-
1
-
-
18744415995
-
Kinomics: Methods for deciphering the Hnome
-
Johnson, S. A.; Hunter, T. Kinomics: methods for deciphering the Hnome. Nat. Methods 2005, 2 (1), 17-25.
-
(2005)
Nat. Methods
, vol.2
, Issue.1
, pp. 17-25
-
-
Johnson, S.A.1
Hunter, T.2
-
2
-
-
35348944884
-
STAT nuclear translocation: Potential for pharmacological intervention
-
Meyer, T.; Vinkemeier, U. STAT nuclear translocation: potential for pharmacological intervention. Expert Opin. Ther. Targets 2007, 11 (10), 1355-65.
-
(2007)
Expert Opin. Ther. Targets
, vol.11
, Issue.10
, pp. 1355-1365
-
-
Meyer, T.1
Vinkemeier, U.2
-
3
-
-
34548289502
-
Dynamic FoxO transcription factors
-
Huang, H.; Tindall, D.J. Dynamic FoxO transcription factors. J. Cell Sci. 2007, 120 (Pt 15), 2479-87.
-
(2007)
J. Cell Sci
, vol.120
, Issue.PART 15
, pp. 2479-2487
-
-
Huang, H.1
Tindall, D.J.2
-
4
-
-
33748944502
-
Phosphorylation of Ll-type cell-adhesion molecules-ankyrins away!
-
Nagaraj, K.; Hortsch, M. Phosphorylation of Ll-type cell-adhesion molecules-ankyrins away! Trends Biochem. Sci. 2006, 31 (10), 544-6.
-
(2006)
Trends Biochem. Sci
, vol.31
, Issue.10
, pp. 544-546
-
-
Nagaraj, K.1
Hortsch, M.2
-
5
-
-
0027403322
-
Phosphorylation of amino acid neurotransmitter receptors in synaptic plasticity
-
Raymond, L. A.; Blackstone, C. D.; Huganir, R. L. Phosphorylation of amino acid neurotransmitter receptors in synaptic plasticity. Trends Neurosci. 1993, 16 (4), 147-53.
-
(1993)
Trends Neurosci
, vol.16
, Issue.4
, pp. 147-153
-
-
Raymond, L.A.1
Blackstone, C.D.2
Huganir, R.L.3
-
6
-
-
10044272900
-
Nuclear calcium/calmodulin regulates memory consolidation
-
Limback-Stokin, K.; Korzus, E.; Nagaoka-Yasuda, R.; Mayford, M. Nuclear calcium/calmodulin regulates memory consolidation. J. Neurosci. 2004, 24 (48), 10858-67.
-
(2004)
J. Neurosci
, vol.24
, Issue.48
, pp. 10858-10867
-
-
Limback-Stokin, K.1
Korzus, E.2
Nagaoka-Yasuda, R.3
Mayford, M.4
-
7
-
-
36249006058
-
The nuclear kinase mitogen-and stress-activated protein kinase 1 regulates hippocampal chromatin remodeling in memory formation
-
Chwang, W. B.; Arthur, J. S.; Schumacher, A.; Sweatt, J. D. The nuclear kinase mitogen-and stress-activated protein kinase 1 regulates hippocampal chromatin remodeling in memory formation. J. Neurosci. 2007, 27 (46), 12732-42.
-
(2007)
J. Neurosci
, vol.27
, Issue.46
, pp. 12732-12742
-
-
Chwang, W.B.1
Arthur, J.S.2
Schumacher, A.3
Sweatt, J.D.4
-
8
-
-
33744814069
-
Combinatorial chromatin modifications and memory storage: A code for memory
-
Wood, M. A.; Hawk, J. D.; Abel, T. Combinatorial chromatin modifications and memory storage: a code for memory. Learn. Mem. 2006, 13 (3), 241-1.
-
(2006)
Learn. Mem
, vol.13
, Issue.3
, pp. 241-241
-
-
Wood, M.A.1
Hawk, J.D.2
Abel, T.3
-
9
-
-
85177148791
-
-
Alonso, A. C; Zaidi, T.; Grundke-Iqbal, I.; Iqbal, K. Role of abnormally phosphorylated tau in the breakdown of microtubules in Alzheimer disease. Proc. Natl. Acad. Sci. U.SA. 1994, 91 (12), 5562-6.
-
Alonso, A. C; Zaidi, T.; Grundke-Iqbal, I.; Iqbal, K. Role of abnormally phosphorylated tau in the breakdown of microtubules in Alzheimer disease. Proc. Natl. Acad. Sci. U.SA. 1994, 91 (12), 5562-6.
-
-
-
-
10
-
-
34548299424
-
Developing pharmacological therapies for Alzheimer disease
-
Iqbal, K.; Grundke-Iqbal, I. Developing pharmacological therapies for Alzheimer disease. Cell. Mol. Life Sci. 2007, 64 (17), 2234-44.
-
(2007)
Cell. Mol. Life Sci
, vol.64
, Issue.17
, pp. 2234-2244
-
-
Iqbal, K.1
Grundke-Iqbal, I.2
-
11
-
-
33751268368
-
Protein serine/threonine phosphatases in neuronal plasticity and disorders of learning and memory
-
Mansuy, I. M.; Shenolikar, S. Protein serine/threonine phosphatases in neuronal plasticity and disorders of learning and memory. Trends Neurosci. 2006, 29 (12), 679-86.
