-
2
-
-
0028269435
-
Copurification of E. coli RNase e and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation
-
A.J. Carpousis, G. Van Houwe, C. Ehretsmann, and H.M. Krisch Copurification of E. coli RNase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation Cell 76 1994 889 900
-
(1994)
Cell
, vol.76
, pp. 889-900
-
-
Carpousis, A.J.1
Van Houwe, G.2
Ehretsmann, C.3
Krisch, H.M.4
-
3
-
-
0027945686
-
A protein complex mediating mRNA degradation in Escherichia coli
-
B. Py, H. Causton, E.A. Mudd, and C.F. Higgins A protein complex mediating mRNA degradation in Escherichia coli Mol. Microbiol. 14 1994 717 729
-
(1994)
Mol. Microbiol.
, vol.14
, pp. 717-729
-
-
Py, B.1
Causton, H.2
Mudd, E.A.3
Higgins, C.F.4
-
4
-
-
0029922992
-
A DEAD-box RNA helicase in the Escherichia coli RNA degradosome
-
B. Py, C.F. Higgins, H.M. Krisch, and A.J. Carpousis A DEAD-box RNA helicase in the Escherichia coli RNA degradosome Nature 381 1996 169 172
-
(1996)
Nature
, vol.381
, pp. 169-172
-
-
Py, B.1
Higgins, C.F.2
Krisch, H.M.3
Carpousis, A.J.4
-
6
-
-
0036549769
-
The Escherichia coli RNA degradosome: Structure, function and relationship in other ribonucleolytic multienzyme complexes
-
A.J. Carpousis The Escherichia coli RNA degradosome: structure, function and relationship in other ribonucleolytic multienzyme complexes Biochem. Soc. Trans. 30 2002 150 155
-
(2002)
Biochem. Soc. Trans.
, vol.30
, pp. 150-155
-
-
Carpousis, A.J.1
-
7
-
-
4344573414
-
The exosome, a molecular machine for controlled RNA degradation in both nucleus and cytoplasm
-
R. Raijmakers, G. Schilders, and G.J. Pruijn The exosome, a molecular machine for controlled RNA degradation in both nucleus and cytoplasm Eur. J. Cell Biol. 83 2004 175 183
-
(2004)
Eur. J. Cell Biol.
, vol.83
, pp. 175-183
-
-
Raijmakers, R.1
Schilders, G.2
Pruijn, G.J.3
-
8
-
-
3543037550
-
Ribonuclease e organizes the protein interactions in the Escherichia coli RNA degradosome
-
N.F. Vanzo, Y.S. Li, B. Py, E. Blum, C.F. Higgins, L.C. Raynal, H.M. Krisch, and A.J. Carpousis Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome Genes Dev. 12 1998 2770 2781
-
(1998)
Genes Dev.
, vol.12
, pp. 2770-2781
-
-
Vanzo, N.F.1
Li, Y.S.2
Py, B.3
Blum, E.4
Higgins, C.F.5
Raynal, L.C.6
Krisch, H.M.7
Carpousis, A.J.8
-
9
-
-
0032578486
-
The endoribonucleolytic N-terminal half of Escherichia coli RNase e is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half, which is sufficient for degradosome assembly
-
V.R. Kaberdin, A. Miczak, J.S. Jakobsen, S. Lin-Chao, K.J. McDowall, and A. von Gabain The endoribonucleolytic N-terminal half of Escherichia coli RNase E is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half, which is sufficient for degradosome assembly Proc. Natl. Acad. Sci. USA 95 1998 11637 11642
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 11637-11642
-
-
Kaberdin, V.R.1
Miczak, A.2
Jakobsen, J.S.3
Lin-Chao, S.4
McDowall, K.J.5
Von Gabain, A.6
-
10
-
-
0034804409
-
Preparation of Escherichia coli Rne protein and reconstitution of RNA degradosome
-
G.A. Mackie, G.A. Coburn, X. Miao, D.J. Briant, and A. Prud'homme-Ǵńreux Preparation of Escherichia coli Rne protein and reconstitution of RNA degradosome Methods Enzymol. 342 2001 346 356
-
(2001)
Methods Enzymol.
