메뉴 건너뛰기




Volumn 13, Issue 10, 2012, Pages

Epigenetic interplay between mouse endogenous retroviruses and host genes

Author keywords

DNA methylation; epigenetics; evolution; heterochromatin spreading; mouse endogenous retroviruses; transposable element

Indexed keywords

HISTONE H3; CHROMATIN; VIRUS DNA;

EID: 84866852810     PISSN: None     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2012-13-10-R89     Document Type: Article
Times cited : (46)

References (56)
  • 1
    • 70350232064 scopus 로고    scopus 로고
    • Endogenous retroviral LTRs as promoters for human genes: a critical assessment.
    • Cohen CJ, Lock WM, Mager DL. Endogenous retroviral LTRs as promoters for human genes: a critical assessment. Gene 2009, 448:105-114.
    • (2009) Gene , vol.448 , pp. 105-114
    • Cohen, C.J.1    Lock, W.M.2    Mager, D.L.3
  • 2
    • 84867050577 scopus 로고    scopus 로고
    • Transposable elements : an abundant and natural source of regulatory sequences for host genes.
    • Rebollo R, Romanish MT, Mager DL. Transposable elements : an abundant and natural source of regulatory sequences for host genes. Annu Rev Genet 2012, 46:21-42.
    • (2012) Annu Rev Genet , vol.46 , pp. 21-42
    • Rebollo, R.1    Romanish, M.T.2    Mager, D.L.3
  • 4
    • 0031662164 scopus 로고    scopus 로고
    • Transcription of IAP endogenous retroviruses is constrained by cytosine methylation.
    • Walsh CP, Chaillet JR, Bestor TH. Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. Nat Genet 1998, 20:116-117.
    • (1998) Nat Genet , vol.20 , pp. 116-117
    • Walsh, C.P.1    Chaillet, J.R.2    Bestor, T.H.3
  • 8
    • 0027525976 scopus 로고
    • A Cis-acting element accounts for a conserved methylation pattern upstream of the mouse adenine phosphoribosyltransferase gene.
    • Mummaneni P, Bishop PL, Turker MS. A Cis-acting element accounts for a conserved methylation pattern upstream of the mouse adenine phosphoribosyltransferase gene. J Biol Chem 1993, 268:552-558.
    • (1993) J Biol Chem , vol.268 , pp. 552-558
    • Mummaneni, P.1    Bishop, P.L.2    Turker, M.S.3
  • 9
    • 0033579468 scopus 로고    scopus 로고
    • Tandem B1 elements located in a mouse methylation center provide a target for de novo DNA methylation.
    • Yates PA, Burman RW, Mummaneni P, Krussel S, Turker MS. Tandem B1 elements located in a mouse methylation center provide a target for de novo DNA methylation. J Biol Chem 1999, 274:36357-36361.
    • (1999) J Biol Chem , vol.274 , pp. 36357-36361
    • Yates, P.A.1    Burman, R.W.2    Mummaneni, P.3    Krussel, S.4    Turker, M.S.5
  • 10
    • 0028014280 scopus 로고
    • Enhancement of reporter gene de novo methylation by DNA fragments from the alpha-fetoprotein control region.
    • Hasse A, Schulz WA. Enhancement of reporter gene de novo methylation by DNA fragments from the alpha-fetoprotein control region. J Biol Chem 1994, 269:1821-1826.
    • (1994) J Biol Chem , vol.269 , pp. 1821-1826
    • Hasse, A.1    Schulz, W.A.2
  • 11
    • 68149144366 scopus 로고    scopus 로고
    • Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression.
    • Hollister JD, Gaut BS. Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res 2009, 19:1419-1428.
    • (2009) Genome Res , vol.19 , pp. 1419-1428
    • Hollister, J.D.1    Gaut, B.S.2
  • 12
    • 4544223707 scopus 로고    scopus 로고
    • Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L.
    • Bourc'his D, Bestor TH. Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L. Nature 2004, 431:96-99.
