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Volumn 10, Issue , 2012, Pages

MESSA: MEta-Server for protein Sequence Analysis

Author keywords

[No Author keywords available]

Indexed keywords

CANDIDATUS LIBERIBACTER ASIATICUS;

EID: 84866790716     PISSN: None     EISSN: 17417007     Source Type: Journal    
DOI: 10.1186/1741-7007-10-82     Document Type: Article
Times cited : (38)

References (75)
  • 1
    • 34047144858 scopus 로고    scopus 로고
    • A G protein-coupled receptor is a plasma membrane receptor for the plant hormone abscisic acid
    • 10.1126/science.1135882, 17347412
    • Liu X, Yue Y, Li B, Nie Y, Li W, Wu WH, Ma L. A G protein-coupled receptor is a plasma membrane receptor for the plant hormone abscisic acid. Science 2007, 315(5819):1712-1716. 10.1126/science.1135882, 17347412.
    • (2007) Science , vol.315 , Issue.5819 , pp. 1712-1716
    • Liu, X.1    Yue, Y.2    Li, B.3    Nie, Y.4    Li, W.5    Wu, W.H.6    Ma, L.7
  • 2
    • 36049001127 scopus 로고    scopus 로고
    • Comment on 'A G protein coupled receptor is a plasma membrane receptor for the plant hormone abscisic acid'
    • author reply 914.
    • Johnston CA, Temple BR, Chen JG, Gao Y, Moriyama EN, Jones AM, Siderovski DP, Willard FS. Comment on 'A G protein coupled receptor is a plasma membrane receptor for the plant hormone abscisic acid'. Science 2007, 318(5852):914. author reply 914..
    • (2007) Science , vol.318 , Issue.5852 , pp. 914
    • Johnston, C.A.1    Temple, B.R.2    Chen, J.G.3    Gao, Y.4    Moriyama, E.N.5    Jones, A.M.6    Siderovski, D.P.7    Willard, F.S.8
  • 3
    • 36849083006 scopus 로고    scopus 로고
    • Genetic characterization reveals no role for the reported ABA receptor, GCR2, in ABA control of seed germination and early seedling development in Arabidopsis
    • 10.1111/j.1365-313X.2007.03291.x, 17894782
    • Gao Y, Zeng Q, Guo J, Cheng J, Ellis BE, Chen JG. Genetic characterization reveals no role for the reported ABA receptor, GCR2, in ABA control of seed germination and early seedling development in Arabidopsis. Plant J 2007, 52(6):1001-1013. 10.1111/j.1365-313X.2007.03291.x, 17894782.
    • (2007) Plant J , vol.52 , Issue.6 , pp. 1001-1013
    • Gao, Y.1    Zeng, Q.2    Guo, J.3    Cheng, J.4    Ellis, B.E.5    Chen, J.G.6
  • 4
    • 33645972948 scopus 로고    scopus 로고
    • Servers for protein structure prediction
    • 10.1016/j.sbi.2006.03.004, 16546376
    • Fischer D. Servers for protein structure prediction. Curr Opin Struct Biol 2006, 16(2):178-182. 10.1016/j.sbi.2006.03.004, 16546376.
    • (2006) Curr Opin Struct Biol , vol.16 , Issue.2 , pp. 178-182
    • Fischer, D.1
  • 5
    • 80855133462 scopus 로고    scopus 로고
    • CASP9 assessment of free modeling target predictions
    • 3226891, 21997521
    • Kinch L, Yong Shi S, Cong Q, Cheng H, Liao Y, Grishin NV. CASP9 assessment of free modeling target predictions. Proteins 2011, 79(Suppl 10):59-73. 3226891, 21997521.
