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Volumn 236, Issue 4, 2012, Pages 1093-1105

Multiple tandem duplication of the phenylalanine ammonia-lyase genes in Cucumis sativus L

Author keywords

Cucumber (Cucumis sativus); Expression profile; Gene family; Phenylalanine ammonia lyase (PAL); Tandem duplication

Indexed keywords

CUCUMIS SATIVUS;

EID: 84866950529     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-012-1659-1     Document Type: Article
Times cited : (76)

References (54)
  • 1
    • 0034925512 scopus 로고    scopus 로고
    • Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein
    • Abe M, Takahashi T, Komeda Y (2001) Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein. Plant J 26: 487-494.
    • (2001) Plant J , vol.26 , pp. 487-494
    • Abe, M.1    Takahashi, T.2    Komeda, Y.3
  • 2
    • 0037327487 scopus 로고    scopus 로고
    • Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis
    • Abe M, Katsumata H, Komeda Y, Takahashi T (2003) Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis. Development 130: 635-643.
    • (2003) Development , vol.130 , pp. 635-643
    • Abe, M.1    Katsumata, H.2    Komeda, Y.3    Takahashi, T.4
  • 3
    • 0033867676 scopus 로고    scopus 로고
    • Analysis of intrachromosomal repeats in yeast Saccharomyces cerevisiae: a possible model for their origin
    • Achaz G, Coissac E, Viari A, Netter P (2000) Analysis of intrachromosomal repeats in yeast Saccharomyces cerevisiae: a possible model for their origin. Mol Biol Evol 17: 1268-1275.
    • (2000) Mol Biol Evol , vol.17 , pp. 1268-1275
    • Achaz, G.1    Coissac, E.2    Viari, A.3    Netter, P.4
  • 4
    • 0032811334 scopus 로고    scopus 로고
    • Phosphorylation of phenylalanine ammonia-lyase: evidence for a novel protein kinase and identification of the phosphorylated residue
    • Allwood EG, Davies DR, Gerrish C, Ellis BE, Bolwell GP (1999) Phosphorylation of phenylalanine ammonia-lyase: evidence for a novel protein kinase and identification of the phosphorylated residue. FEBS Lett 457: 47-52.
    • (1999) FEBS Lett , vol.457 , pp. 47-52
    • Allwood, E.G.1    Davies, D.R.2    Gerrish, C.3    Ellis, B.E.4    Bolwell, G.P.5
  • 5
    • 32144432437 scopus 로고    scopus 로고
    • The SWISS-MODEL workspace: a web-based environment for protein structure homology modeling
    • Arnold K, Bordoli L, Kopp J, Schwede T (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modeling. Bioinformatics 22: 195-201.
    • (2006) Bioinformatics , vol.22 , pp. 195-201
    • Arnold, K.1    Bordoli, L.2    Kopp, J.3    Schwede, T.4
  • 6
    • 33947520277 scopus 로고    scopus 로고
    • Tomato genome sequencing: deciphering the euchromatin region of the chromosome 8
    • Asamizu E (2007) Tomato genome sequencing: deciphering the euchromatin region of the chromosome 8. Plant Biotechnol 24: 5-9.
    • (2007) Plant Biotechnol , vol.24 , pp. 5-9
    • Asamizu, E.1
  • 7
    • 34247262031 scopus 로고    scopus 로고
    • Conifer R2R3-MYB transcription factors: sequence analyses and gene expression in wood-forming tissues of white spruce (Picea glauca)
    • Bedon F, Grima-Pettenati J, Mackay J (2007) Conifer R2R3-MYB transcription factors: sequence analyses and gene expression in wood-forming tissues of white spruce (Picea glauca). BMC Plant Biol 7: 17.
    • (2007) BMC Plant Biol , vol.7 , pp. 17
    • Bedon, F.1    Grima-Pettenati, J.2    Mackay, J.3
  • 8
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein dye binding
    • Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein dye binding. Anal Biochem 72: 248-254.
    • (1976) Anal Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 9
    • 2942620598 scopus 로고    scopus 로고
    • The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
    • Cannon SB, Mitra A, Baumgarten A, Young ND, May G (2004) The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol 4: 10.