-
(2006)
Trends Neurosci
, vol.29
, Issue.12
, pp. 679-686
-
-
Mansuy, I.M.1
Shenolikar, S.2
-
12
-
-
34249947699
-
ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage
-
Matsuoka, S.; Ballif, B. A.; Smogorzewska, A.; McDonald, E. R., III; Hurov, K. E.; Luo, J.; Bakalarski, C. E.; Zhao, Z.; Solimini, N.; Lerenthal, Y.; Shiloh, Y.; Gygi, S. P.; Elledge, S. J. ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. Science 2007, 316 (5828), 1160-6.
-
(2007)
Science
, vol.316
, Issue.5828
, pp. 1160-1166
-
-
Matsuoka, S.1
Ballif, B.A.2
Smogorzewska, A.3
McDonald III, E.R.4
Hurov, K.E.5
Luo, J.6
Bakalarski, C.E.7
Zhao, Z.8
Solimini, N.9
Lerenthal, Y.10
Shiloh, Y.11
Gygi, S.P.12
Elledge, S.J.13
-
13
-
-
0022541790
-
Isolation of phosphoproteins by immobilized metal (Fe3+) affinity chromatography
-
Andersson, L.; Porath, I. Isolation of phosphoproteins by immobilized metal (Fe3+) affinity chromatography. Anal. Biochem. 1986, 154 (1), 250-4.
-
(1986)
Anal. Biochem
, vol.154
, Issue.1
, pp. 250-254
-
-
Andersson, L.1
Porath, I.2
-
14
-
-
30744432140
-
Quantitative phosphoproteomic analysis of the tumor necrosis factor pathway
-
Cantin, G. T.; Venable, J. D.; Cociorva, D.; Yates, J. R., III. Quantitative phosphoproteomic analysis of the tumor necrosis factor pathway. J. Proteome Res. 2006, 5 (1), 127-34.
-
(2006)
J. Proteome Res
, vol.5
, Issue.1
, pp. 127-134
-
-
Cantin, G.T.1
Venable, J.D.2
Cociorva, D.3
Yates III, J.R.4
-
15
-
-
33846785485
-
Large-scale phosphorylation analysis of mouse liver
-
Villen, J.; Beausoleil, S. A.; Gerber, S. A.; Gygi, S. P. Large-scale phosphorylation analysis of mouse liver. Proc. Natl. Acad. Sci. U.SA. 2007, 104 (5), 1488-93.
-
(2007)
Proc. Natl. Acad. Sci. U.SA
, vol.104
, Issue.5
, pp. 1488-1493
-
-
Villen, J.1
Beausoleil, S.A.2
Gerber, S.A.3
Gygi, S.P.4
-
16
-
-
3242688830
-
Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESI-MS/MS and titanium oxide precolumns
-
Pinkse, M. W.; Uitto, P. M.; Hilhorst, M. J.; Ooms, B.; Heck, A. J. Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESI-MS/MS and titanium oxide precolumns. Anal. Chem. 2004, 76 (14), 3935-43.
-
(2004)
Anal. Chem
, vol.76
, Issue.14
, pp. 3935-3943
-
-
Pinkse, M.W.1
Uitto, P.M.2
Hilhorst, M.J.3
Ooms, B.4
Heck, A.J.5
-
17
-
-
39749186759
-
Highly robust, automated, and sensitive online Ti02-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster
-
Pinkse, M. W.; Mohammed, S.; Gouw, J. W.; van Breukelen, B.; Vos, H. R.; Heck, A. J. Highly robust, automated, and sensitive online Ti02-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster. J. Proteome Res. 2008, 7 (2), 687-97.
-
(2008)
J. Proteome Res
, vol.7
, Issue.2
, pp. 687-697
-
-
Pinkse, M.W.1
Mohammed, S.2
Gouw, J.W.3
van Breukelen, B.4
Vos, H.R.5
Heck, A.J.6
-
18
-
-
4344574540
-
Large-scale characterization of HeLa cell nuclear phosphoproteins
-
Beausoleil, S. A.; Jedrychowski, M.; Schwartz, D.; Elias, J. E.; Villen, J.; Li, J.; Cohn, M. A.; Cantley, L. C; Gygi, S. P. Large-scale characterization of HeLa cell nuclear phosphoproteins. Proc. Natl. Acad. Sci. U.SA. 2004, 101 (33), 12130-5.
-
(2004)
Proc. Natl. Acad. Sci. U.SA
, vol.101
, Issue.33
, pp. 12130-12135
-
-
Beausoleil, S.A.1
Jedrychowski, M.2
Schwartz, D.3
Elias, J.E.4
Villen, J.5
Li, J.6
Cohn, M.A.7
Cantley, L.C.8
Gygi, S.P.9
-
19
-
-
21144458164
-
Immunoaffinity profiling of tyrosine phosphorylation in cancer cells
-
Rush, J.; Moritz, A.; Lee, K. A.; Guo, A.; Goss, V. L.; Spek, E. J.; Zhang, H.; Zha, X. M.; Polakiewicz, R. D.; Comb, M. J. Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. Nat. Biotech-nol. 2005, 23 (1), 94-101.
-
(2005)
Nat. Biotech-nol
, vol.23
, Issue.1
, pp. 94-101
-
-
Rush, J.1
Moritz, A.2
Lee, K.A.3
Guo, A.4
Goss, V.L.5
Spek, E.J.6
Zhang, H.7
Zha, X.M.8
Polakiewicz, R.D.9
Comb, M.J.10
-
20
-
-
0032237775
-
Fragmentation of phosphopeptides in an ion trap mass spectrometer
-
DeGnore, J. P.; Qin, J. Fragmentation of phosphopeptides in an ion trap mass spectrometer. J. Am. Soc. Mass Spectrom. 1998, 9 (11), 1175-88.