    • (2004) Nature , vol.431 , pp. 96-99
    • Bourc'his, D.1    Bestor, T.H.2
  • 15
    • 77449148128 scopus 로고    scopus 로고
    • Variable DNA methylation of transposable elements: the case study of mouse Early Transposons.
    • Reiss D, Zhang Y, Rouhi A, Reuter M, Mager DL. Variable DNA methylation of transposable elements: the case study of mouse Early Transposons. Epigenetics 2010, 5:68-79.
    • (2010) Epigenetics , vol.5 , pp. 68-79
    • Reiss, D.1    Zhang, Y.2    Rouhi, A.3    Reuter, M.4    Mager, D.L.5
  • 16
    • 40149098109 scopus 로고    scopus 로고
    • Genome-wide assessments reveal extremely high levels of polymorphism of two active families of mouse endogenous retroviral elements.
    • Zhang Y, Maksakova IA, Gagnier L, van de Lagemaat LN, Mager DL. Genome-wide assessments reveal extremely high levels of polymorphism of two active families of mouse endogenous retroviral elements. PLoS Genet 2008, 4:e1000007.
    • (2008) PLoS Genet , vol.4
    • Zhang, Y.1    Maksakova, I.A.2    Gagnier, L.3    van de Lagemaat, L.N.4    Mager, D.L.5
  • 19
    • 84860589346 scopus 로고    scopus 로고
    • Retrotransposons as a major source of epigenetic variations in the mammalian genome.
    • Ekram MB, Kang K, Kim H, Kim J. Retrotransposons as a major source of epigenetic variations in the mammalian genome. Epigenetics 2012, 7:370-382.
    • (2012) Epigenetics , vol.7 , pp. 370-382
    • Ekram, M.B.1    Kang, K.2    Kim, H.3    Kim, J.4
  • 24
    • 34147197541 scopus 로고    scopus 로고
    • DNA methylation dictates histone H3K4 methylation.
    • Okitsu CY, Hsieh CL. DNA methylation dictates histone H3K4 methylation. Mol Cell Biol 2007, 27:2746-2757.
    • (2007) Mol Cell Biol , vol.27 , pp. 2746-2757
    • Okitsu, C.Y.1    Hsieh, C.L.2
  • 26
    • 33747453473 scopus 로고    scopus 로고
    • Insulators: exploiting transcriptional and epigenetic mechanisms.
    • Gaszner M, Felsenfeld G. Insulators: exploiting transcriptional and epigenetic mechanisms. Nat Rev Genet 2006, 7:703-713.
    • (2006) Nat Rev Genet , vol.7 , pp. 703-713
    • Gaszner, M.1    Felsenfeld, G.2
  • 27
    • 65549159993 scopus 로고    scopus 로고
    • Epigenetic silencing of the p16(INK4a) tumor suppressor is associated with loss of CTCF binding and a chromatin boundary.
    • Witcher M, Emerson BM. Epigenetic silencing of the p16(INK4a) tumor suppressor is associated with loss of CTCF binding and a chromatin boundary. Mol Cell 2009, 34:271-284.
    • (2009) Mol Cell , vol.34 , pp. 271-284
    • Witcher, M.1    Emerson, B.M.2
  • 29
    • 60149095014 scopus 로고    scopus 로고
    • Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains.
    • Cuddapah S, Jothi R, Schones DE, Roh TY, Cui K, Zhao K. Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res 2009, 19:24-32.
    • (2009) Genome Res , vol.19 , pp. 24-32
    • Cuddapah, S.1    Jothi, R.2    Schones, D.E.3    Roh, T.Y.4    Cui, K.5    Zhao, K.6
  • 30
    • 7444260846 scopus 로고    scopus 로고
    • The ENCODE (ENCyclopedia Of DNA Elements) Project.
    • Consortium EP. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 2004, 306:636-640.
    • (2004) Science , vol.306 , pp. 636-640
    • Consortium, E.P.1
  • 31
    • 33846556612 scopus 로고    scopus 로고
    • Repeated recruitment of LTR retrotransposons as promoters by the anti-apoptotic locus NAIP during mammalian evolution.
    • Romanish MT, Lock WM, van de Lagemaat LN, Dunn CA, Mager DL. Repeated recruitment of LTR retrotransposons as promoters by the anti-apoptotic locus NAIP during mammalian evolution. PLoS Genet 2007, 3:e10.
