-
2
-
-
79960937465
-
Fractal symmetry of protein interior: What have we learned?
-
Banerji A, Ghosh I (2011) Fractal symmetry of protein interior: What have we learned? Cell Mol Life Sci 68:2711-2737
-
(2011)
Cell Mol Life Sci
, vol.68
, pp. 2711-2737
-
-
Banerji, A.1
Ghosh, I.2
-
3
-
-
84872886994
-
The protein surface as a thermodynamic frontier: A fractal approach
-
Tadashi M (ed). In-Tech, ISBN 978-953-307-980-6, available from
-
PereyraM,Méndez E (2011) The protein surface as a thermodynamic frontier: A fractal approach. In: Tadashi M (ed) Application of thermodynamics to biological and materialsscience. In-Tech, ISBN 978-953-307-980-6, available from: Http://www.intechopen.com/ books/show/title/application-of-thermodynamics- to-biological-andmaterials-science
-
(2011)
Application of Thermodynamics to Biological and Materialsscience
-
-
Pereyra, M.1
Méndez, E.2
-
4
-
-
0033613904
-
Protein surface roughness and small molecular binding sites
-
Pettit FK, Bowie JU (1999) Protein surface roughness and small molecular binding sites. J Mol Biol 285:1377-1382
-
(1999)
J Mol Biol
, vol.285
, pp. 1377-1382
-
-
Pettit, F.K.1
Bowie, J.U.2
-
5
-
-
0000751873
-
Selfsimilarity of solvent-accessible surfaces of biological and synthetical macromolecules
-
Zachmann C-D, Kast SM, Sariban A, Brickmann J (1993) Selfsimilarity of solvent-accessible surfaces of biological and synthetical macromolecules. J Comput Chem 14:1290-1300
-
(1993)
J Comput Chem
, vol.14
, pp. 1290-1300
-
-
Zachmann, C.-D.1
Kast, S.M.2
Sariban, A.3
Brickmann, J.4
-
6
-
-
84866070802
-
A study of interface roughness of heteromeric obligate and non-obligate protein-protein complexes
-
Bera I, Ray S (2009) A study of interface roughness of heteromeric obligate and non-obligate protein-protein complexes. Bioinformation 4:210-215
-
(2009)
Bioinformation
, vol.4
, pp. 210-215
-
-
Bera, I.1
Ray, S.2
-
7
-
-
0022347081
-
Fractal surfaces of proteins
-
Lewis M, Rees DC (1985) Fractal surfaces of proteins. Science 230:1163-1165
-
(1985)
Science
, vol.230
, pp. 1163-1165
-
-
Lewis, M.1
Rees, D.C.2
-
8
-
-
0033527349
-
Transmembrane and water-soluble helix bundles display reverse patterns of surface roughness
-
Renthal R (1999) Transmembrane and water-soluble helix bundles display reverse patterns of surface roughness. Biochem Biophys Res Commun 263:714-717
-
(1999)
Biochem Biophys Res Commun
, vol.263
, pp. 714-717
-
-
Renthal, R.1
-
9
-
-
70350536555
-
Coexistence of flexibility and stability of proteins: An equation of state
-
de Leeuw M, Reuveni S, Klafter J, Granek R (2009) Coexistence of flexibility and stability of proteins: An equation of state. PLoS ONE 4:e7296
-
(2009)
PLoS ONE
, vol.4
-
-
De Leeuw, M.1
Reuveni, S.2
Klafter, J.3
Granek, R.4
-
10
-
-
42149181885
-
Structural diversity of G protein-coupled receptors and significance for drug discovery
-
Lagerström MC, Schiöth HB (2008) Structural diversity of G protein-coupled receptors and significance for drug discovery. Nat Rev Drug Discov 7:339-3357
-
(2008)
Nat Rev Drug Discov
, vol.7
, pp. 339-3357
-
-
Lagerström, M.C.1
Schiöth, H.B.2
-
12
-
-
77951985712
-
Allosteric ligands for G protein-coupled receptors: A novel strategy with attractive therapeutic opportunities
-