    • (2011) Proteins , vol.79 , Issue.SUPPL. 10 , pp. 59-73
    • Kinch, L.1    Yong Shi, S.2    Cong, Q.3    Cheng, H.4    Liao, Y.5    Grishin, N.V.6
  • 6
    • 0032420333 scopus 로고    scopus 로고
    • JPred: a consensus secondary structure prediction server
    • 10.1093/bioinformatics/14.10.892, 9927721
    • Cuff JA, Clamp ME, Siddiqui AS, Finlay M, Barton GJ. JPred: a consensus secondary structure prediction server. Bioinformatics 1998, 14(10):892-893. 10.1093/bioinformatics/14.10.892, 9927721.
    • (1998) Bioinformatics , vol.14 , Issue.10 , pp. 892-893
    • Cuff, J.A.1    Clamp, M.E.2    Siddiqui, A.S.3    Finlay, M.4    Barton, G.J.5
  • 7
    • 44349192171 scopus 로고    scopus 로고
    • Prediction of disordered regions in proteins based on the meta approach
    • 10.1093/bioinformatics/btn195, 18426805
    • Ishida T, Kinoshita K. Prediction of disordered regions in proteins based on the meta approach. Bioinformatics 2008, 24(11):1344-1348. 10.1093/bioinformatics/btn195, 18426805.
    • (2008) Bioinformatics , vol.24 , Issue.11 , pp. 1344-1348
    • Ishida, T.1    Kinoshita, K.2
  • 8
    • 70449378220 scopus 로고    scopus 로고
    • MetaTM - a consensus method for transmembrane protein topology prediction
    • 10.1186/1471-2105-10-314, 2761906, 19785723
    • Klammer M, Messina DN, Schmitt T, Sonnhammer EL. MetaTM - a consensus method for transmembrane protein topology prediction. BMC Bioinformatics 2009, 10:314. 10.1186/1471-2105-10-314, 2761906, 19785723.
    • (2009) BMC Bioinformatics , vol.10 , pp. 314
    • Klammer, M.1    Messina, D.N.2    Schmitt, T.3    Sonnhammer, E.L.4
  • 9
    • 34547612652 scopus 로고    scopus 로고
    • Pcons.net: protein structure prediction meta server
    • Web Server
    • Wallner B, Larsson P, Elofsson A. Pcons.net: protein structure prediction meta server. Nucleic Acids Res 2007, (35 Web Server):W369-374.
    • (2007) Nucleic Acids Res , Issue.35
    • Wallner, B.1    Larsson, P.2    Elofsson, A.3
  • 10
    • 0038386050 scopus 로고    scopus 로고
    • 3D-Jury: a simple approach to improve protein structure predictions
    • 10.1093/bioinformatics/btg124, 12761065
    • Ginalski K, Elofsson A, Fischer D, Rychlewski L. 3D-Jury: a simple approach to improve protein structure predictions. Bioinformatics 2003, 19(8):1015-1018. 10.1093/bioinformatics/btg124, 12761065.
    • (2003) Bioinformatics , vol.19 , Issue.8 , pp. 1015-1018
    • Ginalski, K.1    Elofsson, A.2    Fischer, D.3    Rychlewski, L.4
  • 11
    • 84864437522 scopus 로고    scopus 로고
    • CombFunc: predicting protein function using heterogeneous data sources
    • Web Server
    • Wass MN, Barton G, Sternberg MJ. CombFunc: predicting protein function using heterogeneous data sources. Nucleic Acids Res 2012, (40 Web Server):W466-470.
    • (2012) Nucleic Acids Res , Issue.40
    • Wass, M.N.1    Barton, G.2    Sternberg, M.J.3
  • 12
    • 11844292002 scopus 로고    scopus 로고
    • Inference of protein function from protein structure
    • 10.1016/j.str.2004.10.015, 15642267
    • Pal D, Eisenberg D. Inference of protein function from protein structure. Structure 2005, 13(1):121-130. 10.1016/j.str.2004.10.015, 15642267.
    • (2005) Structure , vol.13 , Issue.1 , pp. 121-130
    • Pal, D.1    Eisenberg, D.2
  • 13
    • 0041620432 scopus 로고    scopus 로고
    • The PredictProtein server
    • 10.1093/nar/gkg508, 168915, 12824312
    • Rost B, Liu J. The PredictProtein server. Nucleic Acids Res 2003, 31(13):3300-3304. 10.1093/nar/gkg508, 168915, 12824312.
