메뉴 건너뛰기




Volumn 18, Issue 9, 2012, Pages 4465-4475

Fractal dimension as a measure of surface roughness of G protein-coupled receptors: Implications for structure and function

Author keywords

Fractal geometry; G protein coupled receptors; Ligand binding; Membrane cholesterol; Surface roughness

Indexed keywords

ALPRENOLOL; BETA 2 ADRENERGIC RECEPTOR; CARAZOLOL; G PROTEIN COUPLED RECEPTOR; PROTEIN PATCHED; TIMOLOL;

EID: 84867576743     PISSN: 16102940     EISSN: 09485023     Source Type: Journal    
DOI: 10.1007/s00894-012-1431-2     Document Type: Article
Times cited : (20)

References (35)
  • 2
    • 79960937465 scopus 로고    scopus 로고
    • Fractal symmetry of protein interior: What have we learned?
    • Banerji A, Ghosh I (2011) Fractal symmetry of protein interior: What have we learned? Cell Mol Life Sci 68:2711-2737
    • (2011) Cell Mol Life Sci , vol.68 , pp. 2711-2737
    • Banerji, A.1    Ghosh, I.2
  • 3
    • 84872886994 scopus 로고    scopus 로고
    • The protein surface as a thermodynamic frontier: A fractal approach
    • Tadashi M (ed). In-Tech, ISBN 978-953-307-980-6, available from
    • PereyraM,Méndez E (2011) The protein surface as a thermodynamic frontier: A fractal approach. In: Tadashi M (ed) Application of thermodynamics to biological and materialsscience. In-Tech, ISBN 978-953-307-980-6, available from: Http://www.intechopen.com/ books/show/title/application-of-thermodynamics- to-biological-andmaterials-science
    • (2011) Application of Thermodynamics to Biological and Materialsscience
    • Pereyra, M.1    Méndez, E.2
  • 4
    • 0033613904 scopus 로고    scopus 로고
    • Protein surface roughness and small molecular binding sites
    • Pettit FK, Bowie JU (1999) Protein surface roughness and small molecular binding sites. J Mol Biol 285:1377-1382
    • (1999) J Mol Biol , vol.285 , pp. 1377-1382
    • Pettit, F.K.1    Bowie, J.U.2
  • 5
    • 0000751873 scopus 로고
    • Selfsimilarity of solvent-accessible surfaces of biological and synthetical macromolecules
    • Zachmann C-D, Kast SM, Sariban A, Brickmann J (1993) Selfsimilarity of solvent-accessible surfaces of biological and synthetical macromolecules. J Comput Chem 14:1290-1300
    • (1993) J Comput Chem , vol.14 , pp. 1290-1300
    • Zachmann, C.-D.1    Kast, S.M.2    Sariban, A.3    Brickmann, J.4
  • 6
    • 84866070802 scopus 로고    scopus 로고
    • A study of interface roughness of heteromeric obligate and non-obligate protein-protein complexes
    • Bera I, Ray S (2009) A study of interface roughness of heteromeric obligate and non-obligate protein-protein complexes. Bioinformation 4:210-215
    • (2009) Bioinformation , vol.4 , pp. 210-215
    • Bera, I.1    Ray, S.2
  • 7
    • 0022347081 scopus 로고
    • Fractal surfaces of proteins
    • Lewis M, Rees DC (1985) Fractal surfaces of proteins. Science 230:1163-1165
    • (1985) Science , vol.230 , pp. 1163-1165
    • Lewis, M.1    Rees, D.C.2
  • 8
    • 0033527349 scopus 로고    scopus 로고
    • Transmembrane and water-soluble helix bundles display reverse patterns of surface roughness
    • Renthal R (1999) Transmembrane and water-soluble helix bundles display reverse patterns of surface roughness. Biochem Biophys Res Commun 263:714-717
    • (1999) Biochem Biophys Res Commun , vol.263 , pp. 714-717
    • Renthal, R.1
  • 9
    • 70350536555 scopus 로고    scopus 로고
    • Coexistence of flexibility and stability of proteins: An equation of state
