
Sethuraman M, McComb ME, Huang H, Huang S, Heibeck T, Costello CE, Cohen RA. Isotope-coded affnity tag (ICAT) approach to redox pro-teomics: identification and quantitation of oxidant-sensitive cysteine thi-ols in complex protein mixtures. J Proteome Res. 2004;3:1228-1233. (Pubitemid 40040377)
-
(2004)
Journal of Proteome Research
, vol.3
, Issue.6
, pp. 1228-1233
-
-
Sethuraman, M.1
McComb, M.E.2
Huang, H.3
Huang, S.4
Heibeck, T.5
Costello, C.E.6
Cohen, R.A.7
-
31
-
-
33846580480
-
Protein markers of ischemic insult in brain endothelial cells identified using 2D gel electrophoresis and ICAT-based quantitative proteomics
-
DOI 10.1021/pr0603811
-
Haqqani AS, Kelly J, Baumann E, Haseloff RF, Blasig IE, Stanimirovic DB. Protein markers of ischemic insult in brain endothelial cells identified using 2D gel electrophoresis and ICAT-based quantitative proteomics. J Proteome Res. 2007;6:226-239. (Pubitemid 46173675)
-
(2007)
Journal of Proteome Research
, vol.6
, Issue.1
, pp. 226-239
-
-
Haqqani, A.S.1
Kelly, J.2
Baumann, E.3
Haseloff, R.F.4
Blasig, I.E.5
Stanimirovic, D.B.6
-
32
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross PL, Huang YN, Marchese JN, Williamson B, Parker K, Hattan S, Khainovski N, Pillai S, Dey S, Daniels S, Purkayastha S, Juhasz P, Martin S, Bartlet-Jones M, He F, Jacobson A, Pappin DJ. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics. 2004;3:1154-1169.
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Martin, S.13
Bartlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
33
-
-
79959757195
-
Discovery of biomarker candidates for coronary artery disease from an APOE-knock out mouse model using iTRAQ-based multiplex quantitative proteomics
-
Jing L, Parker CE, Seo D, Hines MW, Dicheva N, Yu Y, Schwinn D, Ginsburg GS, Chen X. Discovery of biomarker candidates for coronary artery disease from an APOE-knock out mouse model using iTRAQ-based multiplex quantitative proteomics. Proteomics. 2011;11:2763-2776.
-
(2011)
Proteomics
, vol.11
, pp. 2763-2776
-
-
Jing, L.1
Parker, C.E.2
Seo, D.3
Hines, M.W.4
Dicheva, N.5
Yu, Y.6
Schwinn, D.7
Ginsburg, G.S.8
Chen, X.9
-
34
-
-
77953121217
-
Sub-proteomic fractionation, iTRAQ, and OFFGEL-LC-MS/MS approaches to cardiac proteomics
-
Warren CM, Geenen DL, Helseth DL Jr, Xu H, Solaro RJ. Sub-proteomic fractionation, iTRAQ, and OFFGEL-LC-MS/MS approaches to cardiac proteomics. J Proteomics. 2010;73:1551-1561.
-
(2010)
J Proteomics
, vol.73
, pp. 1551-1561
-
-
Warren, C.M.1
Geenen, D.L.2
Helseth Jr., D.L.3
Xu, H.4
Solaro, R.J.5
-
35
-
-
70350020470
-
Quantification of protein expression changes in the aging left ventricle of Rattus norvegicus
-
Grant JE, Bradshaw AD, Schwacke JH, Baicu CF, Zile MR, Schey KL. Quantification of protein expression changes in the aging left ventricle of Rattus norvegicus. J Proteome Res. 2009;8:4252-4263.
-
(2009)
J Proteome Res.
, vol.8
, pp. 4252-4263
-
-
Grant, J.E.1
Bradshaw, A.D.2
Schwacke, J.H.3
Baicu, C.F.4
Zile, M.R.5
Schey, K.L.6
-
36
-
-
67650261018
-
Milk fat globule protein epidermal growth factor-8: A pivotal relay element within the angiotensin II and monocyte chemoat-tractant protein-1 signaling cascade mediating vascular smooth muscle cells invasion
-
Fu Z, Wang M, Gucek M, Zhang J, Wu J, Jiang L, Monticone RE, Khazan B, Telljohann R, Mattison J, Sheng S, Cole RN, Spinetti G, Pintus G, Liu L, Kolodgie FD, Virmani R, Spurgeon H, Ingram DK, Everett AD, Lakatta EG, Van Eyk JE. Milk fat globule protein epidermal growth factor-8: A pivotal relay element within the angiotensin II and monocyte chemoat-tractant protein-1 signaling cascade mediating vascular smooth muscle cells invasion. Circulation Res. 2009;104:1337-1346.