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3300-3304
    • Rost, B.1    Liu, J.2
  • 14
    • 84862221167 scopus 로고    scopus 로고
    • SMART 7: recent updates to the protein domain annotation resource
    • Database
    • Letunic I, Doerks T, Bork P. SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res 2012, (40 Database):D302-305.
    • (2012) Nucleic Acids Res , Issue.40
    • Letunic, I.1    Doerks, T.2    Bork, P.3
  • 15
    • 0043123216 scopus 로고    scopus 로고
    • GeneSilico protein structure prediction meta-server
    • 10.1093/nar/gkg557, 168964, 12824313
    • Kurowski MA, Bujnicki JM. GeneSilico protein structure prediction meta-server. Nucleic Acids Res 2003, 31(13):3305-3307. 10.1093/nar/gkg557, 168964, 12824313.
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3305-3307
    • Kurowski, M.A.1    Bujnicki, J.M.2
  • 17
    • 84870869042 scopus 로고    scopus 로고
    • An example of MESSA result pages
    • An example of MESSA result pages. http://prodata.swmed.edu/MESSA/results/example.html
  • 18
    • 84860833500 scopus 로고    scopus 로고
    • Reorganizing the protein space at the Universal Protein Resource (UniProt)
    • (Database)
    • Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res 2012, (40(Database)):D71-75.
    • (2012) Nucleic Acids Res , Issue.40
  • 20
    • 74549221383 scopus 로고    scopus 로고
    • Annotation error in public databases: misannotation of molecular function in enzyme superfamilies
    • 10.1371/journal.pcbi.1000605, 2781113, 20011109
    • Schnoes AM, Brown SD, Dodevski I, Babbitt PC. Annotation error in public databases: misannotation of molecular function in enzyme superfamilies. PLoS Comput Biol 2009, 5(12):e1000605. 10.1371/journal.pcbi.1000605, 2781113, 20011109.
    • (2009) PLoS Comput Biol , vol.5 , Issue.12
    • Schnoes, A.M.1    Brown, S.D.2    Dodevski, I.3    Babbitt, P.C.4
  • 22
    • 58349111875 scopus 로고    scopus 로고
    • AmiGO: online access to ontology and annotation data
    • 10.1093/bioinformatics/btn615, 2639003, 19033274
    • Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S. AmiGO: online access to ontology and annotation data. Bioinformatics 2009, 25(2):288-289. 10.1093/bioinformatics/btn615, 2639003, 19033274.
    • (2009) Bioinformatics , vol.25 , Issue.2 , pp. 288-289
    • Carbon, S.1    Ireland, A.2    Mungall, C.J.3    Shu, S.4    Marshall, B.5    Lewis, S.6
  • 23
    • 35348973511 scopus 로고    scopus 로고
    • EzyPred: a top-down approach for predicting enzyme functional classes and subclasses
    • 10.1016/j.bbrc.2007.09.098, 17931599
    • Shen HB, Chou KC. EzyPred: a top-down approach for predicting enzyme functional classes and subclasses. Biochem Biophys Res Commun 2007, 364(1):53-59. 10.1016/j.bbrc.2007.09.098, 17931599.
    • (2007) Biochem Biophys Res Commun , vol.364 , Issue.1 , pp. 53-59
    • Shen, H.B.1    Chou, K.C.2
  • 24
    • 65349170082 scopus 로고    scopus 로고
    • EFICAz2: enzyme function inference by a combined approach enhanced by machine learning
    • 10.1186/1471-2105-10-107, 2670841, 19361344
    • Arakaki AK, Huang Y, Skolnick J. EFICAz2: enzyme function inference by a combined approach enhanced by machine learning. BMC Bioinformatics 2009, 10:107. 10.1186/1471-2105-10-107, 2670841, 19361344.