    • (2007) PLoS Genet , vol.3
    • Romanish, M.T.1    Lock, W.M.2    van de Lagemaat, L.N.3    Dunn, C.A.4    Mager, D.L.5
  • 33
    • 0036798062 scopus 로고    scopus 로고
    • Retroelement distributions in the human genome: variations associated with age and proximity to genes.
    • Medstrand P, van de Lagemaat LN, Mager DL. Retroelement distributions in the human genome: variations associated with age and proximity to genes. Genome Res 2002, 12:1483-1495.
    • (2002) Genome Res , vol.12 , pp. 1483-1495
    • Medstrand, P.1    van de Lagemaat, L.N.2    Mager, D.L.3
  • 35
    • 37249012285 scopus 로고    scopus 로고
    • Large-scale survey of cytosine methylation of retrotransposons and the impact of readout transcription from long terminal repeats on expression of adjacent rice genes.
    • Kashkush K, Khasdan V. Large-scale survey of cytosine methylation of retrotransposons and the impact of readout transcription from long terminal repeats on expression of adjacent rice genes. Genetics 2007, 177:1975-1985.
    • (2007) Genetics , vol.177 , pp. 1975-1985
    • Kashkush, K.1    Khasdan, V.2
  • 36
    • 34047116826 scopus 로고    scopus 로고
    • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome.
    • Weber M, Hellmann I, Stadler MB, Ramos L, Paabo S, Rebhan M, Schubeler D. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat Genet 2007, 39:457-466.
    • (2007) Nat Genet , vol.39 , pp. 457-466
    • Weber, M.1    Hellmann, I.2    Stadler, M.B.3    Ramos, L.4    Paabo, S.5    Rebhan, M.6    Schubeler, D.7
  • 37
    • 80054880084 scopus 로고    scopus 로고
    • DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter.
    • Han H, Cortez CC, Yang X, Nichols PW, Jones PA, Liang G. DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter. Hum Mol Genet 2011, 20:4299-4310.
    • (2011) Hum Mol Genet , vol.20 , pp. 4299-4310
    • Han, H.1    Cortez, C.C.2    Yang, X.3    Nichols, P.W.4    Jones, P.A.5    Liang, G.6
  • 38
    • 33644528417 scopus 로고    scopus 로고
    • Evidence for epigenetic maintenance of Ly49a monoallelic gene expression.
    • Rouhi A, Gagnier L, Takei F, Mager DL. Evidence for epigenetic maintenance of Ly49a monoallelic gene expression. J Immunol 2006, 176:2991-2999.
    • (2006) J Immunol , vol.176 , pp. 2991-2999
    • Rouhi, A.1    Gagnier, L.2    Takei, F.3    Mager, D.L.4
  • 40
    • 43149106530 scopus 로고    scopus 로고
    • Putative zinc finger protein binding sites are over-represented in the boundaries of methylation-resistant CpG islands in the human genome.
    • Fan S, Fang F, Zhang X, Zhang MQ. Putative zinc finger protein binding sites are over-represented in the boundaries of methylation-resistant CpG islands in the human genome. PLoS One 2007, 2:e1184.
    • (2007) PLoS One , vol.2
    • Fan, S.1    Fang, F.2    Zhang, X.3    Zhang, M.Q.4
  • 41
    • 79956330964 scopus 로고    scopus 로고
    • CpG islands and the regulation of transcription.
    • Deaton AM, Bird A. CpG islands and the regulation of transcription. Genes Dev 2011, 25:1010-1022.
    • (2011) Genes Dev , vol.25 , pp. 1010-1022
    • Deaton, A.M.1    Bird, A.2
  • 42
    • 78650304236 scopus 로고    scopus 로고
    • Charting histone modifications and the functional organization of mammalian genomes.
    • Zhou VW, Goren A, Bernstein BE. Charting histone modifications and the functional organization of mammalian genomes. Nat Rev Genet 2011, 12:7-18.
    • (2011) Nat Rev Genet , vol.12 , pp. 7-18