    • de Leeuw M, Reuveni S, Klafter J, Granek R (2009) Coexistence of flexibility and stability of proteins: An equation of state. PLoS ONE 4:e7296
    • (2009) PLoS ONE , vol.4
    • De Leeuw, M.1    Reuveni, S.2    Klafter, J.3    Granek, R.4
  • 10
    • 42149181885 scopus 로고    scopus 로고
    • Structural diversity of G protein-coupled receptors and significance for drug discovery
    • Lagerström MC, Schiöth HB (2008) Structural diversity of G protein-coupled receptors and significance for drug discovery. Nat Rev Drug Discov 7:339-3357
    • (2008) Nat Rev Drug Discov , vol.7 , pp. 339-3357
    • Lagerström, M.C.1    Schiöth, H.B.2
  • 12
    • 77951985712 scopus 로고    scopus 로고
    • Allosteric ligands for G protein-coupled receptors: A novel strategy with attractive therapeutic opportunities
    • De Amici M, Dallanoce C, Holzgrabe U, Tränkle C, Mohr K (2010) Allosteric ligands for G protein-coupled receptors: A novel strategy with attractive therapeutic opportunities. Med Res Rev 30:463-549
    • (2010) Med Res Rev , vol.30 , pp. 463-549
    • De Amici, M.1    Dallanoce, C.2    Holzgrabe, U.3    Tränkle, C.4    Mohr, K.5
  • 13
    • 78049523087 scopus 로고    scopus 로고
    • The family of G protein-coupled receptors: An example of membrane proteins
    • Tikhonova IG, Fourmy D (2010) The family of G protein-coupled receptors: An example of membrane proteins. Methods Mol Biol 654:441-454
    • (2010) Methods Mol Biol , vol.654 , pp. 441-454
    • Tikhonova, I.G.1    Fourmy, D.2
  • 14
    • 0037020329 scopus 로고    scopus 로고
    • Drug design strategies for targeting G protein-coupled receptors
    • Klabunde T, Hessler G (2002) Drug design strategies for targeting G protein-coupled receptors. Chem Bio Chem 3:928-944
    • (2002) Chem Bio Chem , vol.3 , pp. 928-944
    • Klabunde, T.1    Hessler, G.2
  • 17
    • 77955779227 scopus 로고    scopus 로고
    • Conserved binding mode of human beta2 adrenergic receptor inverse agonists and antagonist revealed by X-ray crystallography
    • Wacker D, Fenalti G, Brown MA, Katritch V, Abagyan R, Cherezov V, Stevens RC (2010) Conserved binding mode of human beta2 adrenergic receptor inverse agonists and antagonist revealed by X-ray crystallography. J Am Chem Soc 132:11443-11445
    • (2010) J Am Chem Soc , vol.132 , pp. 11443-11445
    • Wacker, D.1    Fenalti, G.2    Brown, M.A.3    Katritch, V.4    Abagyan, R.5    Cherezov, V.6    Stevens, R.C.7
  • 21
  • 22
    • 10344223464 scopus 로고    scopus 로고
    • Making optimal use of empirical energy functions: Force-field parameterization in crystal space
    • Krieger E, Darden T, Nabuurs SB, Finkelstein A, Vriend G (2004) Making optimal use of empirical energy functions: Force-field parameterization in crystal space. Proteins 57:678-683
    • (2004) Proteins , vol.57 , pp. 678-683
    • Krieger, E.1    Darden, T.2    Nabuurs, S.B.3    Finkelstein, A.4    Vriend, G.5
  • 23
    • 0036191007 scopus 로고    scopus 로고
    • Models@Home: Distributed computing in bioinformatics using a screensaver based approach
    • Krieger E, Vriend G (2002) Models@Home: Distributed computing in bioinformatics using a screensaver based approach. Bioinformatics 18:315-318
    • (2002) Bioinformatics , vol.18 , pp. 315-318
    • Krieger, E.1    Vriend, G.2
  • 24
    • 0030040323 scopus 로고    scopus 로고
    • Reduced surface: An efficient way to compute molecular surfaces
    • Sanner MF, Olson AJ, Spehner JC (1996) Reduced surface: An efficient way to compute molecular surfaces. Biopolymers 38:305-320