De Amici M, Dallanoce C, Holzgrabe U, Tränkle C, Mohr K (2010) Allosteric ligands for G protein-coupled receptors: A novel strategy with attractive therapeutic opportunities. Med Res Rev 30:463-549
-
(2010)
Med Res Rev
, vol.30
, pp. 463-549
-
-
De Amici, M.1
Dallanoce, C.2
Holzgrabe, U.3
Tränkle, C.4
Mohr, K.5
-
13
-
-
78049523087
-
The family of G protein-coupled receptors: An example of membrane proteins
-
Tikhonova IG, Fourmy D (2010) The family of G protein-coupled receptors: An example of membrane proteins. Methods Mol Biol 654:441-454
-
(2010)
Methods Mol Biol
, vol.654
, pp. 441-454
-
-
Tikhonova, I.G.1
Fourmy, D.2
-
14
-
-
0037020329
-
Drug design strategies for targeting G protein-coupled receptors
-
Klabunde T, Hessler G (2002) Drug design strategies for targeting G protein-coupled receptors. Chem Bio Chem 3:928-944
-
(2002)
Chem Bio Chem
, vol.3
, pp. 928-944
-
-
Klabunde, T.1
Hessler, G.2
-
15
-
-
36448995359
-
High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor
-
Cherezov V, Rosenbaum DM, Hanson MA, Rasmussen SG, Thian FS, Kobilka TS, Choi HJ, Kuhn P, Weis WI, Kobilka BK, Stevens RC (2007) High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor. Science 318:1258-1265
-
(2007)
Science
, vol.318
, pp. 1258-1265
-
-
Cherezov, V.1
Rosenbaum, D.M.2
Hanson, M.A.3
Rasmussen, S.G.4
Thian, F.S.5
Kobilka, T.S.6
Choi, H.J.7
Kuhn, P.8
Weis, W.I.9
Kobilka, B.K.10
Stevens, R.C.11
-
16
-
-
44649172481
-
A specific cholesterol binding site is established by the 2.8 Å structure of the human beta2-adrenergic receptor
-
Hanson MA, Cherezov V, Griffith MT, Roth CB, Jaakola VP, Chien EY, Velasquez J, Kuhn P, Stevens RC (2008) A specific cholesterol binding site is established by the 2.8 Å structure of the human beta2-adrenergic receptor. Structure 16:897-890
-
(2008)
Structure
, vol.16
, pp. 897-890
-
-
Hanson, M.A.1
Cherezov, V.2
Griffith, M.T.3
Roth, C.B.4
Jaakola, V.P.5
Chien, E.Y.6
Velasquez, J.7
Kuhn, P.8
Stevens, R.C.9
-
17
-
-
77955779227
-
Conserved binding mode of human beta2 adrenergic receptor inverse agonists and antagonist revealed by X-ray crystallography
-
Wacker D, Fenalti G, Brown MA, Katritch V, Abagyan R, Cherezov V, Stevens RC (2010) Conserved binding mode of human beta2 adrenergic receptor inverse agonists and antagonist revealed by X-ray crystallography. J Am Chem Soc 132:11443-11445
-
(2010)
J Am Chem Soc
, vol.132
, pp. 11443-11445
-
-
Wacker, D.1
Fenalti, G.2
Brown, M.A.3
Katritch, V.4
Abagyan, R.5
Cherezov, V.6
Stevens, R.C.7
-
18
-
-
56749103466
-
The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist
-
Jaakola VP, Griffith MT, Hanson MA, Cherezov V, Chien EY, Lane JR, Ijzerman AP, Stevens RC (2008) The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist. Science 322:1211-1217
-
(2008)
Science
, vol.322
, pp. 1211-1217
-
-
Jaakola, V.P.1
Griffith, M.T.2
Hanson, M.A.3
Cherezov, V.4
Chien, E.Y.5
Lane, J.R.6
Ijzerman, A.P.7
Stevens, R.C.8
-
19
-
-
78449305788
-
Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist
-
Chien EY, Liu W, Zhao Q, Katritch V, Han GW, Hanson MA, Shi L, Newman AH, Javitch JA, Cherezov V, Stevens RC (2010) Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist. Science 330:1091-1095
-
(2010)
Science
, vol.330
, pp. 1091-1095
-
-
Chien, E.Y.1
Liu, W.2
Zhao, Q.3
Katritch, V.4
Han, G.W.5
Hanson, M.A.6
Shi, L.7
Newman, A.H.8
Javitch, J.A.9
Cherezov, V.10
