-
1
-
-
0034192491
-
The WRKY superfamily of plant transcription factors
-
10.1016/S1360-1385(00)01600-9, 10785665
-
Eulgem T, Rushton PJ, Robatzek S, Somssich IE. The WRKY superfamily of plant transcription factors. Trends Plant Sci 2000, 5:199-206. 10.1016/S1360-1385(00)01600-9, 10785665.
-
(2000)
Trends Plant Sci
, vol.5
, pp. 199-206
-
-
Eulgem, T.1
Rushton, P.J.2
Robatzek, S.3
Somssich, I.E.4
-
2
-
-
0029411053
-
Members of a new family of DNA-binding proteins bind to a conserved cis-element in the promoters of a-Amy2 genes
-
10.1007/BF00041160, 8541496
-
Rushton PJ, Macdonald H, Huttly AK, Lazarus CM, Hooley R. Members of a new family of DNA-binding proteins bind to a conserved cis-element in the promoters of a-Amy2 genes. Plant Mol Biol 1995, 29:691-702. 10.1007/BF00041160, 8541496.
-
(1995)
Plant Mol Biol
, vol.29
, pp. 691-702
-
-
Rushton, P.J.1
Macdonald, H.2
Huttly, A.K.3
Lazarus, C.M.4
Hooley, R.5
-
3
-
-
0141564571
-
A novel WRKY transcription factor, SUSIBA2, participates in sugar signaling in barley by binding to the sugarresponsive elements of the iso1 promoter
-
10.1105/tpc.014597, 181332, 12953112
-
Sun C, Palmqvist S, Olsson H, Boren M, Ahlandsberg S, Jansson C. A novel WRKY transcription factor, SUSIBA2, participates in sugar signaling in barley by binding to the sugarresponsive elements of the iso1 promoter. Plant Cell 2003, 15:2076-2092. 10.1105/tpc.014597, 181332, 12953112.
-
(2003)
Plant Cell
, vol.15
, pp. 2076-2092
-
-
Sun, C.1
Palmqvist, S.2
Olsson, H.3
Boren, M.4
Ahlandsberg, S.5
Jansson, C.6
-
4
-
-
20444383033
-
Solution Structure of an Arabidopsis WRKY DNA Binding Domain
-
10.1105/tpc.104.026435, 1069710, 15705956
-
Kazuhiko Y, Takanori K, Makoto I, Masaru T, Tomoko Y, Takashi Y, Masaaki A, Eiko S, Takayoshi M, Yasuko T, Nobuhiro H, Takaho T, Mikako S, Akiko T, Motoaki S, Kazuo S, Shigeyuki Y. Solution Structure of an Arabidopsis WRKY DNA Binding Domain. Plant Cell 2005, 17:944-956. 10.1105/tpc.104.026435, 1069710, 15705956.
-
(2005)
Plant Cell
, vol.17
, pp. 944-956
-
-
Kazuhiko, Y.1
Takanori, K.2
Makoto, I.3
Masaru, T.4
Tomoko, Y.5
Takashi, Y.6
Masaaki, A.7
Eiko, S.8
Takayoshi, M.9
Yasuko, T.10
Nobuhiro, H.11
Takaho, T.12
Mikako, S.13
Akiko, T.14
Motoaki, S.15
Kazuo, S.16
Shigeyuki, Y.17
-
5
-
-
0028171190
-
Characterization of a cDNA encoding a novel DNA-binding protein, SPF1, that recognizes SP8 sequences in the 59 upstream regions of genes coding for sporamin and b-amylase from sweet potato
-
Ishiguro S, Nakamura K. Characterization of a cDNA encoding a novel DNA-binding protein, SPF1, that recognizes SP8 sequences in the 59 upstream regions of genes coding for sporamin and b-amylase from sweet potato. Mol Gen Genet 1994, 244:563-571.
-
(1994)
Mol Gen Genet
, vol.244
, pp. 563-571
-
-
Ishiguro, S.1
Nakamura, K.2
-
6
-
-
0029853904
-
Interaction of elicitor-induced DNA-binding proteins with elicitor response elements in the promoters of parsley PR1 genes
-
452313, 8896462
-
Rushton PJ, Torres JT, Parniske M, Wernert P, Hahlbrock K, Somssich IE. Interaction of elicitor-induced DNA-binding proteins with elicitor response elements in the promoters of parsley PR1 genes. EMBO J 1996, 15:5690-5700. 452313, 8896462.
-
(1996)
EMBO J
, vol.15
, pp. 5690-5700
-
-
Rushton, P.J.1
Torres, J.T.2
Parniske, M.3
Wernert, P.4
Hahlbrock, K.5
Somssich, I.E.6
-
7
-
-
0031050726
-
A cDNA encoding a putative SPF1-type DNA-binding protein from cucumber
-
10.1016/S0378-1119(96)00665-8, 9055825
-
Kim DJ, Smith SM, Leaver CJ. A cDNA encoding a putative SPF1-type DNA-binding protein from cucumber. Gene 1997, 185:265-269. 10.1016/S0378-1119(96)00665-8, 9055825.