    • (2004) BMC Plant Biol , vol.4 , pp. 10
    • Cannon, S.B.1    Mitra, A.2    Baumgarten, A.3    Young, N.D.4    May, G.5
  • 10
    • 57749088682 scopus 로고    scopus 로고
    • Tomato phenylalanine ammonia-lyase gene family, highly redundant but strongly underutilized
    • Chang A, Lim MH, Lee SW, Robb EJ, Nazar RN (2008) Tomato phenylalanine ammonia-lyase gene family, highly redundant but strongly underutilized. J Biol Chem 283: 33591-33601.
    • (2008) J Biol Chem , vol.283 , pp. 33591-33601
    • Chang, A.1    Lim, M.H.2    Lee, S.W.3    Robb, E.J.4    Nazar, R.N.5
  • 12
    • 0027490089 scopus 로고
    • Purification and characterization of a soluble salicylic acid-binding protein from tobacco
    • Chen Z, Ricigliano JW, Klessig DF (1993) Purification and characterization of a soluble salicylic acid-binding protein from tobacco. Proc Natl Acad Sci USA 90: 9533-9537.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 9533-9537
    • Chen, Z.1    Ricigliano, J.W.2    Klessig, D.F.3
  • 14
    • 0042574199 scopus 로고    scopus 로고
    • Pre-treatment of cucumber plants with acibenzolar-S-methyl systemically primes a phenylalanine ammonia lyase gene (PAL1) for enhanced expression upon attack with a pathogenic fungus
    • Cools HJ, Ishii H (2002) Pre-treatment of cucumber plants with acibenzolar-S-methyl systemically primes a phenylalanine ammonia lyase gene (PAL1) for enhanced expression upon attack with a pathogenic fungus. Physiol Mol Plant Pathol 61: 273-280.
    • (2002) Physiol Mol Plant Pathol , vol.61 , pp. 273-280
    • Cools, H.J.1    Ishii, H.2
  • 16
    • 79960429913 scopus 로고    scopus 로고
    • Salicylic acid regulates carbohydrate metabolism that confers tolerance to salinity stress in cucumber seedlings
    • Dong CJ, Wang XL, Shang QM (2011) Salicylic acid regulates carbohydrate metabolism that confers tolerance to salinity stress in cucumber seedlings. Sci Hortic 129: 629-636.
    • (2011) Sci Hortic , vol.129 , pp. 629-636
    • Dong, C.J.1    Wang, X.L.2    Shang, Q.M.3
  • 17
    • 0002620564 scopus 로고
    • Isoflavonoid phytoalexins and their biosynthetic enzymes
    • S. J. Gurr, M. J. McPherson, and D. J. Bowles (Eds.), Ohio: Oxford
    • Edwards R, Kessmann H (1992) Isoflavonoid phytoalexins and their biosynthetic enzymes. In: Gurr SJ, McPherson MJ, Bowles DJ (eds) Molecular plant pathology: a practical approach. Oxford, Ohio, pp 45-62.
    • (1992) Molecular Plant Pathology: A Practical Approach , pp. 45-62
    • Edwards, R.1    Kessmann, H.2
  • 18
    • 0025204325 scopus 로고
    • Abnormal plant development and down-regulation of phenylpropanoid biosynthesis in transgenic tobacco containing a heterologous phenylalanine ammonia-lyase gene
    • Elkind Y, Edwards R, Mavandad M, Hedrick SA, Ribak O, Dixon RA, Lamb CJ (1990) Abnormal plant development and down-regulation of phenylpropanoid biosynthesis in transgenic tobacco containing a heterologous phenylalanine ammonia-lyase gene. Proc Natl Acad Sci USA 87: 9057-9061.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 9057-9061
    • Elkind, Y.1    Edwards, R.2    Mavandad, M.3    Hedrick, S.A.4    Ribak, O.5    Dixon, R.A.6    Lamb, C.J.7
  • 19
    • 0035487212 scopus 로고    scopus 로고
    • Segmental duplications: an 'expanding' role in genomic instability and disease
    • Emanuel BS, Shaikh TH (2001) Segmental duplications: an 'expanding' role in genomic instability and disease. Nat Rev Genet 2: 791-800.
    • (2001) Nat Rev Genet , vol.2 , pp. 791-800
    • Emanuel, B.S.1    Shaikh, T.H.2
  • 20
    • 84866934692 scopus 로고    scopus 로고
    • The phenylpropanoid pathway in Arabidopsis
    • Fraser CM, Chapple C (2011) The phenylpropanoid pathway in Arabidopsis. Arabidopsis Book 9: e0152.