-
(2009)
Circulation Res.
, vol.104
, pp. 1337-1346
-
-
Fu, Z.1
Wang, M.2
Gucek, M.3
Zhang, J.4
Wu, J.5
Jiang, L.6
Monticone, R.E.7
Khazan, B.8
Telljohann, R.9
Mattison, J.10
Sheng, S.11
Cole, R.N.12
Spinetti, G.13
Pintus, G.14
Liu, L.15
Kolodgie, F.D.16
Virmani, R.17
Spurgeon, H.18
Ingram, D.K.19
Everett, A.D.20
Lakatta, E.G.21
Van Eyk, J.E.22
more..
-
37
-
-
12444345515
-
Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
DOI 10.1021/ac0262560
-
Thompson A, Schaffer J, Kuhn K, Kienle S, Schwarz J, Schmidt G, Neumann T, Johnstone R, Mohammed AK, Hamon C. Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal Chem. 2003;75:1895-1904. (Pubitemid 36438013)
-
(2003)
Analytical Chemistry
, vol.75
, Issue.8
, pp. 1895-1904
-
-
Thompson, A.1
Schafer, J.2
Kuhn, K.3
Kienle, S.4
Schwarz, J.5
Schmidt, G.6
Neumann, T.7
Hamon, C.8
-
38
-
-
79951525817
-
Quantitative analysis of human cerebrospinal fuid proteins using a combination of cysteine tagging and amine-reactive isobaric labeling
-
Giron P, Dayon L, Turck N, Hoogland C, Sanchez JC. Quantitative analysis of human cerebrospinal fuid proteins using a combination of cysteine tagging and amine-reactive isobaric labeling. J Proteome Res. 2011;10:249-258.
-
(2011)
J Proteome Res.
, vol.10
, pp. 249-258
-
-
Giron, P.1
Dayon, L.2
Turck, N.3
Hoogland, C.4
Sanchez, J.C.5
-
39
-
-
74849138649
-
Combining low-and high-energy tandem mass spectra for optimized peptide quantif-cation with isobaric tags
-
Dayon L, Pasquarello C, Hoogland C, Sanchez JC, Scherl A. Combining low-and high-energy tandem mass spectra for optimized peptide quantif-cation with isobaric tags. J Proteomics. 2010;73:769-777.
-
(2010)
J Proteomics
, vol.73
, pp. 769-777
-
-
Dayon, L.1
Pasquarello, C.2
Hoogland, C.3
Sanchez, J.C.4
Scherl, A.5
-
40
-
-
79951635872
-
Improved precision of iTRAQ and TMT quantification by an axial extraction fibro in an Orbitrap HCD cell
-
Pichler P, Kocher T, Holzmann J, Mohring T, Ammerer G, Mechtler K. Improved precision of iTRAQ and TMT quantification by an axial extraction fibro in an Orbitrap HCD cell. Anal Chem. 2011;83:1469-1474.
-
(2011)
Anal Chem.
, vol.83
, pp. 1469-1474
-
-
Pichler, P.1
Kocher, T.2
Holzmann, J.3
Mohring, T.4
Ammerer, G.5
Mechtler, K.6
-
42
-
-
0035384687
-
18O labeling for comparative proteomics: Model studies with two serotypes of adenovirus
-
DOI 10.1021/ac001404c
-
Yao X, Freas A, Ramirez J, Demirev PA, Fenselau C. Proteolytic 18O labeling for comparative proteomics: model studies with two serotypes of adenovirus. Anal Chem. 2001;73:2836-2842. (Pubitemid 32868136)
-
(2001)
Analytical Chemistry
, vol.73
, Issue.13
, pp. 2836-2842
-
-
Yao, X.1
Freas, A.2
Ramirez, J.3
Demirev, P.A.4
Fenselau, C.5
-
43
-
-
19444367322
-
18O labeling with an ion trap mass spectrometer and the analysis software application "ZoomQuant"
-
DOI 10.1016/j.jasms.2005.02.024, PII S1044030505002011
-
Hicks WA, Halligan BD, Slyper RY, Twigger SN, Greene AS, Olivier M. Simultaneous quantification and identification using 18O labeling with an ion trap mass spectrometer and the analysis software application "ZoomQuant". J Am Soc Mass Spectrom. 2005;16:916-925. (Pubitemid 40725167)
-
(2005)
Journal of the American Society for Mass Spectrometry
, vol.16
, Issue.6
, pp. 916-925
-
-
Hicks, W.A.1
Halligan, B.D.2
Slyper, R.Y.3
Twigger, S.N.4
Greene, A.S.5
Olivier, M.6
-
44
-
-
51649130184
-
18O labeling over a coffee break: A rapid strategy for quantitative proteomics
-
Mirza S P, Greene AS, Olivier M. 18O labeling over a coffee break: a rapid strategy for quantitative proteomics. J Proteome Res. 2008;7:3042-3048.