-
(1997)
Gene
, vol.185
, pp. 265-269
-
-
Kim, D.J.1
Smith, S.M.2
Leaver, C.J.3
-
8
-
-
0033804828
-
A potato gene encoding a WRKY-like transcription factor is induced in interactions with Erwinia carotovora subsp atroseptica and Phytophthora infestans and is coregulated with class I endochitinase expression
-
10.1094/MPMI.2000.13.10.1092, 11043470
-
Dellagi A, Heilbronn J, Avrova A, Montesano M, Palva ET, Stewart HE, Toth IK, Cooke D, Lyon G, Birch P. A potato gene encoding a WRKY-like transcription factor is induced in interactions with Erwinia carotovora subsp atroseptica and Phytophthora infestans and is coregulated with class I endochitinase expression. Mol Plant-Microbe Interact 2000, 13:1092-1101. 10.1094/MPMI.2000.13.10.1092, 11043470.
-
(2000)
Mol Plant-Microbe Interact
, vol.13
, pp. 1092-1101
-
-
Dellagi, A.1
Heilbronn, J.2
Avrova, A.3
Montesano, M.4
Palva, E.T.5
Stewart, H.E.6
Toth, I.K.7
Cooke, D.8
Lyon, G.9
Birch, P.10
-
9
-
-
0036009053
-
Cloning and characterization of a thermal hysteresis (antifreeze) protein with DNA-binding activity from winter bittersweet nightshade, Solanum dulcamara
-
10.1023/A:1014062714786, 11905961
-
Huang T, Duman JG. Cloning and characterization of a thermal hysteresis (antifreeze) protein with DNA-binding activity from winter bittersweet nightshade, Solanum dulcamara. Plant Mol Biol 2002, 48:339-350. 10.1023/A:1014062714786, 11905961.
-
(2002)
Plant Mol Biol
, vol.48
, pp. 339-350
-
-
Huang, T.1
Duman, J.G.2
-
10
-
-
0036678062
-
Molecular and biochemical mechanisms associated with dormancy and drought tolerance in the desert legume Retama raetam
-
10.1046/j.1365-313X.2002.01364.x, 12164811
-
Pnueli L, Hallak HE, Rozenberg M, Cohen M, Goloubinoff P, Kaplan A, Mittler R. Molecular and biochemical mechanisms associated with dormancy and drought tolerance in the desert legume Retama raetam. Plant J 2002, 31:319-330. 10.1046/j.1365-313X.2002.01364.x, 12164811.
-
(2002)
Plant J
, vol.31
, pp. 319-330
-
-
Pnueli, L.1
Hallak, H.E.2
Rozenberg, M.3
Cohen, M.4
Goloubinoff, P.5
Kaplan, A.6
Mittler, R.7
-
11
-
-
4444340698
-
WRKY transcription factors: from DNA binding towards biological function
-
10.1016/j.pbi.2004.07.012, 15337090
-
Ulker B, Somssich IE. WRKY transcription factors: from DNA binding towards biological function. Curr Opin Plant Biol 2004, 7:491-498. 10.1016/j.pbi.2004.07.012, 15337090.
-
(2004)
Curr Opin Plant Biol
, vol.7
, pp. 491-498
-
-
Ulker, B.1
Somssich, I.E.2
-
12
-
-
34548675661
-
Transcriptional profiling of chickpea genes differentially regulated in response to highsalinity, cold and drought
-
10.1186/1471-2164-8-303, 2025592, 17764573
-
Mantri NL, Ford R, Coram TE, Pang EC. Transcriptional profiling of chickpea genes differentially regulated in response to highsalinity, cold and drought. BMC Genomics 2007, 8:303. 10.1186/1471-2164-8-303, 2025592, 17764573.
-
(2007)
BMC Genomics
, vol.8
, pp. 303
-
-
Mantri, N.L.1
Ford, R.2
Coram, T.E.3
Pang, E.C.4
-
13
-
-
33846597097
-
Identification of a WRKY protein as a transcriptional regulator of benzylisoquinoline alkaloid biosynthesis in Coptis japonica
-
Kato N, Dubouzet E, Kokabu Y, Yoshida S, Taniguchi Y, Dubouzet JG, Yazaki K, Sato F. Identification of a WRKY protein as a transcriptional regulator of benzylisoquinoline alkaloid biosynthesis in Coptis japonica. Plant Cell Physiol 2007, 48:8-18.