Stevens, R.C.11
-
20
-
-
78651411166
-
Structure of a nanobody-stabilized active state of the ß(2) adrenoceptor
-
Rasmussen SG, Choi HJ, Fung JJ, Pardon E, Casarosa P, Chae PS, Devree BT, Rosenbaum DM, Thian FS, Kobilka TS, Schnapp A, Konetzki I, Sunahara RK, Gellman SH, Pautsch A, Steyaert J, Weis WI, Kobilka BK (2011) Structure of a nanobody-stabilized active state of the ß(2) adrenoceptor. Nature 469:175-180
-
(2011)
Nature
, vol.469
, pp. 175-180
-
-
Rasmussen, S.G.1
Choi, H.J.2
Fung, J.J.3
Pardon, E.4
Casarosa, P.5
Chae, P.S.6
Devree, B.T.7
Rosenbaum, D.M.8
Thian, F.S.9
Kobilka, T.S.10
Schnapp, A.11
Konetzki, I.12
Sunahara, R.K.13
Gellman, S.H.14
Pautsch, A.15
Steyaert, J.16
Weis, W.I.17
Kobilka, B.K.18
-
21
-
-
79959564813
-
Agonist-bound adenosine A(2A) receptor structures reveal common features of GPCR activation
-
Lebon G, Warne T, Edwards PC, Bennett K, Langmead CJ, Leslie AG, Tate CG (2011) Agonist-bound adenosine A(2A) receptor structures reveal common features of GPCR activation. Nature 474:521-525
-
(2011)
Nature
, vol.474
, pp. 521-525
-
-
Lebon, G.1
Warne, T.2
Edwards, P.C.3
Bennett, K.4
Langmead, C.J.5
Leslie, A.G.6
Tate, C.G.7
-
22
-
-
10344223464
-
Making optimal use of empirical energy functions: Force-field parameterization in crystal space
-
Krieger E, Darden T, Nabuurs SB, Finkelstein A, Vriend G (2004) Making optimal use of empirical energy functions: Force-field parameterization in crystal space. Proteins 57:678-683
-
(2004)
Proteins
, vol.57
, pp. 678-683
-
-
Krieger, E.1
Darden, T.2
Nabuurs, S.B.3
Finkelstein, A.4
Vriend, G.5
-
23
-
-
0036191007
-
Models@Home: Distributed computing in bioinformatics using a screensaver based approach
-
Krieger E, Vriend G (2002) Models@Home: Distributed computing in bioinformatics using a screensaver based approach. Bioinformatics 18:315-318
-
(2002)
Bioinformatics
, vol.18
, pp. 315-318
-
-
Krieger, E.1
Vriend, G.2
-
24
-
-
0030040323
-
Reduced surface: An efficient way to compute molecular surfaces
-
Sanner MF, Olson AJ, Spehner JC (1996) Reduced surface: An efficient way to compute molecular surfaces. Biopolymers 38:305-320
-
(1996)
Biopolymers
, vol.38
, pp. 305-320
-
-
Sanner, M.F.1
Olson, A.J.2
Spehner, J.C.3
-
25
-
-
84863304598
-
R: A language and environment for statistical computing
-
R Development Core Team, Vienna
-
R Development Core Team (2010) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna
-
(2010)
R Foundation for Statistical Computing
-
-
-
26
-
-
33750398103
-
Bio3d: An R package for the comparative analysis of protein structures
-
Grant BJ, Rodrigues APC, ElSawy KM, McCammon JA, Caves LSD (2006) Bio3d: An R package for the comparative analysis of protein structures. Bioinformatics 22:2695-2696
-
(2006)
Bioinformatics
, vol.22
, pp. 2695-2696
-
-
Grant, B.J.1
Rodrigues, A.P.C.2
ElSawy, K.M.3
McCammon, J.A.4
Caves, L.S.D.5
-
28
-
-
84872880689
-
-
Chemical ComputingGroup (2012) MolecularOperation Environment, MOE, Chemical Computing Group, Accessed 10 April 2011
-
Chemical ComputingGroup (2012) MolecularOperation Environment, MOE, Chemical Computing Group. http://www.chemcomp.com/. Accessed 10 April 2011
-
-
-
-
29
-
-
77950690810
-
Increasingly accurate dynamic molecular models of G-protein coupled receptor oligomers: Panacea or Pandora's box for novel drug discovery?
