Autoregulation of RNA Helicase Expression in Response to Temperature Stress in Synechocystis sp. PCC 6803

PLoS ONE

Volumn 7, Issue 10, 2012, Pages

  Rosana, Albert Remus R ^a   Chamot, Danuta ^a   Owttrim, George W ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RNA HELICASE;

ARTICLE; BACTERIAL GENE; CONTROLLED STUDY; CRHR GENE; ENZYME ACTIVITY; ENZYME METABOLISM; GENE REARRANGEMENT; NONHUMAN; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; REGULATORY MECHANISM; RNA TRANSCRIPTION; SYNECHOCYSTIS; TEMPERATURE SENSE; TEMPERATURE STRESS;

BACTERIAL PROTEINS; BLOTTING, NORTHERN; BLOTTING, WESTERN; COLD TEMPERATURE; GENE EXPRESSION REGULATION, ENZYMOLOGIC; HALF-LIFE; HEAT-SHOCK RESPONSE; HOMEOSTASIS; LIGHT; MUTATION; RNA HELICASES; RNA, MESSENGER; STRESS, PHYSIOLOGICAL; SYNECHOCYSTIS; TEMPERATURE; TIME FACTORS;

CYANOBACTERIA; SYNECHOCYSTIS SP. PCC 6803;

EID: 84868290276     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0048683     Document Type: Article

References (44)