    • (2009) BMC Bioinformatics , vol.10 , pp. 107
    • Arakaki, A.K.1    Huang, Y.2    Skolnick, J.3
  • 25
    • 13444280436 scopus 로고    scopus 로고
    • EFICAz: a comprehensive approach for accurate genome-scale enzyme function inference
    • 10.1093/nar/gkh956, 535665, 15576349
    • Tian W, Arakaki AK, Skolnick J. EFICAz: a comprehensive approach for accurate genome-scale enzyme function inference. Nucleic Acids Res 2004, 32(21):6226-6239. 10.1093/nar/gkh956, 535665, 15576349.
    • (2004) Nucleic Acids Res , vol.32 , Issue.21 , pp. 6226-6239
    • Tian, W.1    Arakaki, A.K.2    Skolnick, J.3
  • 26
    • 0033963089 scopus 로고    scopus 로고
    • The ENZYME database in 2000
    • 10.1093/nar/28.1.304, 102465, 10592255
    • Bairoch A. The ENZYME database in 2000. Nucleic Acids Res 2000, 28(1):304-305. 10.1093/nar/28.1.304, 102465, 10592255.
    • (2000) Nucleic Acids Res , vol.28 , Issue.1 , pp. 304-305
    • Bairoch, A.1
  • 33
    • 58149194624 scopus 로고    scopus 로고
    • SMART 6: recent updates and new developments
    • Database
    • Letunic I, Doerks T, Bork P. SMART 6: recent updates and new developments. Nucleic Acids Res 2009, (37 Database):D229-232.
    • (2009) Nucleic Acids Res , Issue.37
    • Letunic, I.1    Doerks, T.2    Bork, P.3
  • 34
    • 3242887157 scopus 로고    scopus 로고
    • CD-Search: protein domain annotations on the fly
    • 441592, 15215404, Web Server issue
    • Marchler-Bauer A, Bryant SH. CD-Search: protein domain annotations on the fly. Nucleic Acids Res 2004, 32(Web Server issue):W327-331. 441592, 15215404.
    • (2004) Nucleic Acids Res , vol.32
    • Marchler-Bauer, A.1    Bryant, S.H.2
  • 35
    • 16344373015 scopus 로고    scopus 로고
    • Protein homology detection by HMM-HMM comparison
    • 10.1093/bioinformatics/bti125, 15531603
    • Soding J. Protein homology detection by HMM-HMM comparison. Bioinformatics 2005, 21(7):951-960. 10.1093/bioinformatics/bti125, 15531603.
    • (2005) Bioinformatics , vol.21 , Issue.7 , pp. 951-960
    • Soding, J.1
  • 36
    • 84856489442 scopus 로고    scopus 로고
    • HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
    • Remmert M, Biegert A, Hauser A, Soding J. HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat Methods 2012, 9(2):173-175.
    • (2012) Nat Methods , vol.9 , Issue.2 , pp. 173-175
    • Remmert, M.1    Biegert, A.2    Hauser, A.3    Soding, J.4
  • 37
    • 2442676589 scopus 로고    scopus 로고
    • Automated structure prediction of weakly homologous proteins on a genomic scale
    • 10.1073/pnas.0305695101, 419651, 15126668
    • Zhang Y, Skolnick J. Automated structure prediction of weakly homologous proteins on a genomic scale. Proc Natl Acad Sci USA 2004, 101(20):7594-7599. 10.1073/pnas.0305695101, 419651, 15126668.
    • (2004) Proc Natl Acad Sci USA , vol.101 , Issue.20 , pp. 7594-7599
    • Zhang, Y.1    Skolnick, J.2
  • 39
    • 0028961335 scopus 로고
    • SCOP: a structural classification of proteins database for the investigation of sequences and structures
    • Murzin AG, Brenner SE, Hubbard T, Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995, 247(4):536-540.