    • (2011) Arabidopsis Book , vol.9
    • Fraser, C.M.1    Chapple, C.2
  • 21
    • 0030087824 scopus 로고    scopus 로고
    • Phenylalanine ammonia-lyase gene structure, expression, and evolution in Nicotiana
    • Fukasawa-Akada T, Kung SD, Watson JC (1996) Phenylalanine ammonia-lyase gene structure, expression, and evolution in Nicotiana. Plant Mol Biol 30: 711-722.
    • (1996) Plant Mol Biol , vol.30 , pp. 711-722
    • Fukasawa-Akada, T.1    Kung, S.D.2    Watson, J.C.3
  • 22
    • 0027582480 scopus 로고
    • Salicylic acid-inducible binding of a tobacco nuclear protein to a 10 bp sequence which is highly conserved amongst stress-inducible genes
    • Goldsborough AP, Albrecht H, Stratford R (1993) Salicylic acid-inducible binding of a tobacco nuclear protein to a 10 bp sequence which is highly conserved amongst stress-inducible genes. Plant J 3: 563-571.
    • (1993) Plant J , vol.3 , pp. 563-571
    • Goldsborough, A.P.1    Albrecht, H.2    Stratford, R.3
  • 23
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling
    • Guex N, Peitsch MC (1997) SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18: 2714-2723.
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 24
    • 67651122981 scopus 로고    scopus 로고
    • Characterization of the phenylalanine ammonia-lyase gene (SlPAL5) from tomato (Solanum lycopersicum L.)
    • Guo J, Wang MH (2009) Characterization of the phenylalanine ammonia-lyase gene (SlPAL5) from tomato (Solanum lycopersicum L.). Mol Biol Rep 36: 1579-1585.
    • (2009) Mol Biol Rep , vol.36 , pp. 1579-1585
    • Guo, J.1    Wang, M.H.2
  • 25
    • 0022665178 scopus 로고
    • Upstream sequences required for efficient expression of a soybean heat shock gene
    • Gurley WB, Czarnecka E, Key JL, Nagao RT (1986) Upstream sequences required for efficient expression of a soybean heat shock gene. Mol Cell Biol 6: 559-565.
    • (1986) Mol Cell Biol , vol.6 , pp. 559-565
    • Gurley, W.B.1    Czarnecka, E.2    Key, J.L.3    Nagao, R.T.4
  • 26
    • 0028814339 scopus 로고
    • Genetics and biochemistry of anthocyanin biosynthesis
    • Holton TA, Cornish EC (1995) Genetics and biochemistry of anthocyanin biosynthesis. Plant Cell 7: 1071-1083.
    • (1995) Plant Cell , vol.7 , pp. 1071-1083
    • Holton, T.A.1    Cornish, E.C.2
  • 27
    • 77955666376 scopus 로고    scopus 로고
    • Functional analysis of the Arabidopsis PAL gene family in plant growth, development, and response to environmental stress
    • Huang J, Gu M, Lai Z, Fan B, Shi K, Zhou YH, Yu JQ, Chen Z (2010) Functional analysis of the Arabidopsis PAL gene family in plant growth, development, and response to environmental stress. Plant Physiol 153: 1526-1538.
    • (2010) Plant Physiol , vol.153 , pp. 1526-1538
    • Huang, J.1    Gu, M.2    Lai, Z.3    Fan, B.4    Shi, K.5    Zhou, Y.H.6    Yu, J.Q.7    Chen, Z.8
  • 29
    • 0037303852 scopus 로고    scopus 로고
    • ABA effects on ethylene production, PAL activity, anthocyanin and phenolic contents of strawberry fruit
    • Jiang YM, Joyce DC (2003) ABA effects on ethylene production, PAL activity, anthocyanin and phenolic contents of strawberry fruit. Plant Growth Regul 39: 171-174.
    • (2003) Plant Growth Regul , vol.39 , pp. 171-174
    • Jiang, Y.M.1    Joyce, D.C.2
  • 30
    • 0026543902 scopus 로고
    • Phenylalanine ammonia-lyase in potato (Solanum tuberosum L.)
    • Joos HJ, Hahlbrock K (1992) Phenylalanine ammonia-lyase in potato (Solanum tuberosum L.). Eur J Biochem 204: 621-629.