-
(1998)
J. Am. Soc. Mass Spectrom
, vol.9
, Issue.11
, pp. 1175-1188
-
-
DeGnore, J.P.1
Qin, J.2
-
21
-
-
0035298820
-
Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode
-
Steen, H.; Kuster, B.; Fernandez, M.; Pandey, A.; Mann, M. Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode. Anal. Chem. 2001, 73 (7), 1440-8.
-
(2001)
Anal. Chem
, vol.73
, Issue.7
, pp. 1440-1448
-
-
Steen, H.1
Kuster, B.2
Fernandez, M.3
Pandey, A.4
Mann, M.5
-
22
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen, J. V.; Blagoev, B.; Gnad, F.; Macek, B.; Kumar, C; Mortensen, P.; Mann, M. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2006, 127 (3), 635-48.
-
(2006)
Cell
, vol.127
, Issue.3
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
23
-
-
0033535961
-
Accurate quantitation of protein expression and site-specific phosphorylation
-
Oda, Y.; Huang, K.; Cross, F. R.; Cowburn, D.; Chait, B. T. Accurate quantitation of protein expression and site-specific phosphorylation. Proc. Natl. Acad. Sci. U.SA. 1999, 96 (12), 6591-6.
-
(1999)
Proc. Natl. Acad. Sci. U.SA
, vol.96
, Issue.12
, pp. 6591-6596
-
-
Oda, Y.1
Huang, K.2
Cross, F.R.3
Cowburn, D.4
Chait, B.T.5
-
24
-
-
0035326232
-
-
Conrads, T. P.; Alving, K.; Veenstra, T. D.; Belov, M. E.; erson, G. A.; erson, D. J.; Lipton, M. S.; Pasa-Tolic, L.; Udseth, H. R.; Chrisler, W. B.; Thrall, B. D.; Smith, R. D. Quantitative analysis of bacterial and mammalian proteomes using a combination of cysteine affinity tags and 15N-metabolic labeling. Anal Chem. 2001, 73 (9), 2132-9.
-
Conrads, T. P.; Alving, K.; Veenstra, T. D.; Belov, M. E.; erson, G. A.; erson, D. J.; Lipton, M. S.; Pasa-Tolic, L.; Udseth, H. R.; Chrisler, W. B.; Thrall, B. D.; Smith, R. D. Quantitative analysis of bacterial and mammalian proteomes using a combination of cysteine affinity tags and 15N-metabolic labeling. Anal Chem. 2001, 73 (9), 2132-9.
-
-
-
-
25
-
-
0346122950
-
-
MacCoss, M. J.; Wu, C. C; Liu, H.; Sadygov, R.; Yates, J. R., III. A correlation algorithm for the automated quantitative analysis of shotgun proteomics data. Anal. Chem. 2003, 75 (24), 6912-21.
-
MacCoss, M. J.; Wu, C. C; Liu, H.; Sadygov, R.; Yates, J. R., III. A correlation algorithm for the automated quantitative analysis of shotgun proteomics data. Anal. Chem. 2003, 75 (24), 6912-21.
-
-
-
-
26
-
-
15944377809
-
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway
-
Gruhler, A.; Olsen, J. V.; Mohammed, S.; Mortensen, P.; Faergeman, N. I.; Mann, M.; Jensen, O. N. Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway. Mol. Cell. Proteomics 2005, 4 (3), 310-27.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, Issue.3
, pp. 310-327
-
-
Gruhler, A.1
Olsen, J.V.2
Mohammed, S.3
Mortensen, P.4
Faergeman, N.I.5
Mann, M.6
Jensen, O.N.7
-
27
-
-
0034921817
-
Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation
-
Goodlett, D. R.; Keller, A.; Watts, J. D.; Newitt, R.; Yi, E. C; Purvine, S.; Eng, J. K.; von Haller, P.; Aebersold, R.; Kolker, E. Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation. Rapid Commun. Mass Spectrom. 2001, 15 (14), 1214-21.
-
(2001)
Rapid Commun. Mass Spectrom
, vol.15
, Issue.14
, pp. 1214-1221
-
-
Goodlett, D.R.1
Keller, A.2
Watts, J.D.3
Newitt, R.4
Yi, E.C.5
Purvine, S.6
Eng, J.K.7
von Haller, P.8
Aebersold, R.9
Kolker, E.10
-
28
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC. as a simple and accurate approach to expression proteomics
-
Ong, S. E.; Blagoev, B.; Kratchmarova, I.; Kristensen, D. B.; Steen, H.; Pandey, A.; Mann, M.; Stable isotope labeling by amino acids in cell culture, SILAC. as a simple and accurate approach to expression proteomics. Mot. Cell. Proteomics 2002, 1 (5), 376-86.
-
(2002)
Mot. Cell. Proteomics
, vol.1
, Issue.5
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
29
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi, S. P.; Rist, B.; Gerber, S. A.; Turecek, F.; Gelb, M. H.; Aebersold, R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 1999, 17 (10), 994-9.
-
(1999)
Nat. Biotechnol
, vol.17
, Issue.10
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
30
-
-
0041706161
-
-
Krijgsveld, J.; Retting, R. F.; Mahmoudi, T.; Johansen, J.; Artal-Sanz, M.; Verrijzer, C. P.; Plasterk, R. H.; Heck, A. J. Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics. Nat. Biotechnol. 2003, 21 (8), 927-31.