    • (1995) J Mol Biol , vol.247 , Issue.4 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 40
    • 84870435682 scopus 로고    scopus 로고
    • Jmol: an open-source Java viewer for chemical structures in 3D
    • Jmol: an open-source Java viewer for chemical structures in 3D. http://www.jmol.org/
  • 41
    • 84870913097 scopus 로고    scopus 로고
    • Apply for MODELLER key
    • Apply for MODELLER key. http://salilab.org/modeller/registration.html
  • 43
    • 49649114605 scopus 로고    scopus 로고
    • Protein structure modeling with MODELLER
    • 10.1007/978-1-60327-058-8_8, 18542861
    • Eswar N, Eramian D, Webb B, Shen MY, Sali A. Protein structure modeling with MODELLER. Methods Mol Biol 2008, 426:145-159. 10.1007/978-1-60327-058-8_8, 18542861.
    • (2008) Methods Mol Biol , vol.426 , pp. 145-159
    • Eswar, N.1    Eramian, D.2    Webb, B.3    Shen, M.Y.4    Sali, A.5
  • 44
    • 84870898089 scopus 로고    scopus 로고
    • Predictive analysis of the Candidatus Liberibacter asiaticus proteome
    • Predictive analysis of the Candidatus Liberibacter asiaticus proteome. http://prodata.swmed.edu/liberibacter_asiaticus/
  • 45
    • 50049087513 scopus 로고    scopus 로고
    • Sec- and Tat-mediated protein secretion across the bacterial cytoplasmic membrane--distinct translocases and mechanisms
    • 10.1016/j.bbamem.2007.07.015, 17935691
    • Natale P, Bruser T, Driessen AJ. Sec- and Tat-mediated protein secretion across the bacterial cytoplasmic membrane--distinct translocases and mechanisms. Biochim Biophys Acta 2008, 1778(9):1735-1756. 10.1016/j.bbamem.2007.07.015, 17935691.
    • (2008) Biochim Biophys Acta , vol.1778 , Issue.9 , pp. 1735-1756
    • Natale, P.1    Bruser, T.2    Driessen, A.J.3
  • 46
    • 84870863433 scopus 로고    scopus 로고
    • The MESSA result page for the hypothetical ribosomal protein L35 from Candidatus Liberibacter asiaticus
    • The MESSA result page for the hypothetical ribosomal protein L35 from Candidatus Liberibacter asiaticus. http://prodata.swmed.edu/liberibacter_asiaticus/254780319.html
  • 47
    • 37649008220 scopus 로고    scopus 로고
    • Cryo-EM study of the spinach chloroplast ribosome reveals the structural and functional roles of plastid-specific ribosomal proteins
    • 10.1073/pnas.0709856104, 2148287, 18042701
    • Sharma MR, Wilson DN, Datta PP, Barat C, Schluenzen F, Fucini P, Agrawal RK. Cryo-EM study of the spinach chloroplast ribosome reveals the structural and functional roles of plastid-specific ribosomal proteins. Proc Natl Acad Sci USA 2007, 104(49):19315-19320. 10.1073/pnas.0709856104, 2148287, 18042701.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.49 , pp. 19315-19320
    • Sharma, M.R.1    Wilson, D.N.2    Datta, P.P.3    Barat, C.4    Schluenzen, F.5    Fucini, P.6    Agrawal, R.K.7
  • 49
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • 10.1006/jmbi.1999.3091, 10493868
    • Jones DT. Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 1999, 292(2):195-202. 10.1006/jmbi.1999.3091, 10493868.
    • (1999) J Mol Biol , vol.292 , Issue.2 , pp. 195-202
    • Jones, D.T.1
  • 50
    • 0036568279 scopus 로고    scopus 로고
    • Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles
    • 10.1002/prot.10082, 11933069
    • Pollastri G, Przybylski D, Rost B, Baldi P. Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins 2002, 47(2):228-235. 10.1002/prot.10082, 11933069.