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 8-18
-
-
Kato, N.1
Dubouzet, E.2
Kokabu, Y.3
Yoshida, S.4
Taniguchi, Y.5
Dubouzet, J.G.6
Yazaki, K.7
Sato, F.8
-
14
-
-
34547657394
-
Isolation and characterization of a Vitis vinifera transcription factor, VvWRKY1, and its effect on responses to fungal pathogens in transgenic tobacco plants
-
10.1093/jxb/erm062, 17456504
-
Marchive C, Mzid R, Deluc L, Barrieu F, Pirrello J, Gauthier A, Corio-Costet A, Regad F, Cailleteau B, Hamdi S, Lauvergeat V. Isolation and characterization of a Vitis vinifera transcription factor, VvWRKY1, and its effect on responses to fungal pathogens in transgenic tobacco plants. J Exp Bot 2007, 58:1999-2010. 10.1093/jxb/erm062, 17456504.
-
(2007)
J Exp Bot
, vol.58
, pp. 1999-2010
-
-
Marchive, C.1
Mzid, R.2
Deluc, L.3
Barrieu, F.4
Pirrello, J.5
Gauthier, A.6
Corio-Costet, A.7
Regad, F.8
Cailleteau, B.9
Hamdi, S.10
Lauvergeat, V.11
-
15
-
-
43449095701
-
Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stress in transgenic Arabidopsis plants
-
10.1111/j.1467-7652.2008.00336.x, 18384508
-
Zhou QY, Tian AG, Zou HF, Xie ZM, Lei G, Huang J, Wang CM, Wang HW, Zhang JS, Chen SY. Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stress in transgenic Arabidopsis plants. Plant Biotechnol J 2008, 6:486-503. 10.1111/j.1467-7652.2008.00336.x, 18384508.
-
(2008)
Plant Biotechnol J
, vol.6
, pp. 486-503
-
-
Zhou, Q.Y.1
Tian, A.G.2
Zou, H.F.3
Xie, Z.M.4
Lei, G.5
Huang, J.6
Wang, C.M.7
Wang, H.W.8
Zhang, J.S.9
Chen, S.Y.10
-
16
-
-
65349106487
-
Identification and characterization of the WRKY transcription factor family in Pinus monticola
-
10.1139/G08-106, 19132074
-
Liu JJ, Ekramoddoullah AK. Identification and characterization of the WRKY transcription factor family in Pinus monticola. Genome 2009, 52:77-88. 10.1139/G08-106, 19132074.
-
(2009)
Genome
, vol.52
, pp. 77-88
-
-
Liu, J.J.1
Ekramoddoullah, A.K.2
-
17
-
-
18244374199
-
The WRKY family of transcription factors in rice and Arabidopsis and their origins
-
10.1093/dnares/12.1.9, 16106749
-
Wu KL, Guo ZJ, Wang HH, Li J. The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Research 2005, 12:9-26. 10.1093/dnares/12.1.9, 16106749.
-
(2005)
DNA Research
, vol.12
, pp. 9-26
-
-
Wu, K.L.1
Guo, Z.J.2
Wang, H.H.3
Li, J.4
-
18
-
-
48849106109
-
A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments
-
10.1093/pcp/pcn061, 18413358
-
Ramamoorthy R, Jiang SY, Kumar N, Venkatesh PN, Ramachandran S. A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments. Plant Cell Physiol 2008, 49:865-879. 10.1093/pcp/pcn061, 18413358.
-
(2008)
Plant Cell Physiol
, vol.49
, pp. 865-879
-
-
Ramamoorthy, R.1
Jiang, S.Y.2
Kumar, N.3
Venkatesh, P.N.4
Ramachandran, S.5
-
19
-
-
0037276041
-
Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense response
-
10.1023/A:1020780022549, 12602888
-
Dong J, Chen C, Chen Z. Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense response. Plant Mol Biol 2003, 51:21-37. 10.1023/A:1020780022549, 12602888.
-
(2003)
Plant Mol Biol
, vol.51
, pp. 21-37
-
-
Dong, J.1
Chen, C.2
Chen, Z.3
-
20
-
-
33745466148
-
Physical and functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors
-
10.1105/tpc.105.037523, 1456877, 16603654
-
Xu X, Chen C, Fan B, Chen Z. Physical and functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors. Plant Cell 2006, 18:1310-1326. 10.1105/tpc.105.037523, 1456877, 16603654.
-
(2006)
Plant Cell
, vol.18
, pp. 1310-1326
-
-
Xu, X.1
Chen, C.2
Fan, B.3
Chen, Z.4
-
21
-
-
33645680197
-
WRKY70 modulates the selection of signaling pathways in plant defense
-
10.1111/j.1365-313X.2006.02712.x, 16623907
-
Li J, Brader G, Kariola T, Palva T. WRKY70 modulates the selection of signaling pathways in plant defense. Plant J 2006, 46:477-491. 10.1111/j.1365-313X.2006.02712.x, 16623907.
-
(2006)
Plant J
, vol.46
, pp. 477-491
-
-
Li, J.1
Brader, G.2
Kariola, T.3
Palva, T.4
-
22
-
-
33748316541
-
CaWRKY2, a chili pepper transcription factor, is rapidly induced by incompatible plant pathogens
-
Oh SK, Yi SY, Yu SH, Moon JS, Park JM, Choi D. CaWRKY2, a chili pepper transcription factor, is rapidly induced by incompatible plant pathogens. Mol Cells 2006, 22:58-64.