-
Krijgsveld, J.; Retting, R. F.; Mahmoudi, T.; Johansen, J.; Artal-Sanz, M.; Verrijzer, C. P.; Plasterk, R. H.; Heck, A. J. Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics. Nat. Biotechnol. 2003, 21 (8), 927-31.
-
-
-
-
31
-
-
33847661220
-
Qualitative and quantitative analyses of protein phosphorylation in naive and stimulated mouse synaptosomal preparations
-
Munton, R. P.; Tweedie-Cullen, R.; Livingstone-Zatchej, M.; Wein-andy, F.; Waidelich, M.; Longo, D.; Gehrig, P.; Potthast, F.; Rutishauser, D.; Gerrits, B.; Panse, C.; Schlapbach, R.; Mansuy, I. M. Qualitative and quantitative analyses of protein phosphorylation in naive and stimulated mouse synaptosomal preparations. Mol. Cell. Proteomics 2007, 6 (2), 283-93.
-
(2007)
Mol. Cell. Proteomics
, vol.6
, Issue.2
, pp. 283-293
-
-
Munton, R.P.1
Tweedie-Cullen, R.2
Livingstone-Zatchej, M.3
Wein-andy, F.4
Waidelich, M.5
Longo, D.6
Gehrig, P.7
Potthast, F.8
Rutishauser, D.9
Gerrits, B.10
Panse, C.11
Schlapbach, R.12
Mansuy, I.M.13
-
32
-
-
42649093228
-
Quantitative analysis of synaptic phosphorylation and protein expression
-
Trinidad, J. C.; Thalhammer, A.; Specht, C. G.; Lynn, A. J.; Baker, P. R.; Schoepfer, R.; Burlingame, A. L. Quantitative analysis of synaptic phosphorylation and protein expression. Mol Cell Proteomics 2008, 7 (4), 684-96.
-
(2008)
Mol Cell Proteomics
, vol.7
, Issue.4
, pp. 684-696
-
-
Trinidad, J.C.1
Thalhammer, A.2
Specht, C.G.3
Lynn, A.J.4
Baker, P.R.5
Schoepfer, R.6
Burlingame, A.L.7
-
33
-
-
4444346217
-
Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis
-
Wu, C. G; MacCoss, M. J.; Howell, K. E.; Matthews, D. E.; Yates, J. R., III. Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis. Anal. Chem. 2004, 76 (17), 4951-9.
-
(2004)
Anal. Chem
, vol.76
, Issue.17
, pp. 4951-4959
-
-
Wu, C.G.1
MacCoss, M.J.2
Howell, K.E.3
Matthews, D.E.4
Yates III, J.R.5
-
34
-
-
34249335982
-
15N metabolic labeling of mammalian tissue with slow protein turnover
-
McClatchy, D. B.; Dong, M. Q.; Wu, C. C.; Venable, J. D.; Yates, J. R., III. 15N metabolic labeling of mammalian tissue with slow protein turnover. J. Proteome Res. 2007, 6 (5), 2005-10.
-
(2007)
J. Proteome Res
, vol.6
, Issue.5
, pp. 2005-2010
-
-
McClatchy, D.B.1
Dong, M.Q.2
Wu, C.C.3
Venable, J.D.4
Yates III, J.R.5
-
35
-
-
34548391374
-
Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development
-
McClatchy, D. B.; Liao, L.; Park, S. K.; Venable, J. D.; Yates, J. R. Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development. Genome Res. 2007, 17 (9), 1378-88.
-
(2007)
Genome Res
, vol.17
, Issue.9
, pp. 1378-1388
-
-
McClatchy, D.B.1
Liao, L.2
Park, S.K.3
Venable, J.D.4
Yates, J.R.5
-
36
-
-
28544433959
-
Measurement of the isotope enrichment of stable isotope-labeled proteins using high-resolution mass spectra of peptides
-
MacCoss, M. J.; Wu, C. C; Matthews, D. E.; Yates, J. R., III. Measurement of the isotope enrichment of stable isotope-labeled proteins using high-resolution mass spectra of peptides. Anal. Chem. 2005, 77 (23), 7646-53.
-
(2005)
Anal. Chem
, vol.77
, Issue.23
, pp. 7646-7653
-
-
MacCoss, M.J.1
Wu, C.C.2
Matthews, D.E.3
Yates III, J.R.4
-
37
-
-
0021100690
-
Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
-
Dignam, J. D.; Lebovitz, R. M.; Roeder, R. G. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 1983, 11 (5), 1475-89.
-
(1983)
Nucleic Acids Res
, vol.11
, Issue.5
, pp. 1475-1489
-
-
Dignam, J.D.1
Lebovitz, R.M.2
Roeder, R.G.3
-
38
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
Washburn, M. P.; Wolters, D.; Yates, J. R., III. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 2001, 19 (3), 242-7.
-
(2001)
Nat. Biotechnol
, vol.19
, Issue.3
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates III, J.R.3
-
39
-
-
35648943746
-
ProLuCID, a fast and sensitive tandem mass spectra-based protein identification program
-
Xu, T.; Venable, J. D.; Park, S. K.; Cociorva, D.; Lu, B.; Liao, L.; Wohlschlegel, J.; Hewel, J.; Yates, J. R. I. ProLuCID, a fast and sensitive tandem mass spectra-based protein identification program. Mol. Cell. Proteomics 2006, 5, S174.