-
Filizola M (2010) Increasingly accurate dynamic molecular models of G-protein coupled receptor oligomers: Panacea or Pandora's box for novel drug discovery? Life Sci 86:590-597
-
(2010)
Life Sci
, vol.86
, pp. 590-597
-
-
Filizola, M.1
-
30
-
-
85027927015
-
Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists
-
Wu B, Chien EY, Mol CD, Fenalti G, Liu W, Katritch V, Abagyan R, Brooun A, Wells P, Bi FC, Hamel DJ, Kuhn P, Handel TM, Cherezov V, Stevens RC (2010) Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists. Science 330:1066-1071
-
(2010)
Science
, vol.330
, pp. 1066-1071
-
-
Wu, B.1
Chien, E.Y.2
Mol, C.D.3
Fenalti, G.4
Liu, W.5
Katritch, V.6
Abagyan, R.7
Brooun, A.8
Wells, P.9
Bi, F.C.10
Hamel, D.J.11
Kuhn, P.12
Handel, T.M.13
Cherezov, V.14
Stevens, R.C.15
-
31
-
-
0029666267
-
A peptide derived from a beta2-adrenergic receptor transmembrane domain inhibits both receptor dimerization and activation
-
Hebert TE, Moffett S, Morello JP, Loisel TP, Bichet DG, Barret C, Bouvier M (1996) A peptide derived from a beta2-adrenergic receptor transmembrane domain inhibits both receptor dimerization and activation. J Biol Chem 271:16384-16392
-
(1996)
J Biol Chem
, vol.271
, pp. 16384-16392
-
-
Hebert, T.E.1
Moffett, S.2
Morello, J.P.3
Loisel, T.P.4
Bichet, D.G.5
Barret, C.6
Bouvier, M.7
-
32
-
-
1942468189
-
The G protein-coupled receptor rhodopsin in the native membrane
-
Fotiadis D, Liang Y, Filipek S, Saperstein DA, Engel A, Palczewski K (2004) The G protein-coupled receptor rhodopsin in the native membrane. FEBS Lett 564:281-288
-
(2004)
FEBS Lett
, vol.564
, pp. 281-288
-
-
Fotiadis, D.1
Liang, Y.2
Filipek, S.3
Saperstein, D.A.4
Engel, A.5
Palczewski, K.6
-
33
-
-
0038159530
-
Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes
-
Liang Y, Fotiadis D, Filipek S, Saperstein DA, Palczewski K, Engel A (2003) Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes. J Biol Chem 278:21655-21662
-
(2003)
J Biol Chem
, vol.278
, pp. 21655-21662
-
-
Liang, Y.1
Fotiadis, D.2
Filipek, S.3
Saperstein, D.A.4
Palczewski, K.5
Engel, A.6
-
34
-
-
77957055780
-
Integrated methods for the construction of three-dimensional models and computational probing of structure-function relations in G protein coupled receptors
-
Ballesteros JA, Weinstein H (1995) Integrated methods for the construction of three-dimensional models and computational probing of structure-function relations in G protein coupled receptors. Meth Neurosci 25:366-428
-
(1995)
Meth Neurosci
, vol.25
, pp. 366-428
-
-
Ballesteros, J.A.1
Weinstein, H.2
-
35
-
-
67651174545
-
The function of G-protein coupled receptors and membrane cholesterol: Specific or general interaction?
-
Paila YD, Chattopadhyay A (2009) The function of G-protein coupled receptors and membrane cholesterol: Specific or general interaction? Glycoconj J 26:711-720
-
(2009)
Glycoconj J
, vol.26
, pp. 711-720
-
-
Paila, Y.D.1
Chattopadhyay, A.2
|