-
(2008)
J Proteome Res.
, vol.7
, pp. 3042-3048
-
-
Mirza, S.P.1
Greene, A.S.2
Olivier, M.3
-
45
-
-
0036665581
-
Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry
-
DOI 10.1021/pr025517j
-
Chelius D, Bondarenko PV. Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry. J Proteome Res. 2002;1:317-323. (Pubitemid 36395872)
-
(2002)
Journal of Proteome Research
, vol.1
, Issue.4
, pp. 317-323
-
-
Chelius, D.1
Bondarenko, P.V.2
-
46
-
-
41149127192
-
A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen
-
DOI 10.1002/pmic.200700426
-
Asara JM, Christofk HR, Freimark LM, Cantley LC. A label-free quantif-cation method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen. Proteomics. 2008;8:994-999. (Pubitemid 351441438)
-
(2008)
Proteomics
, vol.8
, Issue.5
, pp. 994-999
-
-
Asara, J.M.1
Christofk, H.R.2
Freimark, L.M.3
Cantley, L.C.4
-
47
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
DOI 10.1021/ac0498563
-
Liu H, Sadygov RG, Yates JR 3rd. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal Chem. 2004;76:4193-4201. (Pubitemid 38943698)
-
(2004)
Analytical Chemistry
, vol.76
, Issue.14
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates III, J.R.3
-
48
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
DOI 10.1038/85686
-
Washburn MP, Wolters D, Yates JR 3rd. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol. 2001;19:242-247. (Pubitemid 32220565)
-
(2001)
Nature Biotechnology
, vol.19
, Issue.3
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates, J.R.3
-
49
-
-
79955848704
-
Characterization of the human myocardial proteome in infilam-matory dilated cardiomyopathy by label-free quantitative shotgun pro-teomics of heart biopsies
-
Hammer E, Goritzka M, Ameling S, Darm K, Steil L, Klingel K, Trimpert C, Herda LR, Dörr M, Kroemer HK, Kandolf R, Staudt A, Felix SB, Völker U. Characterization of the human myocardial proteome in infilam-matory dilated cardiomyopathy by label-free quantitative shotgun pro-teomics of heart biopsies. J Proteome Res. 2011;10:2161-2171.
-
(2011)
J Proteome Res.
, vol.10
, pp. 2161-2171
-
-
Hammer, E.1
Goritzka, M.2
Ameling, S.3
Darm, K.4
Steil, L.5
Klingel, K.6
Trimpert, C.7
Herda, L.R.8
Dörr, M.9
Kroemer, H.K.10
Kandolf, R.11
Staudt, A.12
Felix, S.B.13
Völker, U.14
-
50
-
-
77957272228
-
Quantitative phosphoproteomic analysis reveals cAMP/vasopressin-dependent signaling pathways in native renal thick ascending limb cells
-
Gunaratne R, Braucht DW, Rinschen MM, Chou CL, Hoffert JD, Pisitkun T, Knepper MA. Quantitative phosphoproteomic analysis reveals cAMP/vasopressin- dependent signaling pathways in native renal thick ascending limb cells. Proc Natl Acad Sci U|S|A. 2010;107:15653-15658.