-
(2006)
Mol Cells
, vol.22
, pp. 58-64
-
-
Oh, S.K.1
Yi, S.Y.2
Yu, S.H.3
Moon, J.S.4
Park, J.M.5
Choi, D.6
-
23
-
-
33847204698
-
Functional analysis of Arabidopsis WRKY25 transcription factor in plant defense against Pseudomonas syringae
-
10.1186/1471-2229-7-2, 1780049, 17214894
-
Zheng Z, Mosher SL, Fan B, Klessig DF, Chen Z. Functional analysis of Arabidopsis WRKY25 transcription factor in plant defense against Pseudomonas syringae. BMC Plant Biol 2007, 7:2. 10.1186/1471-2229-7-2, 1780049, 17214894.
-
(2007)
BMC Plant Biol
, vol.7
, pp. 2
-
-
Zheng, Z.1
Mosher, S.L.2
Fan, B.3
Klessig, D.F.4
Chen, Z.5
-
24
-
-
33750554911
-
Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens
-
10.1111/j.1365-313X.2006.02901.x, 17059405
-
Zheng Z, Qamar SA, Chen Z, Mengiste T. Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens. Plant J 2006, 48:592-605. 10.1111/j.1365-313X.2006.02901.x, 17059405.
-
(2006)
Plant J
, vol.48
, pp. 592-605
-
-
Zheng, Z.1
Qamar, S.A.2
Chen, Z.3
Mengiste, T.4
-
25
-
-
0034920412
-
Identification of potato genes induced during colonization by Phytophthora infestans
-
10.1046/j.1364-3703.2001.00059.x, 20573000
-
Beyer K, Binder A, Boller T, Colling M. Identification of potato genes induced during colonization by Phytophthora infestans. Mol Plant Pathol 2001, 2:125-134. 10.1046/j.1364-3703.2001.00059.x, 20573000.
-
(2001)
Mol Plant Pathol
, vol.2
, pp. 125-134
-
-
Beyer, K.1
Binder, A.2
Boller, T.3
Colling, M.4
-
26
-
-
0037384224
-
Members of the Arabidopsis WRKY group III transcription factors are part of different plant defense signaling pathways
-
10.1094/MPMI.2003.16.4.295, 12744458
-
Kalde M, Barth M, Somssich IE, Lippok B. Members of the Arabidopsis WRKY group III transcription factors are part of different plant defense signaling pathways. Mol Plant-Microbe Interact 2003, 16:295-305. 10.1094/MPMI.2003.16.4.295, 12744458.
-
(2003)
Mol Plant-Microbe Interact
, vol.16
, pp. 295-305
-
-
Kalde, M.1
Barth, M.2
Somssich, I.E.3
Lippok, B.4
-
27
-
-
33846444699
-
Arabidopsis WRKY70 is required for full RPP4-mediated disease resistance and basal defense against Hyaloperonospora parasitica
-
10.1094/MPMI-20-2-0120, 17313163
-
Knoth C, Ringler J, Dangl JL, Eulgem T. Arabidopsis WRKY70 is required for full RPP4-mediated disease resistance and basal defense against Hyaloperonospora parasitica. Mol Plant-Microbe Interact 2007, 20:120-128. 10.1094/MPMI-20-2-0120, 17313163.
-
(2007)
Mol Plant-Microbe Interact
, vol.20
, pp. 120-128
-
-
Knoth, C.1
Ringler, J.2
Dangl, J.L.3
Eulgem, T.4
-
28
-
-
0035983845
-
Transparent testa glabra2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor
-
10.1105/tpc.001404, 150785, 12084832
-
Johnson SC, Kolevski B, Smyth DR. Transparent testa glabra2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor. Plant Cell 2002, 14:1359-1375. 10.1105/tpc.001404, 150785, 12084832.
-
(2002)
Plant Cell
, vol.14
, pp. 1359-1375
-
-
Johnson, S.C.1
Kolevski, B.2
Smyth, D.R.3
-
29
-
-
2442429497
-
Characterization of a WRKY transcription factor expressed in late torpedo-stage embryos of Solanum chacoense
-
10.1007/s00425-004-1253-2, 15045588
-
Lagace M, Matton DP. Characterization of a WRKY transcription factor expressed in late torpedo-stage embryos of Solanum chacoense. Planta 2004, 219:185-189. 10.1007/s00425-004-1253-2, 15045588.
-
(2004)
Planta
, vol.219
, pp. 185-189
-
-
Lagace, M.1
Matton, D.P.2
-
30
-
-
0036570997
-
Targets of AtWRKY6 regulation during plant senescence and pathogen defense
-
10.1101/gad.222702, 186251, 12000796
-
Robatzek S, Somssich IE. Targets of AtWRKY6 regulation during plant senescence and pathogen defense. Genes Dev 2002, 16:1139-1149. 10.1101/gad.222702, 186251, 12000796.