    • (1996) Biopolymers , vol.38 , pp. 305-320
    • Sanner, M.F.1    Olson, A.J.2    Spehner, J.C.3
  • 25
    • 84863304598 scopus 로고    scopus 로고
    • R: A language and environment for statistical computing
    • R Development Core Team, Vienna
    • R Development Core Team (2010) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna
    • (2010) R Foundation for Statistical Computing
  • 27
    • 0029878720 scopus 로고    scopus 로고
    • VMD: Visual molecular dynamics
    • HumphreyW, Dalke A, Schulten K (1996) VMD: Visual molecular dynamics. J Mol Graph 14(33-88):27-28
    • (1996) J Mol Graph , vol.14 , Issue.33-88 , pp. 27-28
    • Humphrey, W.1    Dalke, A.2    Schulten, K.3
  • 28
    • 84872880689 scopus 로고    scopus 로고
    • Chemical ComputingGroup (2012) MolecularOperation Environment, MOE, Chemical Computing Group, Accessed 10 April 2011
    • Chemical ComputingGroup (2012) MolecularOperation Environment, MOE, Chemical Computing Group. http://www.chemcomp.com/. Accessed 10 April 2011
  • 29
    • 77950690810 scopus 로고    scopus 로고
    • Increasingly accurate dynamic molecular models of G-protein coupled receptor oligomers: Panacea or Pandora's box for novel drug discovery?
    • Filizola M (2010) Increasingly accurate dynamic molecular models of G-protein coupled receptor oligomers: Panacea or Pandora's box for novel drug discovery? Life Sci 86:590-597
    • (2010) Life Sci , vol.86 , pp. 590-597
    • Filizola, M.1
  • 31
    • 0029666267 scopus 로고    scopus 로고
    • A peptide derived from a beta2-adrenergic receptor transmembrane domain inhibits both receptor dimerization and activation
    • Hebert TE, Moffett S, Morello JP, Loisel TP, Bichet DG, Barret C, Bouvier M (1996) A peptide derived from a beta2-adrenergic receptor transmembrane domain inhibits both receptor dimerization and activation. J Biol Chem 271:16384-16392
    • (1996) J Biol Chem , vol.271 , pp. 16384-16392
    • Hebert, T.E.1    Moffett, S.2    Morello, J.P.3    Loisel, T.P.4    Bichet, D.G.5    Barret, C.6    Bouvier, M.7
  • 33
    • 0038159530 scopus 로고    scopus 로고
    • Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes
    • Liang Y, Fotiadis D, Filipek S, Saperstein DA, Palczewski K, Engel A (2003) Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes. J Biol Chem 278:21655-21662
    • (2003) J Biol Chem , vol.278 , pp. 21655-21662
    • Liang, Y.1    Fotiadis, D.2    Filipek, S.3    Saperstein, D.A.4    Palczewski, K.5    Engel, A.6
  • 34
    • 77957055780 scopus 로고
    • Integrated methods for the construction of three-dimensional models and computational probing of structure-function relations in G protein coupled receptors
    • Ballesteros JA, Weinstein H (1995) Integrated methods for the construction of three-dimensional models and computational probing of structure-function relations in G protein coupled receptors. Meth Neurosci 25:366-428
    • (1995) Meth Neurosci , vol.25 , pp. 366-428
    • Ballesteros, J.A.1    Weinstein, H.2
  • 35
    • 67651174545 scopus 로고    scopus 로고
    • The function of G-protein coupled receptors and membrane cholesterol: Specific or general interaction?
    • Paila YD, Chattopadhyay A (2009) The function of G-protein coupled receptors and membrane cholesterol: Specific or general interaction? Glycoconj J 26:711-720
    • (2009) Glycoconj J , vol.26 , pp. 711-720
    • Paila, Y.D.1    Chattopadhyay, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.