, vol.342
, pp. 346-356
-
-
MacKie, G.A.1
Coburn, G.A.2
Miao, X.3
Briant, D.J.4
Prud'Homme- Ǵńreux, A.5
-
11
-
-
0033214259
-
Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3′ exonuclease and a DEAD-box RNA helicase
-
G.A. Coburn, X. Miao, D.J. Briant, and G.A. Mackie Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3′ exonuclease and a DEAD-box RNA helicase Genes Dev. 13 1999 2594 2603
-
(1999)
Genes Dev.
, vol.13
, pp. 2594-2603
-
-
Coburn, G.A.1
Miao, X.2
Briant, D.J.3
MacKie, G.A.4
-
12
-
-
8544261105
-
Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli
-
T. Morita, H. Kawamoto, T. Mizota, T. Inada, and H. Aiba Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli Mol. Microbiol. 54 2004 1063 1075
-
(2004)
Mol. Microbiol.
, vol.54
, pp. 1063-1075
-
-
Morita, T.1
Kawamoto, H.2
Mizota, T.3
Inada, T.4
Aiba, H.5
-
13
-
-
0030779484
-
Polyphosphate kinase is a component of the Escherichia coli RNA degradosome
-
E. Blum, B. Py, A.J. Carpousis, and C.F. Higgins Polyphosphate kinase is a component of the Escherichia coli RNA degradosome Mol. Microbiol. 26 1997 387 398
-
(1997)
Mol. Microbiol.
, vol.26
, pp. 387-398
-
-
Blum, E.1
Py, B.2
Carpousis, A.J.3
Higgins, C.F.4
-
15
-
-
9644284618
-
Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: Evidence for a 'cold shock degradosome'
-
A. Prud'homme-Ǵńreux, R.K. Beran, I. Iost, C.S. Ramey, G.A. Mackie, and R.W. Simons Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome' Mol. Microbiol. 54 2004 1409 1421
-
(2004)
Mol. Microbiol.
, vol.54
, pp. 1409-1421
-
-
Prud'Homme-Ǵńreux, A.1
Beran, R.K.2
Iost, I.3
Ramey, C.S.4
MacKie, G.A.5
Simons, R.W.6
-
16
-
-
9644277144
-
The RNase e of Escherichia coli has at least two binding sites for DEAD-box RNA helicases: Functional replacement of RhlB by RhlE
-
V. Khemici, I. Toesca, L. Poljak, N.F. Vanzo, and A.J. Carpousis The RNase E of Escherichia coli has at least two binding sites for DEAD-box RNA helicases: functional replacement of RhlB by RhlE Mol. Microbiol. 54 2004 1422 1430
-
(2004)
Mol. Microbiol.
, vol.54
, pp. 1422-1430
-
-
Khemici, V.1
Toesca, I.2
Poljak, L.3
Vanzo, N.F.4
Carpousis, A.J.5
-
17
-
-
0032970686
-
Poly(A) polymerase I of Escherichia coli: Characterization of the catalytic domain, an RNA binding site and regions for the interaction with proteins involved in mRNA degradation
-
L.C. Raynal, and A.J. Carpousis Poly(A) polymerase I of Escherichia coli: characterization of the catalytic domain, an RNA binding site and regions for the interaction with proteins involved in mRNA degradation Mol. Microbiol. 32 1999 765 775
-
(1999)
Mol. Microbiol.