    • Zhou, V.W.1    Goren, A.2    Bernstein, B.E.3
  • 43
    • 0035895304 scopus 로고    scopus 로고
    • CpG island protects Rous sarcoma virus-derived vectors integrated into nonpermissive cells from DNA methylation and transcriptional suppression.
    • Hejnar J, Hajkova P, Plachy J, Elleder D, Stepanets V, Svoboda J. CpG island protects Rous sarcoma virus-derived vectors integrated into nonpermissive cells from DNA methylation and transcriptional suppression. Proc Natl Acad Sci USA 2001, 98:565-569.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 565-569
    • Hejnar, J.1    Hajkova, P.2    Plachy, J.3    Elleder, D.4    Stepanets, V.5    Svoboda, J.6
  • 44
    • 84863214203 scopus 로고    scopus 로고
    • Transcriptional provirus silencing as a crosstalk of de novo DNA methylation and epigenomic features at the integration site.
    • Senigl F, Auxt M, Hejnar J. Transcriptional provirus silencing as a crosstalk of de novo DNA methylation and epigenomic features at the integration site. Nucleic Acids Res 2012,
    • (2012) Nucleic Acids Res
    • Senigl, F.1    Auxt, M.2    Hejnar, J.3
  • 45
    • 0037423930 scopus 로고    scopus 로고
    • Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin.
    • Meneghini MD, Wu M, Madhani HD. Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin. Cell 2003, 112:725-736.
    • (2003) Cell , vol.112 , pp. 725-736
    • Meneghini, M.D.1    Wu, M.2    Madhani, H.D.3
  • 47
    • 84870650314 scopus 로고    scopus 로고
    • UCSC Genome Bioinformatics
    • UCSC Genome Bioinformatics. , http://genome.ucsc.edu
  • 48
    • 33846862405 scopus 로고    scopus 로고
    • High-throughput mapping of the chromatin structure of human promoters.
    • Ozsolak F, Song JS, Liu XS, Fisher DE. High-throughput mapping of the chromatin structure of human promoters. Nat Biotechnol 2007, 25:244-248.
    • (2007) Nat Biotechnol , vol.25 , pp. 244-248
    • Ozsolak, F.1    Song, J.S.2    Liu, X.S.3    Fisher, D.E.4
  • 50
    • 84860174658 scopus 로고    scopus 로고
    • Comprehensive DNA methylation profiling of human repetitive DNA elements using an MeDIP-on-RepArray assay.
    • Gilson E, Horard B. Comprehensive DNA methylation profiling of human repetitive DNA elements using an MeDIP-on-RepArray assay. Methods Mol Biol 2012, 859:267-291.
    • (2012) Methods Mol Biol , vol.859 , pp. 267-291
    • Gilson, E.1    Horard, B.2
  • 51
    • 34547904256 scopus 로고    scopus 로고
    • Widely variable endogenous retroviral methylation levels in human placenta.
    • Reiss D, Zhang Y, Mager DL. Widely variable endogenous retroviral methylation levels in human placenta. Nucleic Acids Res 2007, 35:4743-4754.
    • (2007) Nucleic Acids Res , vol.35 , pp. 4743-4754
    • Reiss, D.1    Zhang, Y.2    Mager, D.L.3
  • 52
    • 48449097251 scopus 로고    scopus 로고
    • QUMA: quantification tool for methylation analysis.
    • Kumaki Y, Oda M, Okano M. QUMA: quantification tool for methylation analysis. Nucleic Acids Res 2008, 36:W170-175.
    • (2008) Nucleic Acids Res , vol.36
    • Kumaki, Y.1    Oda, M.2    Okano, M.3
  • 54
    • 84878066623 scopus 로고    scopus 로고
    • Transcription factor binding sites dataset
    • Transcription factor binding sites dataset. , http://genome.ucsc.edu/cgi-bin/hgFileUi?db=mm9&g=wgEncodeLicrTfbs
  • 55
    • 84878062241 scopus 로고    scopus 로고
    • Histone dataset
    • Histone dataset. , http://genome.ucsc.edu/cgi-bin/hgFileUi?db=mm9&g=wgEncodeLicrHistone


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.