-
(2010)
Proc Natl Acad Sci U|S|A
, vol.107
, pp. 15653-15658
-
-
Gunaratne, R.1
Braucht, D.W.2
Rinschen, M.M.3
Chou, C.L.4
Hoffert, J.D.5
Pisitkun, T.6
Knepper, M.A.7
-
51
-
-
0346668199
-
Absolute quantification of the G protein-coupled receptor rhodopsin by LC/MS/MS using proteolysis product peptides and synthetic peptide standards
-
DOI 10.1021/ac026154+
-
Barnidge DR, Dratz EA, Martin T, Bonilla LE, Moran LB, Lindall A. Absolute quantification of the G protein-coupled receptor rhodopsin by LC/MS/MS using proteolysis product peptides and synthetic peptide standards. Anal Chem. 2003;75:445-451. (Pubitemid 36176714)
-
(2003)
Analytical Chemistry
, vol.75
, Issue.3
, pp. 445-451
-
-
Barnidge, D.R.1
Dratz, E.A.2
Martin, T.3
Bonilla, L.E.4
Moran, L.B.5
Lindall, A.6
-
52
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
DOI 10.1073/pnas.0832254100
-
Gerber SA, Rush J, Stemman O, Kirschner MW, Gygi SP. Absolute quan-tification of proteins and phosphoproteins from cell lysates by tandem MS. Proc Natl Acad Sci U|S|A. 2003;100:6940-6945. (Pubitemid 36706372)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.12
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
Kirschner, M.W.4
Gygi, S.P.5
-
53
-
-
13444260275
-
The absolute quantification strategy: A general procedure for the quantification of proteins and post-translational modifications
-
DOI 10.1016/j.ymeth.2004.08.018
-
Kirkpatrick DS, Gerber SA, Gygi SP. The absolute quantification strategy: a general procedure for the quantification of proteins and post-translation-al modifications. Methods. 2005;35:265-273. (Pubitemid 40255592)
-
(2005)
Methods
, vol.35
, Issue.3 SPEC. ISS.
, pp. 265-273
-
-
Kirkpatrick, D.S.1
Gerber, S.A.2
Gygi, S.P.3
-
54
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: A tutorial
-
Lange V, Picotti P, Domon B, Aebersold R. Selected reaction monitoring for quantitative proteomics: a tutorial. Mol Syst Biol. 2008;4:222.
-
(2008)
Mol Syst Biol.
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
55
-
-
71049137289
-
Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma
-
Kuzyk MA, Smith D, Yang J, Cross TJ, Jackson AM, Hardie DB, Anderson NL, Borchers CH. Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma. Mol Cell Proteomics. 2009;8:1860-1877.
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 1860-1877
-
-
Kuzyk, M.A.1
Smith, D.2
Yang, J.3
Cross, T.J.4
Jackson, A.M.5
Hardie, D.B.6
Anderson, N.L.7
Borchers, C.H.8
-
56
-
-
8844233567
-
Mass Spectrometric Quantitation of Peptides and Proteins Using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA)
-
DOI 10.1021/pr034086h
-
Anderson NL, Anderson NG, Haines LR, Hardie DB, Olafson RW, Pearson TW. Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA). J Proteome Res. 2004;3:235-244. (Pubitemid 38500990)
-
(2004)
Journal of Proteome Research
, vol.3
, Issue.2
, pp. 235-244
-
-
Anderson, N.L.1
Anderson, N.G.2
Haines, L.R.3
Hardie, D.B.4
Olafson, R.W.5
Pearson, T.W.6
-
57
-
-
55349095003
-
Protein quantitation through targeted mass spectrometry: The way out of biomarker purgatory?
-
Carr SA, Anderson L. Protein quantitation through targeted mass spectrometry: the way out of biomarker purgatory? Clin Chem. 2008;54:1749-1752.
-
(2008)
Clin Chem.
, vol.54
, pp. 1749-1752
-
-
Carr, S.A.1
Anderson, L.2
-
58
-
-
60649101258
-
The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results
-
Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R. The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results. BMC Bioinformatics. 2008;9:529.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 529
-
-
Braisted, J.C.1
Kuntumalla, S.2
Vogel, C.3
Marcotte, E.M.4
Rodrigues, A.R.5
Wang, R.6
Huang, S.T.7
Ferlanti, E.S.8
Saeed, A.I.9
Fleischmann, R.D.10
Peterson, S.N.11
Pieper, R.12
-
59
-
-
33846165487
-
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
-
DOI 10.1038/nbt1270, PII NBT1270
-
Lu P, Vogel C, Wang R, Yao X, Marcotte EM. Absolute protein expression profiling estimates the relative contributions of transcriptional and trans-lational regulation. Nat Biotechnol. 2007;25:117-124. (Pubitemid 46087910)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.1
, pp. 117-124
-
-
Lu, P.1
Vogel, C.2
Wang, R.3
Yao, X.4
Marcotte, E.M.5
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