-
(2006)
Mol. Cell. Proteomics
, vol.5
-
-
Xu, T.1
Venable, J.D.2
Park, S.K.3
Cociorva, D.4
Lu, B.5
Liao, L.6
Wohlschlegel, J.7
Hewel, J.8
Yates, J.R.I.9
-
40
-
-
41549117597
-
A quantitative analysis software tool for mass spectrometry-based proteomics
-
40
-
(40 ) Park, S. K.; Venable, J. D.; Xu, T.; Yates, J. R., III. A quantitative analysis software tool for mass spectrometry-based proteomics. Nat. Methods 2008, 5 (4), 319-22.
-
(2008)
Nat. Methods
, vol.5
, Issue.4
, pp. 319-322
-
-
Park, S.K.1
Venable, J.D.2
Xu, T.3
Yates III, J.R.4
-
41
-
-
33847194634
-
Automatic validation of phosphopepude identifications from tandem mass spectra
-
Lu, B.; Ruse, C; Xu, T.; Park, S. K.; Yates, J., III. Automatic validation of phosphopepude identifications from tandem mass spectra. Anal. Chem. 2007, 79 (4), 1301-10.
-
(2007)
Anal. Chem
, vol.79
, Issue.4
, pp. 1301-1310
-
-
Lu, B.1
Ruse, C.2
Xu, T.3
Park, S.K.4
Yates III, J.5
-
42
-
-
0036393898
-
DTASelect and Contrast: Tools for assembling and comparing protein identifications from shotgun proteomics
-
Tabb, D. L.; McDonald, W. H.; Yates, J. R., III. DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J. Proteome Res. 2002, 1 (1), 21-6.
-
(2002)
J. Proteome Res
, vol.1
, Issue.1
, pp. 21-26
-
-
Tabb, D.L.1
McDonald, W.H.2
Yates III, J.R.3
-
43
-
-
8844272471
-
Phosphoproteomic analysis of the developing mouse brain
-
Ballif, B. A.; Villen, J.; Beausoleil, S. A.; Schwartz, D.; Gygi, S. P. Phosphoproteomic analysis of the developing mouse brain. Mol. Cell. Proteomics 2004, 3 (11), 1093-101.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, Issue.11
, pp. 1093-1101
-
-
Ballif, B.A.1
Villen, J.2
Beausoleil, S.A.3
Schwartz, D.4
Gygi, S.P.5
-
44
-
-
33847616949
-
Reproducible isolation of distinct, overlapping segments of the phosphoproteome
-
Bodenmiller, B.; Mueller, L. N.; Mueller, M.; Domon, B.; Aebersold, R. Reproducible isolation of distinct, overlapping segments of the phosphoproteome. Nat. Methods 2007, 4 (3), 231-7.
-
(2007)
Nat. Methods
, vol.4
, Issue.3
, pp. 231-237
-
-
Bodenmiller, B.1
Mueller, L.N.2
Mueller, M.3
Domon, B.4
Aebersold, R.5
-
45
-
-
44449124267
-
Combining protein-based IMAC, peptide-based, and MudPIT for efficient phosphoproteomic analysis
-
Cantin, G. T.; Yi, W.; Lu, B.; Park, S. K.; Xu, T.; Lee, J. D.; Yates, J. R., III. Combining protein-based IMAC, peptide-based, and MudPIT for efficient phosphoproteomic analysis. J. Proteome Res. 2008, 7 (3), 1346-51.
-
(2008)
J. Proteome Res
, vol.7
, Issue.3
, pp. 1346-1351
-
-
Cantin, G.T.1
Yi, W.2
Lu, B.3
Park, S.K.4
Xu, T.5
Lee, J.D.6
Yates III, J.R.7
-
46
-
-
33749853607
-
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
-
Beausoleil, S. A.; Villen, J.; Gerber, S. A.; Rush, J.; Gygi, S. P. A probability-based approach for high-throughput protein phosphorylation analysis and site localization. Nat. Biotechnol. 2006, 24 (10), 1285-92.
-
(2006)
Nat. Biotechnol
, vol.24
, Issue.10
, pp. 1285-1292
-
-
Beausoleil, S.A.1
Villen, J.2
Gerber, S.A.3
Rush, J.4
Gygi, S.P.5
-
47
-
-
27944499451
-
An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
-
Schwartz, D.; Gygi, S. P. An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets. Nat. Biotechnol. 2005, 23 (11), 1391-8.
-
(2005)
Nat. Biotechnol
, vol.23
, Issue.11
, pp. 1391-1398
-
-
Schwartz, D.1
Gygi, S.P.2
-
48
-
-
0032100631
-
-
Veeranna; Amin, N. D.; Ahn, N. G.; Jaffe, H.; Winters, C. A.; Grant, P.; Pant, H. C. Mitogen-activated protein kinases (Erkl,2) phos-phorylate Lys-Ser-Pro (KSP) repeats in neurofilament proteins NF-H and NF-M. J. Neurosci. 1998, 18 (11), 4008-21.
-
Veeranna; Amin, N. D.; Ahn, N. G.; Jaffe, H.; Winters, C. A.; Grant, P.; Pant, H. C. Mitogen-activated protein kinases (Erkl,2) phos-phorylate Lys-Ser-Pro (KSP) repeats in neurofilament proteins NF-H and NF-M. J. Neurosci. 1998, 18 (11), 4008-21.
-
-
-
-
49
-
-
0032742874
-
ATP-dependent chromatin remodelling: SWI/SNF and Co. are on the job
-
Muchardt, C; Yaniv, M. ATP-dependent chromatin remodelling: SWI/SNF and Co. are on the job. J. Mol. Biol. 1999, 293 (2), 187-98.