, vol.32
, pp. 765-775
-
-
Raynal, L.C.1
Carpousis, A.J.2
-
18
-
-
0035943737
-
Escherichia coli poly(A)-binding proteins that interact with components of degradosomes or impede RNA decay mediated by polynucleotide phosphorylase and RNase e
-
Y. Feng, H. Huang, J. Liao, and S.N. Cohen Escherichia coli poly(A)-binding proteins that interact with components of degradosomes or impede RNA decay mediated by polynucleotide phosphorylase and RNase E J. Biol. Chem. 276 2001 31651 31656
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 31651-31656
-
-
Feng, Y.1
Huang, H.2
Liao, J.3
Cohen, S.N.4
-
19
-
-
0035824631
-
Advances in proteome analysis by mass spectrometry
-
T.J. Griffin, and R. Aebersold Advances in proteome analysis by mass spectrometry J. Biol. Chem. 276 2001 45497 45500
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 45497-45500
-
-
Griffin, T.J.1
Aebersold, R.2
-
20
-
-
0034662907
-
Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology
-
S.P. Gygi, G.L. Corthals, Y. Zhang, Y. Rochon, and R. Aebersold Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology Proc. Natl. Acad. Sci. USA 97 2000 9390 9395
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9390-9395
-
-
Gygi, S.P.1
Corthals, G.L.2
Zhang, Y.3
Rochon, Y.4
Aebersold, R.5
-
21
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
S.P. Gygi, B. Rist, S.A. Gerber, F. Turecek, M.H. Gelb, and R. Aebersold Quantitative analysis of complex protein mixtures using isotope-coded affinity tags Nat. Biotechnol. 17 1999 994 999
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
22
-
-
0035582244
-
An automated multidimensional protein identification technology for shotgun proteomics
-
D.A. Wolters, M.P. Washburn, and J.R. Yates III An automated multidimensional protein identification technology for shotgun proteomics Anal. Chem. 73 2001 5683 5690
-
(2001)
Anal. Chem.
, vol.73
, pp. 5683-5690
-
-
Wolters, D.A.1
Washburn, M.P.2
Yates III, J.R.3
-
23
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
K.A. Datsenko, and B.L. Wanner One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products Proc. Natl. Acad. Sci. USA 97 2000 6640 6645
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
24
-
-
0025048776
-
Mutations altering heat shock specific subunit of RNA polymerase suppress major cellular defects of E. coli mutants lacking the DnaK chaperone
-
B. Bukau, and G.C. Walker Mutations altering heat shock specific subunit of RNA polymerase suppress major cellular defects of E. coli mutants lacking the DnaK chaperone EMBO J. 9 1990 4027 4036
-
(1990)
EMBO J.
, vol.9
, pp. 4027-4036
-
-
Bukau, B.1
Walker, G.C.2
-
25
-
-
0013797789
-
Growth abnormalities in Hfr derivatives of Escherichia coli strain C
-
I. Sasaki, and G. Bertani Growth abnormalities in Hfr derivatives of Escherichia coli strain C J. Gen. Microbiol. 40 1965 365 376
-
(1965)
