메뉴 건너뛰기




Volumn 859, Issue , 2012, Pages 267-291

Comprehensive DNA methylation profiling of human repetitive DNA elements using an meDIP-on-repArray assay

Author keywords

5 Methylcytosine (5mC) antibody; DNA methylation; DNA repeats; DNA repetitive sequences; DNA satellite; Epigenetics; MeDIP on chip; Oligonucleotide microarray; Transposable elements

Indexed keywords

CARBOCYANINE; CYANINE DYE; DNA; FLUORESCENT DYE;

EID: 84860174658     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-603-6_16     Document Type: Article
Times cited : (9)

References (22)
  • 2
    • 33846704345 scopus 로고    scopus 로고
    • Inviting instability: Transposable elements, doublestrand breaks, and the maintenance of genome integrity
    • 1- 2): 46- 59. doi:S0027-5107(06) 00333-2
    • Hedges DJ, Deininger PL (2007) Inviting instability: Transposable elements, doublestrand breaks, and the maintenance of genome integrity. Mutat Res 616 (1-2):46-59. doi:S0027-5107(06)00333-2
    • (2007) Mutat. Res. , vol.616
    • Hedges, D.J.1    Deininger, P.L.2
  • 3
    • 71049188001 scopus 로고    scopus 로고
    • A transcriptomic analysis of human centromeric and pericentric sequences in normal and tumor cells
    • gkp639
    • Eymery A, et al. (2009) A transcriptomic analysis of human centromeric and pericentric sequences in normal and tumor cells. Nucleic Acids Res 37 (19):6340-6354. doi:gkp639
    • (2009) Nucleic Acids Res. , vol.37 , Issue.19 , pp. 6340-6354
    • Eymery, A.1
  • 5
    • 2342557977 scopus 로고    scopus 로고
    • A simple method for estimating global DNA methylation using bisulfi te PCR of repetitive DNA elements
    • 10.1093/nar/gnh032/3/e38
    • Yang AS, et al. (2004) A simple method for estimating global DNA methylation using bisulfi te PCR of repetitive DNA elements. Nucleic Acids Res 32 (3):e38. doi: 10.1093/nar/gnh032/3/e38
    • (2004) Nucleic Acids Res. , vol.32 , Issue.3
    • Yang, A.S.1
  • 8
    • 67650067284 scopus 로고    scopus 로고
    • Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer
    • 10.1002/ijc.24384
    • Choi SH, et al. (2009) Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer. Int J Cancer 125 (3):723-729. doi: 10.1002/ijc.24384
    • (2009) Int. J. Cancer , vol.125 , Issue.3 , pp. 723-729
    • Choi, S.H.1
  • 9
    • 85088337230 scopus 로고    scopus 로고
    • Global analysis of DNA methylation and transcription of human repetitive sequences
    • 9284
    • Horard B, et al. (2009) Global analysis of DNA methylation and transcription of human repetitive sequences. Epigenetics 4 (5):339-350. doi:9284
    • (2009) Epigenetics , vol.4 , Issue.5 , pp. 339-350
    • Horard, B.1
  • 10
    • 34250188803 scopus 로고    scopus 로고
    • Genomic patterns of DNA methylation: targets and function of an epigenetic mark
    • DOI 10.1016/j.ceb.2007.04.011, PII S0955067407000634, Nucleus and Gene Expression
    • Weber M, Schubeler D (2007) Genomic patterns of DNA methylation: targets and function of an epigenetic mark. Curr Opin Cell Biol 19 (3):273-280. doi:S0955-0674(07)00063-4 (Pubitemid 46899512)
    • (2007) Current Opinion in Cell Biology , vol.19 , Issue.3 , pp. 273-280
    • Weber, M.1    Schubeler, D.2
  • 11
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • DOI 10.1038/ng1598
    • Weber M, et al. (2005) Chromosome-wide and promoter-specifi c analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat Genet 37 (8): 853-862. doi:ng1598 (Pubitemid 41077111)