-
(1999)
J. Mol. Biol
, vol.293
, Issue.2
, pp. 187-198
-
-
Muchardt, C.1
Yaniv, M.2
-
50
-
-
33744955345
-
NAB2 represses transcription by interacting with the CHD4 subunit of the nucleosome remodeling and deacetylase (NuRD) complex
-
Srinivasan, R.; Mager, G. M.; Ward, R. M.; Mayer, J.; Svaren, J. NAB2 represses transcription by interacting with the CHD4 subunit of the nucleosome remodeling and deacetylase (NuRD) complex. J. Biol. Chem. 2006, 281 (22), 15129-37.
-
(2006)
J. Biol. Chem
, vol.281
, Issue.22
, pp. 15129-15137
-
-
Srinivasan, R.1
Mager, G.M.2
Ward, R.M.3
Mayer, J.4
Svaren, J.5
-
51
-
-
2642526203
-
Distinct expression of phosphorylated N-methyl-D-aspartate receptor NR1 subunits by projection neurons and interneurons in the striatum of normal and amphetamine-treated rats
-
Liu, Z.; Mao, L.; Parelkar, N. K.; Tang, Q.; Samdani, S.; Wang, J. Q. Distinct expression of phosphorylated N-methyl-D-aspartate receptor NR1 subunits by projection neurons and interneurons in the striatum of normal and amphetamine-treated rats. J. Comp. Neurol. 2004, 474 (3), 393-406.
-
(2004)
J. Comp. Neurol
, vol.474
, Issue.3
, pp. 393-406
-
-
Liu, Z.1
Mao, L.2
Parelkar, N.K.3
Tang, Q.4
Samdani, S.5
Wang, J.Q.6
-
52
-
-
33646132293
-
The roles of heterogeneous nuclear ribonucleoproteins in tumour development and progression
-
Carpenter, B.; MacKay, C; Alnabulsi, A.; MacKay, M.; Telfer, C; Melvin, W. T.; Murray, G. I. The roles of heterogeneous nuclear ribonucleoproteins in tumour development and progression. Biochim. Biophys. Acta 2006, 1765 (2), 85-100.
-
(2006)
Biochim. Biophys. Acta
, vol.1765
, Issue.2
, pp. 85-100
-
-
Carpenter, B.1
MacKay, C.2
Alnabulsi, A.3
MacKay, M.4
Telfer, C.5
Melvin, W.T.6
Murray, G.I.7
-
53
-
-
32344450824
-
Genomic DNA methylation: The mark and its mediators
-
Klose, R. J.; Bird, A. P. Genomic DNA methylation: the mark and its mediators. Trends Biochem. Sci. 2006, 31 (2), 89-97.
-
(2006)
Trends Biochem. Sci
, vol.31
, Issue.2
, pp. 89-97
-
-
Klose, R.J.1
Bird, A.P.2
-
54
-
-
0026747761
-
Purification, sequence, and cellular localization of a novel chromosomal protein that binds to methylated DNA
-
Lewis, J. D.; Meehan, R. R.; Henzel, W. J.; Maurer-Fogy, I.; Jeppesen, P.; Klein, F.; Bird, A. Purification, sequence, and cellular localization of a novel chromosomal protein that binds to methylated DNA. Cell 1992, 69 (6), 905-14.
-
(1992)
Cell
, vol.69
, Issue.6
, pp. 905-914
-
-
Lewis, J.D.1
Meehan, R.R.2
Henzel, W.J.3
Maurer-Fogy, I.4
Jeppesen, P.5
Klein, F.6
Bird, A.7
-
55
-
-
33749590330
-
Brain-specific phosphorylation of MeCP2 regulates activity-dependent Bdnf transcription, dendritic growth, and spine maturation
-
Zhou, Z.; Hong, E. J.; Cohen, S.; Zhao, W. N.; Ho, H. Y.; Schmidt, L.; Chen, W. G.; Lin, Y.; Savner, E.; Griffith, E. C; Hu, L.; Steen, J. A.; Weitz, C. J.; Greenberg, M. E. Brain-specific phosphorylation of MeCP2 regulates activity-dependent Bdnf transcription, dendritic growth, and spine maturation. Neuron 2006, 52 (2), 255-69.
-
(2006)
Neuron
, vol.52
, Issue.2
, pp. 255-269
-
-
Zhou, Z.1
Hong, E.J.2
Cohen, S.3
Zhao, W.N.4
Ho, H.Y.5
Schmidt, L.6
Chen, W.G.7
Lin, Y.8
Savner, E.9
Griffith, E.C.10
Hu, L.11
Steen, J.A.12
Weitz, C.J.13
Greenberg, M.E.14
-
56
-
-
13444263724
-
The SWI/SNF chromatin remodeling protein Brg1 is required for vertebrate neurogenesis and mediates transactivation of Ngn and NeuroD
-
Seo, S.; Richardson, G. A.; Kroll, K. L. The SWI/SNF chromatin remodeling protein Brg1 is required for vertebrate neurogenesis and mediates transactivation of Ngn and NeuroD. Development 2005, 132 (1), 105-15.
-
(2005)
Development
, vol.132
, Issue.1
, pp. 105-115
-
-
Seo, S.1
Richardson, G.A.2
Kroll, K.L.3
-
57
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias, J. E.; Gygi, S. P. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 2007, 4 (3), 207-14.