J. Gen. Microbiol.
, vol.40
, pp. 365-376
-
-
Sasaki, I.1
Bertani, G.2
-
26
-
-
0029787968
-
Polynucleotide phosphorylase of Escherichia coli is required for the establishment of bacteriophage P4 immunity
-
F. Piazza, M. Zappone, M. Sana, F. Briani, and G. Dehò Polynucleotide phosphorylase of Escherichia coli is required for the establishment of bacteriophage P4 immunity J. Bacteriol. 178 1996 5513 5521
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5513-5521
-
-
Piazza, F.1
Zappone, M.2
Sana, M.3
Briani, F.4
Dehò, G.5
-
28
-
-
2342625898
-
A mutation in polynucleotide phosphorylase from Escherichia coli impairing RNA binding and degradosome stability
-
M.E. Regonesi, F. Briani, A. Ghetta, S. Zangrossi, D. Ghisotti, P. Tortora, and G. Dehò A mutation in polynucleotide phosphorylase from Escherichia coli impairing RNA binding and degradosome stability Nucleic Acids Res. 32 2004 1006 1017
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1006-1017
-
-
Regonesi, M.E.1
Briani, F.2
Ghetta, A.3
Zangrossi, S.4
Ghisotti, D.5
Tortora, P.6
Dehò, G.7
-
29
-
-
0026457866
-
Genetic analysis of the immunity region of phage-plasmid P4
-
D. Ghisotti, R. Chiaramonte, F. Forti, S. Zangrossi, G. Sironi, and G. Dehò Genetic analysis of the immunity region of phage-plasmid P4 Mol. Microbiol. 6 1992 3405 3413
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 3405-3413
-
-
Ghisotti, D.1
Chiaramonte, R.2
Forti, F.3
Zangrossi, S.4
Sironi, G.5
Dehò, G.6
-
30
-
-
0344348885
-
Photometric assay for polynucleotide phosphorylase
-
L. Fontanella, S. Pozzuolo, A. Costanzo, R. Favaro, G. Dehò, and P. Tortora Photometric assay for polynucleotide phosphorylase Anal. Biochem. 269 1999 353 358
-
(1999)
Anal. Biochem.
, vol.269
, pp. 353-358
-
-
Fontanella, L.1
Pozzuolo, S.2
Costanzo, A.3
Favaro, R.4
Dehò, G.5
Tortora, P.6
-
31
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
U.K. Laemmli Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 227 1970 680 685
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
33
-
-
0002725941
-
Multidimensional protein identification technology as an effective tool for proteomics
-
D. Lin, A. Alpert, and J.3. Yates Multidimensional protein identification technology as an effective tool for proteomics Am.Genomic/Proteomic Technol. 1 2001 38 46
-
(2001)
Am.Genomic/Proteomic Technol. 1
, pp. 38-46
-
-
Lin, D.1
Alpert, A.2
Yates III, J.3
-
34
-
-
0000857494
-
An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database
-
J. Eng, A. McCormack, and J. Yates An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database J. Am. Soc. Mass Spectrom. 5 1994 976 989
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.1
McCormack, A.2
Yates, J.3
-
35
-
-
3543023287
-
Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture
-
E. Durr, J. Yu, K.M. Krasinska, L.A. Carver, J.R. Yates, J.E. Testa, P. Oh, and J.E. Schnitzer Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture Nat. Biotechnol. 22 2004 985 992
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 985-992
-
-
Durr, E.1
Yu, J.2
Krasinska, K.M.3
Carver, L.A.4
Yates, J.R.5
Testa, J.E.6
Oh, P.7
Schnitzer, J.E.8
-
36
-
-
21744435256
-
Identification of proteins released by pancreatic cancer cells by multidimensional protein identification technology: A strategy for identification of novel cancer markers
-
P. Mauri, A. Scarpa, A.C. Nascimbeni, L. Benazzi, E. Parmagnani, A. Mafficini, M. Della Peruta, C. Bassi, K. Miyazaki, and C. Sorio Identification of proteins released by pancreatic cancer cells by multidimensional protein identification technology: a strategy for identification of novel cancer markers FASEB J. 19 2005 1125 1127
-
(2005)
FASEB J.
, vol.19
, pp. 1125-1127
-
-
Mauri, P.1
Scarpa, A.2
Nascimbeni, A.C.3
Benazzi, L.4
Parmagnani, E.5
Mafficini, A.6
Della Peruta, M.7
Bassi, C.8
Miyazaki, K.9
Sorio, C.10
-
37
-
-
0014806605
-
Kinetics of polymerization and phosphorolysis reactions of Escherichia coli polynucleotide phosphorylase. Evidence for multiple binding of polynucleotide in phosphorolysis
-
T. Godefroy Kinetics of polymerization and phosphorolysis reactions of Escherichia coli polynucleotide phosphorylase. Evidence for multiple binding of polynucleotide in phosphorolysis Eur. J. Biochem. 14 1970 222 231
-
(1970)
Eur. J. Biochem.