-
(2002)
Genes Dev
, vol.16
, pp. 1139-1149
-
-
Robatzek, S.1
Somssich, I.E.2
-
31
-
-
1942501820
-
A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells
-
10.1104/pp.103.034967, 419826, 15047897
-
Zhang ZL, Xie Z, Zou X, Casaretto J, David TH, Zhen QJ. A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Plant Physiol 2004, 134:1500-1513. 10.1104/pp.103.034967, 419826, 15047897.
-
(2004)
Plant Physiol
, vol.134
, pp. 1500-1513
-
-
Zhang, Z.L.1
Xie, Z.2
Zou, X.3
Casaretto, J.4
David, T.H.5
Zhen, Q.J.6
-
32
-
-
11244263985
-
A WRKY gene from creosote bush encodes an activator of the abscisic acid signaling pathway
-
10.1074/jbc.M408536200, 15504732
-
Zou X, Seemann JR, Neuman D, Shen QJ. A WRKY gene from creosote bush encodes an activator of the abscisic acid signaling pathway. J Biol Chem 2004, 279:55770-55779. 10.1074/jbc.M408536200, 15504732.
-
(2004)
J Biol Chem
, vol.279
, pp. 55770-55779
-
-
Zou, X.1
Seemann, J.R.2
Neuman, D.3
Shen, Q.J.4
-
33
-
-
33646830944
-
Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells
-
10.1111/j.1365-313X.2006.02694.x, 16623886
-
Xie Z, Zhang ZL, Zou X, Yang G, Komatsu S, Shen QJ. Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells. Plant J 2006, 46:231-242. 10.1111/j.1365-313X.2006.02694.x, 16623886.
-
(2006)
Plant J
, vol.46
, pp. 231-242
-
-
Xie, Z.1
Zhang, Z.L.2
Zou, X.3
Yang, G.4
Komatsu, S.5
Shen, Q.J.6
-
34
-
-
0034486764
-
Identification of genes encoding receptorlike protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis
-
Du L, Chen Z. Identification of genes encoding receptorlike protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis. Plant J 2002, 24:837-847.
-
(2002)
Plant J
, vol.24
, pp. 837-847
-
-
Du, L.1
Chen, Z.2
-
35
-
-
0036779396
-
Transcription factors in plant defense and stress response
-
10.1016/S1369-5266(02)00289-3, 12183182
-
Karam BS, Rhonda CF, Luis OS. Transcription factors in plant defense and stress response. Curr Opin Plant Biol 2002, 5:430-436. 10.1016/S1369-5266(02)00289-3, 12183182.
-
(2002)
Curr Opin Plant Biol
, vol.5
, pp. 430-436
-
-
Karam, B.S.1
Rhonda, C.F.2
Luis, O.S.3
-
36
-
-
0036679053
-
Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray
-
10.1046/j.1365-313X.2002.01359.x, 12164808
-
Motoaki S, Mari NJ, Ishida TN, Miki F, Youko O, Asako K, Maiko N, Akiko E, Tetsuya S, Masakazu S, Kenji A, Teruaki T, Kazuko YS, Piero C, Jun K, Yoshihide H, Kazuo S. Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J 2002, 31:279-292. 10.1046/j.1365-313X.2002.01359.x, 12164808.
-
(2002)
Plant J
, vol.31
, pp. 279-292
-
-
Motoaki, S.1
Mari, N.J.2
Ishida, T.N.3
Miki, F.4
Youko, O.5
Asako, K.6
Maiko, N.7
Akiko, E.8
Tetsuya, S.9
Masakazu, S.10
Kenji, A.11
Teruaki, T.12
Kazuko, Y.S.13
Piero, C.14
Jun, K.15
Yoshihide, H.16
Kazuo, S.17
-
37
-
-
34247200577
-
The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
-
10.1111/j.1365-313X.2007.03052.x, 17376166
-
Kilian J, Whitehead D, Horak J, Wanke D, Weinl S, Batistic O, D'Angelo C, Bornberg-Bauer E, Kudla J, Harter K. The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J 2007, 50:347-363. 10.1111/j.1365-313X.2007.03052.x, 17376166.
-
(2007)
Plant J
, vol.50
, pp. 347-363
-
-
Kilian, J.1
Whitehead, D.2
Horak, J.3
Wanke, D.4
Weinl, S.5
Batistic, O.6
D'Angelo, C.7
Bornberg-Bauer, E.8
Kudla, J.9
Harter, K.10
-
38
-
-
14644434896
-
Hv-WRKY38: a new transcription factor involved in cold- and drought-response in barley
-
10.1007/s11103-004-0906-7, 15604689
-
Mare C, Mazzucotelli E, Crosatti C, Francia E, Stanca AM, Cattivelli L. Hv-WRKY38: a new transcription factor involved in cold- and drought-response in barley. Plant Mol Biol 2004, 55:399-416. 10.1007/s11103-004-0906-7, 15604689.