-
(2007)
Nat. Methods
, vol.4
, Issue.3
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
58
-
-
2642545646
-
O-sulfonation of serine and threonine: Mass spectrometric detection and characterization of a new posttranslational modification in diverse proteins throughout the eukaryotes
-
Medzihradszky, K. F.; Darula, Z.; Perlson, E.; Fainzilber, M.; Chalkley, R. J.; Ball, H.; Greenbaum, D.; Bogyo, M.; Tyson, D. R.; Bradshaw, R. A.; Burlingame, A. L. O-sulfonation of serine and threonine: mass spectrometric detection and characterization of a new posttranslational modification in diverse proteins throughout the eukaryotes. Mol. Cell. Proteomics 2004, 3 (5), 429-40.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, Issue.5
, pp. 429-440
-
-
Medzihradszky, K.F.1
Darula, Z.2
Perlson, E.3
Fainzilber, M.4
Chalkley, R.J.5
Ball, H.6
Greenbaum, D.7
Bogyo, M.8
Tyson, D.R.9
Bradshaw, R.A.10
Burlingame, A.L.11
-
59
-
-
34247365096
-
Relative quantification of stable isotope labeled peptides using a linear ion trap-Orbitrap hybrid mass spectrometer
-
Venable, J. D.; Wohlschlegel, J.; McClatchy, D. B.; Park, S. K.; Yates, J. R., III. Relative quantification of stable isotope labeled peptides using a linear ion trap-Orbitrap hybrid mass spectrometer. Anal. Chem. 2007, 79 (8), 3056-64.
-
(2007)
Anal. Chem
, vol.79
, Issue.8
, pp. 3056-3064
-
-
Venable, J.D.1
Wohlschlegel, J.2
McClatchy, D.B.3
Park, S.K.4
Yates III, J.R.5
-
60
-
-
36348937958
-
Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra
-
Yu, L. R.; Zhu, Z.; Chan, K. C; Issaq, H. J.; Dimitrov, D. S.; Veenstra, T. D. Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra. J. Proteome Res. 2007, 6 (11), 4150-62.
-
(2007)
J. Proteome Res
, vol.6
, Issue.11
, pp. 4150-4162
-
-
Yu, L.R.1
Zhu, Z.2
Chan, K.C.3
Issaq, H.J.4
Dimitrov, D.S.5
Veenstra, T.D.6
-
61
-
-
4143051638
-
Energy metabolism in mammalian brain during development
-
Erecinska, M.; Cherian, S.; Silver, I. A. Energy metabolism in mammalian brain during development. Prog. Neurobiol. 2004, 73 (6), 397-445.
-
(2004)
Prog. Neurobiol
, vol.73
, Issue.6
, pp. 397-445
-
-
Erecinska, M.1
Cherian, S.2
Silver, I.A.3
-
62
-
-
20644458333
-
Phosphorylation of cysteine string protein in the brain: Developmental, regional and synaptic specificity
-
Evans, G. J.; Morgan, A. Phosphorylation of cysteine string protein in the brain: developmental, regional and synaptic specificity. Eur. J. Neurosci. 2005, 21 (10), 2671-80.
-
(2005)
Eur. J. Neurosci
, vol.21
, Issue.10
, pp. 2671-2680
-
-
Evans, G.J.1
Morgan, A.2
-
63
-
-
33748770064
-
Development-and activity-dependent regulation of SNAP-25 phosphorylation in rat brain
-
Kataoka, M.; Kuwahara, R.; Matsuo, R.; Sekiguchi, M.; Inokuchi, K.; Takahashi, M. Development-and activity-dependent regulation of SNAP-25 phosphorylation in rat brain. Neurosci. Lett. 2006, 407 (3), 258-62.
-
(2006)
Neurosci. Lett
, vol.407
, Issue.3
, pp. 258-262
-
-
Kataoka, M.1
Kuwahara, R.2
Matsuo, R.3
Sekiguchi, M.4
Inokuchi, K.5
Takahashi, M.6
-
64
-
-
33847150936
-
Developmental downregulation of histone posttranslational modifications regulates visual cortical plasticity
-
Putignano, E.; Lonetri, G.; Cancedda, L.; Ratto, G.; Costa, M.; Maffei, L.; Pizzorusso, T. Developmental downregulation of histone posttranslational modifications regulates visual cortical plasticity. Neuron 2007, 53 (5), 747-59.
-
(2007)
Neuron
, vol.53
, Issue.5
, pp. 747-759
-
-
Putignano, E.1
Lonetri, G.2
Cancedda, L.3
Ratto, G.4
Costa, M.5
Maffei, L.6
Pizzorusso, T.7
-
65
-
-
0034044227
-
Neurotrophin signal transduction in the nervous system
-
Kaplan, D. R.; Miller, F. D. Neurotrophin signal transduction in the nervous system. Curr. Opin. Neurobiol. 2000, 10 (3), 381-91.
-
(2000)
Curr. Opin. Neurobiol
, vol.10
, Issue.3
, pp. 381-391
-
-
Kaplan, D.R.1
Miller, F.D.2
-
66
-
-
34249797911
-
Wnt-Frizzled signalling and the many paths to neural development and adult brain homeostasis
-
Malaterre, J.; Ramsay, R. G.; Mantamadiotis, T. Wnt-Frizzled signalling and the many paths to neural development and adult brain homeostasis. Front. Biosci. 2007, 12, 492-506.