1. Fairman-Williams ME, Guenther UP, Jankowsky E, (2010) SF1 and SF2 helicases: family matters. Curr Opin Struct Biol 20: 313-324.
2. Fairman ME, Maroney PA, Wang W, Bowers HA, Gollnick P, et al. (2004) Protein displacement by DExH/D "RNA helicases" without duplex unwinding. Science 304: 730-734.
3. Bowers HA, Maroney PA, Fairman ME, Kastner B, Lührmann R, et al. (2006) Discriminatory RNP remodeling by the DEAD-box protein DED1. RNA 12: 903-912.
4. Linder P, Jankowsky E, (2011) From unwinding to clamping- the DEAD box RNA helicase family. Nat Rev Mol Cell Biol 12: 505-516.
5. Rocak S, Linder P, (2004) DEAD-box proteins: the driving forces behind RNA metabolism. Nat Rev Mol Cell Biol 5: 232-241.
6. Owttrim GW, (2006) RNA helicases and abiotic stress. Nucleic Acids Res 34: 3220-3230.
7. Linder P, Owttrim GW, (2009) Plant RNA helicases: linking aberrant and silencing RNA. Trends Plant Sci 14: 344-352.
8. Giuliodori AM, Gualerzi CO, Soto S, Vila J, Tavío MM, (2007) Review on bacterial stress topics. Ann N Y Acad Sci 1113: 95-104.
9. Lim J, Thomas T, Cavicchioli R, (2000) Low temperature regulated DEAD-box RNA helicase from the Antarctic archaeon, Methanococcoides burtonii. J Mol Biol 297: 553-567.
10. Gong Z, Lee H, Xiong L, Jagendorf A, Stevenson B, et al. (2002) RNA helicase-like protein as an early regulator of transcription factors for plant chilling and freezing tolerance. Proc Natl Acad Sci U S A 299: 11507-11512.
11. Charollais J, Pflieger D, Vinh J, Dreyfus M, Iost I, (2003) The DEAD-box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coli. Mol Microbiol 48: 1253-1265.
12. Charollais J, Dreyfus M, Iost I, (2004) CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit. Nucleic Acids Res 32: 2751-2759.
13. Hunger K, Beckering CL, Wiegeshoff F, Graumann PL, Marahiel MA, (2006) Cold-induced putative DEAD box RNA helicases CshA and CshB are essential for cold adaptation and interact with cold shock protein B in Bacillus subtilis. J Bacteriol 188: 240-248.
14. Kim JS, Kim KA, Oh TR, Park CM, Kang H, (2008) Functional characterization of DEAD-box RNA helicases in Arabidopsis thaliana under abiotic stress conditions. Plant Cell Physiol 49: 1563-1571.
15. Pandiani F, Chamot S, Brillard J, Carlin F, Nguyen-the C, et al. (2011) Role of the five RNA helicases in the adaptive response of Bacillus cereus ATCC 14579 cells to temperature, pH, and oxidative stresses. Appl Environ Microbiol 77: 5604-5609.
16. Khemici V, Toesca I, Poljak L, Vanzo NF, Carpousis AJ, (2004) The RNase E of Escherichia coli has at least two binding sites for DEAD-box RNA helicases: Functional replacement of RhlB by RhlE. Mol Microbiol 54: 1422-1430.
17. Prud'homme-Genereux A, Beran RK, Iost I, Ramey CS, Mackie GA, et al. (2004) Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: Evidence for a 'cold shock degradosome'. Mol Microbiol 54: 1409-1421.
18. Purusharth RI, Klein F, Sulthana S, Jager S, Jagannadham MV, et al. (2005) Exoribonuclease R interacts with endoribonuclease E and an RNA helicase in the psychrotrophic bacterium Pseudomonas syringae Lz4W. J Biol Chem 280: 14572-14578.
19. Iost I, Dreyfus M, (2006) DEAD-box RNA helicases in Escherichia coli. Nucleic Acids Res 34: 4189-4197.
20. Chamot D, Magee WC, Yu E, Owttrim GW, (1999) A cold shock-induced cyanobacterial RNA helicase. J Bacteriol 181: 1728-1732.
21. Chamot D, Owttrim GW, (2000) Regulation of cold shock-induced RNA helicase gene expression in the cyanobacterium Anabaena sp. strain PCC 7120. J Bacteriol 182: 1251-1256.
22. Kujat SL, Owttrim GW, (2000) Redox-regulated RNA helicase expression. Plant Physiol 124: 703-714.
23. Yu E, Owttrim GW, (2000) Characterization of the cold stress-induced cyanobacterial DEAD-box protein CrhC as an RNA helicase. Nucleic Acids Res 28: 3926-3934.
24. El-Fahmawi B, Owttrim GW, (2003) Polar-biased localization of the cold stress-induced RNA helicase, CrhC, in the cyanobacterium Anabaena sp. strain PCC 7120. Mol Microbiol 50: 1439-1448.
25. Chamot D, Colvin KR, Kujat-Choy SL, Owttrim GW, (2005) RNA structural rearrangement via unwinding and annealing by the cyanobacterial RNA helicase, CrhR. J Biol Chem 280: 2036-2044.
26. Vinnemeier J, Hagemann M, (1999) Identification of salt-regulated genes in the genome of the cyanobacterium Synechocystis sp. strain PCC 6803 by subtractive RNA hybridization. Arch Microbiol 172: 377-386.
27. Rosana ARR, Ventakesh M, Chamot D, Patterson-Fortin LM, Tarassova O, et al. (2012) Inactivation of a low temperature induced RNA helicase in Synechocystis sp. PCC 6803: Physiological and morphological consequences. Plant Cell Physiol 53: 646-658.
28. Owttrim GW, (2012) RNA helicases in cyanobacteria: biochemical and molecular approaches. Methods Enzymol 511: 385-403.
29. López-Maury L, García-Domínguez M, Florencio FJ, Reyes JC, (2002) A two-component signal transduction system involved in nickel sensing in the cyanobacterium Synechocystis sp. PCC 6803. Mol Microbiol 43: 247-256.
30. Mitschke J, Vioque A, Haas F, Hess WR, Muro-Pastor AM, (2011) Dynamics of transcriptional start site selection during nitrogen stress-induced cell differentiation in Anabaena sp. PCC7120. Proc Natl Acad Sci U S A 108: 20130-20135.
31. Shimura Y, Shiraiwa Y, Suzuki I, (2012) Characterization of the subdomains in the N-terminal region of histidine kinase Hik33 in the cyanobacterium Synechocystis sp. PCC 6803. Plant Cell Physiol 53: 1255-1266.
32. Schneider CA, Rasband WS, Eliceiri KW, (2012) NIH Image to ImageJ: 25 years of image analysis. Nature Methods 9: 671-675.
33. Fuller-Pace FV, Ali S, (2008) The DEAD box RNA helicases p68 (Ddx5) and p72 (Ddx17): novel transcriptional co-regulators. Biochem Soc Trans 36: 609-612.
34. Goldenberg D, Azar I, Oppenheim AB, (1996) Differential mRNA stability of the cspA gene in the cold-shock response of Escherichia coli. Mol Microbiol 19: 241-248.
35. Prud'homme-Généreux A, Beran RK, Iost I, Ramey CS, Mackie GA, et al. (2004) Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'. Mol Microbiol 54: 1409-1421.
36. Regonesi ME, Del Favero M, Basilico F, Briani F, Benazzi L, et al. (2006) Analysis of the Escherichia coli RNA degradosome composition by a proteomic approach. Biochimie 88: 151-161.
37. Nickel M, Homuth G, Böhnisch C, Mäder U, Schweder T, (2004) Cold induction of the Bacillus subtilis bkd operon is mediated by increased mRNA stability. Mol Genet Genomics 272: 98-107.
38. Arraiano CM, Andrade JM, Domingues S, Guinote IB, Malecki M, et al. (2010) The critical role of RNA processing and degradation in the control of gene expression. FEMS Microbiol Rev 34: 883-923.
39. Sato N, (1995) A family of cold-regulated RNA-binding protein genes in the cyanobacterium Anabaena variabilis M3. Nucleic Acids Res 23: 2161-2167.
40. Aguilar PS, Lopez P, de Mendoza D, (1999) Transcriptional control of the low temperature-inducible des gene, encoding the delta5 desaturase of Bacillus subtilis. J Bacteriol 181: 7028-7033.
41. Shenhar Y, Rasouly A, Biran D, Ron EZ, (2009) Adaptation of Escherichi coli to elevated temperatures involves a change in stability of heat shock gene transcripts. Environ Microbiol 11: 2989-2997.
42. Gottesman S, (2003) Proteolysis in bacterial regulatory circuits. Annu Rev Cell Dev Biol 19: 565-587.
43. Gur E, Biran D, Ron EZ, (2011) Regulated proteolysis in Gram-negative bacteria-how and when? Nat Rev Microbiol 9: 839-848.
44. Meyer AS, Baker TA, (2011) Proteolysis in the Escherichia coli heat shock response: a player at many levels. Curr Opin Microbiol 14: 194-199.