    • (2005) Nature Genetics , vol.37 , Issue.8 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3    Oakeley, E.J.4    Haase, M.5    Lam, W.L.6    Schubeler, D.7
  • 12
    • 61449426211 scopus 로고    scopus 로고
    • Methylated DNA immunoprecipitation (MeDIP
    • 10.1007/978-1-59745-522-0-5
    • Mohn F, et al. (2009) Methylated DNA immunoprecipitation (MeDIP). Methods Mol Biol 507:55-64. doi: 10.1007/978-1-59745-522-0-5
    • (2009) Methods Mol. Biol. , vol.507 , pp. 55-64
    • Mohn, F.1
  • 13
    • 73249152285 scopus 로고    scopus 로고
    • Immunoprecipitation of methylated DNA
    • 10.1007/978-1-60327-414-2-16
    • Sorensen AL, Collas P (2009) Immunoprecipitation of methylated DNA. Methods Mol Biol 567:249-262. doi: 10.1007/978-1-60327-414-2-16
    • (2009) Methods Mol. Biol. , vol.567 , pp. 249-262
    • Sorensen, A.L.1    Collas, P.2
  • 14
    • 0038239283 scopus 로고    scopus 로고
    • OligoArray 2.0: Design of oligonucleotide probes for DNA microarrays using a thermodynamic approach
    • DOI 10.1093/nar/gkg426
    • Rouillard JM, Zuker M, Gulari E (2003) OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach. Nucleic Acids Res 31 (12):3057-3062 (Pubitemid 37441764)
    • (2003) Nucleic Acids Research , vol.31 , Issue.12 , pp. 3057-3062
    • Rouillard, J.-M.1    Zuker, M.2    Gulari, E.3
  • 15
    • 0037446948 scopus 로고    scopus 로고
    • HIV reproducibly establishes a latent infection after acute infection of T cells in vitro
    • DOI 10.1093/emboj/cdg188
    • Jordan A, Bisgrove D, Verdin E (2003) HIV reproducibly establishes a latent infection after acute infection of T cells in vitro. EMBO J 22 (8):1868-1877. doi: 10.1093/emboj/cdg188 (Pubitemid 36460143)
    • (2003) EMBO Journal , vol.22 , Issue.8 , pp. 1868-1877
    • Jordan, A.1    Bisgrove, D.2    Verdin, E.3
  • 16
    • 0023664929 scopus 로고
    • Human alpha satellite DNA - Consensus sequence and conserved regions
    • Vissel B, Choo KH (1987) Human alpha satellite DNA - consensus sequence and conserved regions. Nucleic Acids Res 15 (16):6751-6752
    • (1987) Nucleic Acids Res. , vol.15 , Issue.16 , pp. 6751-6752
    • Vissel, B.1    Choo, K.H.2
  • 18
    • 0018392825 scopus 로고
    • Cloning of human satellite III DNA: Different components are on different chromosomes
    • Cooke HJ, Hindley J (1979) Cloning of human satellite III DNA: different components are on different chromosomes. Nucleic Acids Res 6 (10):3177-3197 (Pubitemid 9238470)
    • (1979) Nucleic Acids Research , vol.6 , Issue.10 , pp. 3177-3197
    • Cooke, H.J.1
  • 19
    • 0013462065 scopus 로고
    • A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes
    • Moyzis RK, et al. (1988) A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes. Proc Natl Acad Sci U S A 85 (18):6622-6626
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , Issue.18 , pp. 6622-6626
    • Moyzis, R.K.1
  • 22
    • 37549066863 scopus 로고    scopus 로고
    • Discovery of epigenetically silenced genes by methylated DNA immunoprecipitation in colon cancer cells
    • Jacinto, F.V., et al. (2007) Discovery of epigenetically silenced genes by methylated DNA immunoprecipitation in colon cancer cells. Cancer Res 67(24): p. 11481-6
    • (2007) Cancer Res. , vol.67 , Issue.24 , pp. 11481-6
    • Jacinto, F.V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.