-
(2004)
Plant Mol Biol
, vol.55
, pp. 399-416
-
-
Mare, C.1
Mazzucotelli, E.2
Crosatti, C.3
Francia, E.4
Stanca, A.M.5
Cattivelli, L.6
-
39
-
-
51849121439
-
Genetic association of ETHYLENE-INSENSITIVE3-like sequence with the sex-determining M locus in cucumber (Cucumis sativus L.)
-
Liu SQ, Xu L, Jia ZQ, Xu Y, Yang Q, Fei ZJ, Lu XY, Chen HM, Huang SW. Genetic association of ETHYLENE-INSENSITIVE3-like sequence with the sex-determining M locus in cucumber (Cucumis sativus L.). Theor Appl Genet 2004, 117:927-933.
-
(2004)
Theor Appl Genet
, vol.117
, pp. 927-933
-
-
Liu, S.Q.1
Xu, L.2
Jia, Z.Q.3
Xu, Y.4
Yang, Q.5
Fei, Z.J.6
Lu, X.Y.7
Chen, H.M.8
Huang, S.W.9
-
40
-
-
80053918204
-
The genome of the cucumber, Cucumis sativus L
-
Huang SW, Li RQ, Zhang ZH, Li L, Gu XF, Fan W, Lucas WJ, Wang XW, Xie BY, Ni PX, Ren YY, Zhu HM, Li J, Lin K, Jin WW, Fei ZJ, Li GC, Staub J, Kilian A, Vossen EAGV, Wu Y, Guo J, He J, Jia ZQ, Ren Y, Tian G, Lu Y, Ruan J, Qian WB, Wang MW, et al. The genome of the cucumber, Cucumis sativus L. Nature Genetic 2009, 475:1-7.
-
(2009)
Nature Genetic
, vol.475
, pp. 1-7
-
-
Huang, S.W.1
Li, R.Q.2
Zhang, Z.H.3
Li, L.4
Gu, X.F.5
Fan, W.6
Lucas, W.J.7
Wang, X.W.8
Xie, B.Y.9
Ni, P.X.10
Ren, Y.Y.11
Zhu, H.M.12
Li, J.13
Lin, K.14
Jin, W.W.15
Fei, Z.J.16
Li, G.C.17
Staub, J.18
Kilian, A.19
Vossen, E.A.G.V.20
Wu, Y.21
Guo, J.22
He, J.23
Jia, Z.Q.24
Ren, Y.25
Tian, G.26
Lu, Y.27
Ruan, J.28
Qian, W.B.29
Wang, M.W.30
more..
-
41
-
-
34347223614
-
The WRKY gene family in rice (Oryza sativa)
-
Ross CA, Liu Y, Shen QJ. The WRKY gene family in rice (Oryza sativa). J Integr Plant Biol 2007, 49:827-842.
-
(2007)
J Integr Plant Biol
, vol.49
, pp. 827-842
-
-
Ross, C.A.1
Liu, Y.2
Shen, Q.J.3
-
42
-
-
0035032414
-
Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes
-
135537, 11283350
-
Rossberg M, Theres K, Acarkan A, Herrero R, Schmitt T, Schumacher K, Schmitz G, Schmidt R. Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes. Plant Cell 2001, 13:979-988. 135537, 11283350.
-
(2001)
Plant Cell
, vol.13
, pp. 979-988
-
-
Rossberg, M.1
Theres, K.2
Acarkan, A.3
Herrero, R.4
Schmitt, T.5
Schumacher, K.6
Schmitz, G.7
Schmidt, R.8
-
43
-
-
16444378057
-
Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus
-
10.1007/s00239-004-0144-2, 15785851
-
Schauser L, Wieloch W, Stougaard J. Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus. J Mol Evol 2005, 60:229-237. 10.1007/s00239-004-0144-2, 15785851.
-
(2005)
J Mol Evol
, vol.60
, pp. 229-237
-
-
Schauser, L.1
Wieloch, W.2
Stougaard, J.3
-
44
-
-
14344250098
-
The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants
-
10.1186/1471-2148-5-1, 544883, 15629062
-
Zhang YJ, Wang LJ. The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evolutionary Biology 2005, 5:1. 10.1186/1471-2148-5-1, 544883, 15629062.
-
(2005)
BMC Evolutionary Biology
, vol.5
, pp. 1
-
-
Zhang, Y.J.1
Wang, L.J.2
-
45
-
-
0037313579
-
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
-
10.1101/gr.751803, 420368, 12566392
-
Blanc G, Hokamp K, Wolfe KH. A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res 2003, 13:137-144. 10.1101/gr.751803, 420368, 12566392.
-
(2003)
Genome Res
, vol.13
, pp. 137-144
-
-
Blanc, G.1
Hokamp, K.2
Wolfe, K.H.3
-
46
-
-
2942620598
-
The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
-
10.1186/1471-2229-4-10, 446195, 15171794
-
Cannon SB, Mitra A, Baumgarten A, Young ND, May G. The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol 2004, 4:10. 10.1186/1471-2229-4-10, 446195, 15171794.