    • (1992) Eur J Biochem , vol.204 , pp. 621-629
    • Joos, H.J.1    Hahlbrock, K.2
  • 31
    • 0034805320 scopus 로고    scopus 로고
    • The Phenylalanine ammonia-lyase gene family in raspberry: structure, expression, and evolution
    • Kumar A, Ellis BE (2001) The Phenylalanine ammonia-lyase gene family in raspberry: structure, expression, and evolution. Plant Physiol 127: 230-239.
    • (2001) Plant Physiol , vol.127 , pp. 230-239
    • Kumar, A.1    Ellis, B.E.2
  • 32
    • 0033832317 scopus 로고    scopus 로고
    • Characterization of cis-elements required for vascular expression of the Cinnamoyl CoA Reductase gene and for protein-DNA complex formation
    • Lacombe E, van Doorsselaere J, Boerjan W, Boudet AM, Grima-Pettenati J (2000) Characterization of cis-elements required for vascular expression of the Cinnamoyl CoA Reductase gene and for protein-DNA complex formation. Plant J 23: 663-676.
    • (2000) Plant J , vol.23 , pp. 663-676
    • Lacombe, E.1    van Doorsselaere, J.2    Boerjan, W.3    Boudet, A.M.4    Grima-Pettenati, J.5
  • 33
    • 0024978438 scopus 로고
    • Differential regulation of phenylalanine ammonia-lyase genes during plant development and by environmental cues
    • Liang X, Dron M, Cramer CL, Dixon RA, Lamb CJ (1989) Differential regulation of phenylalanine ammonia-lyase genes during plant development and by environmental cues. J Biol Chem 264: 14486-14492.
    • (1989) J Biol Chem , vol.264 , pp. 14486-14492
    • Liang, X.1    Dron, M.2    Cramer, C.L.3    Dixon, R.A.4    Lamb, C.J.5
  • 35
    • 0031105483 scopus 로고    scopus 로고
    • Isolation of a cDNA and a genomic clone encoding cinnamate 4-hydroxylase from Arabidopsis and its expression manner in planta
    • Mizutani M, Ohta D, Sato R (1997) Isolation of a cDNA and a genomic clone encoding cinnamate 4-hydroxylase from Arabidopsis and its expression manner in planta. Plant Physiol 113: 755-763.
    • (1997) Plant Physiol , vol.113 , pp. 755-763
    • Mizutani, M.1    Ohta, D.2    Sato, R.3
  • 36
    • 32044464356 scopus 로고    scopus 로고
    • Transcriptional regulation of ABI3- and ABA-responsive genes including RD29B and RD29A in seeds, germinating embryos, and seedlings of Arabidopsis
    • Nakashima K, Fujita Y, Katsura K, Maruyama K, Narusaka Y, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2006) Transcriptional regulation of ABI3- and ABA-responsive genes including RD29B and RD29A in seeds, germinating embryos, and seedlings of Arabidopsis. Plant Mol Biol 60: 51-68.
    • (2006) Plant Mol Biol , vol.60 , pp. 51-68
    • Nakashima, K.1    Fujita, Y.2    Katsura, K.3    Maruyama, K.4    Narusaka, Y.5    Seki, M.6    Shinozaki, K.7    Yamaguchi-Shinozaki, K.8
  • 37
    • 50449102086 scopus 로고    scopus 로고
    • Differential expression of four Arabidopsis PAL genes; PAL1 and PAL2 have functional specialization in abiotic environmental-triggered flavonoid synthesis
    • Olsen KM, Lea US, Slimestad R, Verheul M, Lillo C (2008) Differential expression of four Arabidopsis PAL genes; PAL1 and PAL2 have functional specialization in abiotic environmental-triggered flavonoid synthesis. J Plant Physiol 165: 1491-1499.
    • (2008) J Plant Physiol , vol.165 , pp. 1491-1499
    • Olsen, K.M.1    Lea, U.S.2    Slimestad, R.3    Verheul, M.4    Lillo, C.5
  • 39
  • 41
    • 1942498070 scopus 로고    scopus 로고
    • Selection for gene clustering by tandem duplication
    • Reams AB, Neidle EL (2004) Selection for gene clustering by tandem duplication. Annu Rev Microbiol 58: 119-142.