-
(2007)
Front. Biosci
, vol.12
, pp. 492-506
-
-
Malaterre, J.1
Ramsay, R.G.2
Mantamadiotis, T.3
-
67
-
-
0033974624
-
Expression of nerve growth factor, brain-derived neurotrophic factor, and neurotrophin-3 in the somatosensory cortex of the mature rat: Coexpression with high-affinity neurotrophin receptors
-
Pitts, A. F.; Miller, M. W. Expression of nerve growth factor, brain-derived neurotrophic factor, and neurotrophin-3 in the somatosensory cortex of the mature rat: coexpression with high-affinity neurotrophin receptors. J. Comp. Neurol. 2000, 418 (3), 241-54.
-
(2000)
J. Comp. Neurol
, vol.418
, Issue.3
, pp. 241-254
-
-
Pitts, A.F.1
Miller, M.W.2
-
68
-
-
0027493251
-
BRG1 contains a conserved domain of the SWI2/ SNF2 family necessary for normal mitotic growth and transcription
-
Khavari, P. A.; Peterson, C. L.; Tamkun, J. W.; Mendel, D. B.; Crabtree, G. R. BRG1 contains a conserved domain of the SWI2/ SNF2 family necessary for normal mitotic growth and transcription. Nature 1993, 366 (6451), 170-4.
-
(1993)
Nature
, vol.366
, Issue.6451
, pp. 170-174
-
-
Khavari, P.A.1
Peterson, C.L.2
Tamkun, J.W.3
Mendel, D.B.4
Crabtree, G.R.5
-
69
-
-
0030054665
-
The hbrm and BRG-1 proteins, components of the human SNF/ SWI complex, are phosphorylated and excluded from the condensed chromosomes during mitosis
-
Muchardt, C; Reyes, J. C; Bourachot, B.; Leguoy, E.; Yaniv, M. The hbrm and BRG-1 proteins, components of the human SNF/ SWI complex, are phosphorylated and excluded from the condensed chromosomes during mitosis. EMBO J. 1996,15 (13), 3394-402.
-
(1996)
EMBO J
, vol.15
, Issue.13
, pp. 3394-3402
-
-
Muchardt, C.1
Reyes, J.C.2
Bourachot, B.3
Leguoy, E.4
Yaniv, M.5
-
70
-
-
27544454705
-
Chromatin remodeling in neural development and plasticity
-
Hsieh, J.; Gage, F. H. Chromatin remodeling in neural development and plasticity. Curr. Opin. Cell Biol. 2005, 17 (6), 664-71.
-
(2005)
Curr. Opin. Cell Biol
, vol.17
, Issue.6
, pp. 664-671
-
-
Hsieh, J.1
Gage, F.H.2
-
71
-
-
34447249019
-
An essential switch in subunit composition of a chromatin remodeling complex during neural development
-
Lessard, J.; Wu, J. I.; Ranish, J. A.; Wan, M.; Winslow, M. M.; Staahl, B. T.; Wu, H.; Aebersold, R.; Graef, I. A.; Crabtree, G. R. An essential switch in subunit composition of a chromatin remodeling complex during neural development. Neuron 2007, 55 (2), 201-15.
-
(2007)
Neuron
, vol.55
, Issue.2
, pp. 201-215
-
-
Lessard, J.1
Wu, J.I.2
Ranish, J.A.3
Wan, M.4
Winslow, M.M.5
Staahl, B.T.6
Wu, H.7
Aebersold, R.8
Graef, I.A.9
Crabtree, G.R.10
-
72
-
-
34748887795
-
Regulation of dendritic development by neuron-specific chromatin remodeling complexes
-
Wu, J. I.; Lessard, I.; Olave, I. A.; Qiu, Z.; Ghosh, A.; Graef, I. A.; Crabtree, G. R. Regulation of dendritic development by neuron-specific chromatin remodeling complexes. Neuron 2007, 56 (1), 94-108.
-
(2007)
Neuron
, vol.56
, Issue.1
, pp. 94-108
-
-
Wu, J.I.1
Lessard, I.2
Olave, I.A.3
Qiu, Z.4
Ghosh, A.5
Graef, I.A.6
Crabtree, G.R.7
-
73
-
-
0020507697
-
A progressive syndrome of autism, dementia, ataxia, and loss of purposeful hand use in girls: Rett's syndrome: report of 35 cases
-
Hagberg, B.; Aicardi, J.; Dias, K.; Ramos, O. A progressive syndrome of autism, dementia, ataxia, and loss of purposeful hand use in girls: Rett's syndrome: report of 35 cases. Ann. Neurol. 1983, 14 (4), 471-9.
-
(1983)
Ann. Neurol
, vol.14
, Issue.4
, pp. 471-479
-
-
Hagberg, B.1
Aicardi, J.2
Dias, K.3
Ramos, O.4
-
74
-
-
0032830639
-
Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2
-
Amir, R. E.; Van den Veyver, I. B.; Wan, M.; Iran, C. Q.; Francke, U.; Zoghbi, H. Y. Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2. Nat Genet. 1999, 23 (2), 185-8.
-
(1999)
Nat Genet
, vol.23
, Issue.2
, pp. 185-188
-
-
Amir, R.E.1
Van den Veyver, I.B.2
Wan, M.3
Iran, C.Q.4
Francke, U.5
Zoghbi, H.Y.6
-
75
-
-
9744231378
-
Neurodevelopment, neuro-plasticity, and new genes for schizophrenia
-
Arnold, S. E.; Talbot, K.; Hahn, C. G. Neurodevelopment, neuro-plasticity, and new genes for schizophrenia. Prog. Brain Res. 2005, 147, 319-45.
-
(2005)
Prog. Brain Res
, vol.147
, pp. 319-345
-
-
Arnold, S.E.1
Talbot, K.2
Hahn, C.G.3
|