-
(2004)
BMC Plant Biol
, vol.4
, pp. 10
-
-
Cannon, S.B.1
Mitra, A.2
Baumgarten, A.3
Young, N.D.4
May, G.5
-
47
-
-
10944230777
-
Duplication and divergence: The evolution of new genes and old ideas
-
10.1146/annurev.genet.38.072902.092831, 15568988
-
Taylor JS, Raes J. Duplication and divergence: The evolution of new genes and old ideas. Annu Rev Genet 2004, 38:615-643. 10.1146/annurev.genet.38.072902.092831, 15568988.
-
(2004)
Annu Rev Genet
, vol.38
, pp. 615-643
-
-
Taylor, J.S.1
Raes, J.2
-
48
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
10.1038/nature06148, 17721507
-
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007, 449:463-467. 10.1038/nature06148, 17721507.
-
(2007)
Nature
, vol.449
, pp. 463-467
-
-
Jaillon, O.1
Aury, J.M.2
Noel, B.3
Policriti, A.4
Clepet, C.5
Casagrande, A.6
Choisne, N.7
Aubourg, S.8
Vitulo, N.9
Jubin, C.10
Vezzi, A.11
Legeai, F.12
Hugueney, P.13
Dasilva, C.14
Horner, D.15
Mica, E.16
Jublot, D.17
Poulain, J.18
Bruyere, C.19
Billault, A.20
Segurens, B.21
Gouyvenoux, M.22
Ugarte, E.23
Cattonaro, F.24
Anthouard, V.25
Vico, V.26
Del Fabbro, C.27
Alaux, M.28
Di Gaspero, G.29
Dumas, V.30
more..
-
49
-
-
77649340718
-
Characterization of WRKY co-regulatory networks in rice and Arabidopsis
-
10.1186/1471-2229-9-120, 2761919, 19772648
-
S Berri P, Abbruscato O, Faivre-Rampant AC, Brasileiro I, Fumasoni K, Satoh S, Kikuchi L, Mizzi P, Morandini ME, Pe P, Piffanelli P. Characterization of WRKY co-regulatory networks in rice and Arabidopsis. BMC Plant Biol 2009, 9:120. 10.1186/1471-2229-9-120, 2761919, 19772648.
-
(2009)
BMC Plant Biol
, vol.9
, pp. 120
-
-
S. Berri, P.1
Abbruscato, O.2
Faivre-Rampant, A.C.3
Brasileiro, I.4
Fumasoni, K.5
Satoh, S.6
Kikuchi, L.7
Mizzi, P.8
Morandini, M.E.9
Pe, P.10
Piffanelli, P.11
-
50
-
-
0141519279
-
OrthoMCL: identification of ortholog groups for eukaryotic genomes
-
10.1101/gr.1224503, 403725, 12952885
-
Li L, Stoeckert CJ, Roos DS. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 2003, 13:2178-2189. 10.1101/gr.1224503, 403725, 12952885.
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
51
-
-
37849023306
-
Assessing performance of orthology detection strategies applied to eukaryotic genomes
-
10.1371/journal.pone.0000383, 1849888, 17440619
-
Chen F, Mackey AJ, Vermunt JK, Roos DS. Assessing performance of orthology detection strategies applied to eukaryotic genomes. PLoS ONE 2007, 2:e383. 10.1371/journal.pone.0000383, 1849888, 17440619.
-
(2007)
PLoS ONE
, vol.2
-
-
Chen, F.1
Mackey, A.J.2
Vermunt, J.K.3
Roos, D.S.4
-
52
-
-
44249092978
-
Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots
-
10.1186/1471-2164-9-194, 2390551, 18442363
-
Mangelsen E, Kilian J, Berendzen KW, Kolukisaoglu H, Harter K, Jansson C, Wanke D. Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots. BMC Genomics 2008, 9:194. 10.1186/1471-2164-9-194, 2390551, 18442363.
-
(2008)
BMC Genomics
, vol.9
, pp. 194
-
-
Mangelsen, E.1
Kilian, J.2
Berendzen, K.W.3
Kolukisaoglu, H.4
Harter, K.5
Jansson, C.6
Wanke, D.7
-
53
-
-
3142732892
-
Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
-
10.1105/tpc.021410, 514153, 15208398
-
Blanc G, Wolfe KH. Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 2004, 16:1679-1691. 10.1105/tpc.021410, 514153, 15208398.
-
(2004)
Plant Cell
, vol.16
, pp. 1679-1691
-
-
Blanc, G.1
Wolfe, K.H.2
-
54
-
-
0037500141
-
Evolution by gene duplication--an update
-
Zhang J. Evolution by gene duplication--an update. Trends Ecol Evol 2003, 18:292-298.