    • (2004) Annu Rev Microbiol , vol.58 , pp. 119-142
    • Reams, A.B.1    Neidle, E.L.2
  • 42
    • 70450205295 scopus 로고    scopus 로고
    • Phenylalanine ammonia-lyase (PAL) from tobacco (Nicotiana tabacum): characterization of the four tobacco PAL genes and active heterotetrameric enzymes
    • Reichert AI, He XZ, Dixon RA (2009) Phenylalanine ammonia-lyase (PAL) from tobacco (Nicotiana tabacum): characterization of the four tobacco PAL genes and active heterotetrameric enzymes. Biochem J 424: 233-242.
    • (2009) Biochem J , vol.424 , pp. 233-242
    • Reichert, A.I.1    He, X.Z.2    Dixon, R.A.3
  • 43
    • 18044364010 scopus 로고    scopus 로고
    • Structural basis for the entrance into the phenylpropanoid metabolism catalyzed by phenylalanine ammonia-lyase
    • Ritter H, Schulz GE (2004) Structural basis for the entrance into the phenylpropanoid metabolism catalyzed by phenylalanine ammonia-lyase. Plant Cell 16: 3426-3436.
    • (2004) Plant Cell , vol.16 , pp. 3426-3436
    • Ritter, H.1    Schulz, G.E.2
  • 45
    • 0035999364 scopus 로고    scopus 로고
    • Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound-induced signaling
    • Rushton PJ, Reinstädler A, Lipka V, Lippok B, Somssich IE (2002) Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound-induced signaling. Plant Cell 14: 749-762.
    • (2002) Plant Cell , vol.14 , pp. 749-762
    • Rushton, P.J.1    Reinstädler, A.2    Lipka, V.3    Lippok, B.4    Somssich, I.E.5
  • 46
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 48
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analyses tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analyses tools. Nucleic Acids Res 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 49
    • 4444340698 scopus 로고    scopus 로고
    • WRKY transcription factors: from DNA binding towards biological function
    • Ulker B, Somssich IE (2004) WRKY transcription factors: from DNA binding towards biological function. Curr Opin Plant Biol 7: 491-498.
    • (2004) Curr Opin Plant Biol , vol.7 , pp. 491-498
    • Ulker, B.1    Somssich, I.E.2
  • 50
    • 69949097909 scopus 로고    scopus 로고
    • Salicylic acid, a multifaceted hormone to combat disease
    • Vlot AC, Dempsey DA, Klessig DF (2009) Salicylic acid, a multifaceted hormone to combat disease. Annu Rev Phytopathol 47: 177-206.
    • (2009) Annu Rev Phytopathol , vol.47 , pp. 177-206
    • Vlot, A.C.1    Dempsey, D.A.2    Klessig, D.F.3
  • 51
    • 0032082930 scopus 로고    scopus 로고
    • Phenylpropanoid biosynthesis and its regulation
    • Weisshaar B, Jenkins GI (1998) Phenylpropanoid biosynthesis and its regulation. Curr Opin Plant Biol 1: 251-257.
    • (1998) Curr Opin Plant Biol , vol.1 , pp. 251-257
    • Weisshaar, B.1    Jenkins, G.I.2
  • 52
    • 0028874074 scopus 로고
    • Lignin biosynthesis
    • Whetten R, Sederoff R (1995) Lignin biosynthesis. Plant Cell 7: 1001-1013.
    • (1995) Plant Cell , vol.7 , pp. 1001-1013
    • Whetten, R.1    Sederoff, R.2
  • 53
    • 0036675284 scopus 로고    scopus 로고
    • Characterisation of the DNA-binding profile of barley HvCBF1 using an enzymatic method for rapid, quantitative and high-throughput analysis of the DNA-binding activity
    • Xue GP (2002) Characterisation of the DNA-binding profile of barley HvCBF1 using an enzymatic method for rapid, quantitative and high-throughput analysis of the DNA-binding activity. Nucleic Acids Res 30: e77.
    • (2002) Nucleic Acids Res , vol.30
    • Xue, G.P.1
  • 54
    • 33745944196 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses
    • Yamaguchi-Shinozaki K, Shinozaki K (2006) Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu Rev Plant Biol 57: 781-803.
    • (2006) Annu Rev Plant Biol , vol.57 , pp. 781-803
    • Yamaguchi-Shinozaki, K.1    Shinozaki, K.2


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