, vol.14
, pp. 222-231
-
-
Godefroy, T.1
-
38
-
-
0017648969
-
Purification and characterization of polynucleotide phosphorylase from Escherichia coli. Probe for the analysis of 3′ sequences of RNA
-
H. Soreq, and U.Z. Littauer Purification and characterization of polynucleotide phosphorylase from Escherichia coli. Probe for the analysis of 3′ sequences of RNA J. Biol. Chem. 252 1977 6885 6888
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 6885-6888
-
-
Soreq, H.1
Littauer, U.Z.2
-
39
-
-
0016421634
-
Enolase from Escherichia coli
-
T.G. Spring, and F. Wold Enolase from Escherichia coli Methods Enzymol. 42 1975 323 329
-
(1975)
Methods Enzymol.
, vol.42
, pp. 323-329
-
-
Spring, T.G.1
Wold, F.2
-
40
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
H. Liu, R.G. Sadygov, and J.R. Yates III A model for random sampling and estimation of relative protein abundance in shotgun proteomics Anal. Chem. 76 2004 4193 4201
-
(2004)
Anal. Chem.
, vol.76
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates III, J.R.3
-
41
-
-
0348142993
-
Changes in the protein expression of yeast as a function of carbon source
-
J. Gao, G.J. Opiteck, M.S. Friedrichs, A.R. Dongre, and S.A. Hefta Changes in the protein expression of yeast as a function of carbon source J. Proteome Res. 2 2003 643 649
-
(2003)
J. Proteome Res.
, vol.2
, pp. 643-649
-
-
Gao, J.1
Opiteck, G.J.2
Friedrichs, M.S.3
Dongre, A.R.4
Hefta, S.A.5
-
42
-
-
0027250040
-
Escherichia coli endoribonuclease RNase E: Autoregulation of expression and site-specific cleavage of mRNA
-
E.A. Mudd, and C.F. Higgins Escherichia coli endoribonuclease RNase E: autoregulation of expression and site-specific cleavage of mRNA Mol. Microbiol. 9 1993 557 568
-
(1993)
Mol. Microbiol.
, vol.9
, pp. 557-568
-
-
Mudd, E.A.1
Higgins, C.F.2
-
43
-
-
0028797303
-
RNase e autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: Unusual sensitivity of the rne transcript to RNase e activity
-
C. Jain, and J.G. Belasco RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: unusual sensitivity of the rne transcript to RNase E activity Genes Dev. 9 1995 84 96
-
(1995)
Genes Dev.
, vol.9
, pp. 84-96
-
-
Jain, C.1
Belasco, J.G.2
-
44
-
-
0029438136
-
Autoregulation of RNase e synthesis in Escherichia coli
-
C. Jain, and J.G. Belasco Autoregulation of RNase E synthesis in Escherichia coli Nucleic Acids Symp. Ser. 1995 85 88
-
(1995)
Nucleic Acids Symp. Ser.
, pp. 85-88
-
-
Jain, C.1
Belasco, J.G.2
-
45
-
-
0036197752
-
RNase e levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters
-
M.C. Ow, Q. Liu, B.K. Mohanty, M.E. Andrew, V.F. Maples, and S.R. Kushner RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters Mol. Microbiol. 43 2002 159 171
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 159-171
-
-
Ow, M.C.1
Liu, Q.2
Mohanty, B.K.3
Andrew, M.E.4
Maples, V.F.5
Kushner, S.R.6
-
46
-
-
0029889965
-
RNase e polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli
-
M. Kido, K. Yamanaka, T. Mitani, H. Niki, T. Ogura, and S. Hiraga RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli J. Bacteriol. 178 1996 3917 3925
-
(1996)
J. Bacteriol.
, vol.178
, pp. 3917-3925
-
-
Kido, M.1
Yamanaka, K.2
Mitani, T.3
Niki, H.4
Ogura, T.5
Hiraga, S.6
|