-
(2003)
Trends Ecol Evol
, vol.18
, pp. 292-298
-
-
Zhang, J.1
-
55
-
-
84871345497
-
The Arabidopsis Information Resource (TAIR)
-
The Arabidopsis Information Resource (TAIR). , http://www.arabidopsis.org/
-
-
-
-
56
-
-
84871120858
-
Rice Genome Annotation Project
-
Rice Genome Annotation Project. , http://rice.plantbiology.msu.edu/index.shtml
-
-
-
-
57
-
-
79959906665
-
The Pfam database of protein domains and HMMs
-
The Pfam database of protein domains and HMMs. , http://pfam.jouy.inra.fr/
-
-
-
-
58
-
-
80053908750
-
Cucumber Genome DataBase
-
Cucumber Genome DataBase. , http://cucumber.genomics.org.cn/page/cucumber/index.jsp
-
-
-
-
59
-
-
0031574072
-
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
10.1093/nar/25.24.4876, 147148, 9396791
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997, 25:4876-4882. 10.1093/nar/25.24.4876, 147148, 9396791.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
60
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
10.1093/molbev/msm092, 17488738
-
Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 2007, 24:1596-1599. 10.1093/molbev/msm092, 17488738.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
61
-
-
0000122573
-
PHYLIP--Phylogeny Inference Package (Version 3.2)
-
Felsenstein J. PHYLIP--Phylogeny Inference Package (Version 3.2). Cladistics 1989, 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
62
-
-
57149097073
-
Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.)
-
10.1093/jxb/ern248, 2639015, 18832187
-
Zhang GY, Chen M, Chen XP, Xu ZS, Guan S, Li LC, Li AL, Guo JM, Mao L, Ma YZ. Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.). J Exp Bot 2008, 59:4095-4107. 10.1093/jxb/ern248, 2639015, 18832187.
-
(2008)
J Exp Bot
, vol.59
, pp. 4095-4107
-
-
Zhang, G.Y.1
Chen, M.2
Chen, X.P.3
Xu, Z.S.4
Guan, S.5
Li, L.C.6
Li, A.L.7
Guo, J.M.8
Mao, L.9
Ma, Y.Z.10
-
63
-
-
33747823564
-
MEME: discovering and analyzing DNA and protein sequence motifs
-
10.1093/nar/gkl198, 1538909, 16845028
-
Bailey TL, Williams N, Misleh C, Li WW. MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res 2006, 34:W369-W373. 10.1093/nar/gkl198, 1538909, 16845028.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Bailey, T.L.1
Williams, N.2
Misleh, C.3
Li, W.W.4
-
64
-
-
77649336854
-
Expression analyses indicate the involvement of sunflower WRKY transcription factors in stress responses, and phylogenetic reconstructions reveal the existence of a novel clade in the Asteraceae
-
Jorge I, Ribichich KF, Dezar CA, Chan RL. Expression analyses indicate the involvement of sunflower WRKY transcription factors in stress responses, and phylogenetic reconstructions reveal the existence of a novel clade in the Asteraceae. Plant Science 2010, 178:398-410.
-
(2010)
Plant Science
, vol.178
, pp. 398-410
-
-
Jorge, I.1
Ribichich, K.F.2
Dezar, C.A.3
Chan, R.L.4
-
65
-
-
80053913019
-
Weigel World Database
-
Weigel World Database. , http://www.weigelworld.org/resources/microarray/AtGenExpress/
-
-
-
-
66
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
10.1093/molbev/msm088, 17483113
-
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24:1586-1591. 10.1093/molbev/msm088, 17483113.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
67
-
-
51849119117
-
Molecular evolution of the CPP-like gene family in plants: Insights from comparative genomics of Arabidopsis and rice
-
10.1007/s00239-008-9143-z, 18696028
-
Yang Z, Gu S, Wang X, Li W, Tang Z, Xu C. Molecular evolution of the CPP-like gene family in plants: Insights from comparative genomics of Arabidopsis and rice. J Mol Evol 2008, 67:266-277. 10.1007/s00239-008-9143-z, 18696028.
-
(2008)
J Mol Evol
, vol.67
, pp. 266-277
-
-
Yang, Z.1
Gu, S.2
Wang, X.3
Li, W.4
Tang, Z.5
Xu, C.6
-
68
-
-
35348966977
-
Ds insertion mutagenesis as an efficient tool to produce diverse variations for rice breeding
-
10.1007/s11103-007-9233-0, 17891459
-
Jiang SY, Bachmann D, La H, Ma Z, Venkatesh PN, Ramamoorthy R, Ramachandran S. Ds insertion mutagenesis as an efficient tool to produce diverse variations for rice breeding. Plant Mol Biol 2007, 65:385-402. 10.1007/s11103-007-9233-0, 17891459.
-
(2007)
Plant Mol Biol
, vol.65
, pp. 385-402
-
-
Jiang, S.Y.1
Bachmann, D.2
La, H.3
Ma, Z.4
Venkatesh, P.N.5
Ramamoorthy, R.6
Ramachandran, S.7
|