    • (2002) Proteins , vol.47 , Issue.2 , pp. 228-235
    • Pollastri, G.1    Przybylski, D.2    Rost, B.3    Baldi, P.4
  • 51
    • 0242458482 scopus 로고    scopus 로고
    • Protein disorder prediction: implications for structural proteomics
    • 10.1016/j.str.2003.10.002, 14604535
    • Linding R, Jensen LJ, Diella F, Bork P, Gibson TJ, Russell RB. Protein disorder prediction: implications for structural proteomics. Structure 2003, 11(11):1453-1459. 10.1016/j.str.2003.10.002, 14604535.
    • (2003) Structure , vol.11 , Issue.11 , pp. 1453-1459
    • Linding, R.1    Jensen, L.J.2    Diella, F.3    Bork, P.4    Gibson, T.J.5    Russell, R.B.6
  • 52
    • 27944488680 scopus 로고    scopus 로고
    • Accurate prediction of protein disordered regions by mining protein structure data
    • Cheng J, Sweredoski M, Baldi P. Accurate prediction of protein disordered regions by mining protein structure data. Data Mining and Knowledge Discovery 2005, 11(3):213-222.
    • (2005) Data Mining and Knowledge Discovery , vol.11 , Issue.3 , pp. 213-222
    • Cheng, J.1    Sweredoski, M.2    Baldi, P.3
  • 53
    • 1542358787 scopus 로고    scopus 로고
    • Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
    • 10.1016/j.jmb.2004.02.002, 15019783
    • Ward JJ, Sodhi JS, McGuffin LJ, Buxton BF, Jones DT. Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J Mol Biol 2004, 337(3):635-645. 10.1016/j.jmb.2004.02.002, 15019783.
    • (2004) J Mol Biol , vol.337 , Issue.3 , pp. 635-645
    • Ward, J.J.1    Sodhi, J.S.2    McGuffin, L.J.3    Buxton, B.F.4    Jones, D.T.5
  • 54
    • 79956200060 scopus 로고    scopus 로고
    • The Ising model for prediction of disordered residues from protein sequence alone
    • 10.1088/1478-3975/8/3/035004, 21572175
    • Lobanov MY, Galzitskaya OV. The Ising model for prediction of disordered residues from protein sequence alone. Phys Biol 2011, 8(3):035004. 10.1088/1478-3975/8/3/035004, 21572175.
    • (2011) Phys Biol , vol.8 , Issue.3 , pp. 035004
    • Lobanov, M.Y.1    Galzitskaya, O.V.2
  • 55
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
    • 10.1006/jmbi.2000.4315, 11152613
    • Krogh A, Larsson B, von Heijne G, Sonnhammer EL. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 2001, 305(3):567-580. 10.1006/jmbi.2000.4315, 11152613.
    • (2001) J Mol Biol , vol.305 , Issue.3 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.4
  • 56
    • 0026716643 scopus 로고
    • Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule
    • 10.1016/0022-2836(92)90934-C, 1593632
    • von Heijne G. Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule. J Mol Biol 1992, 225(2):487-494. 10.1016/0022-2836(92)90934-C, 1593632.
    • (1992) J Mol Biol , vol.225 , Issue.2 , pp. 487-494
    • von Heijne, G.1
  • 57
    • 0032561132 scopus 로고    scopus 로고
    • Principles governing amino acid composition of integral membrane proteins: application to topology prediction
    • 10.1006/jmbi.1998.2107, 9769220
    • Tusnady GE, Simon I. Principles governing amino acid composition of integral membrane proteins: application to topology prediction. J Mol Biol 1998, 283(2):489-506. 10.1006/jmbi.1998.2107, 9769220.
    • (1998) J Mol Biol , vol.283 , Issue.2 , pp. 489-506
    • Tusnady, G.E.1    Simon, I.2
  • 58
    • 34047151404 scopus 로고    scopus 로고
    • Improving the accuracy of transmembrane protein topology prediction using evolutionary information
    • 10.1093/bioinformatics/btl677, 17237066
    • Jones DT. Improving the accuracy of transmembrane protein topology prediction using evolutionary information. Bioinformatics 2007, 23(5):538-544. 10.1093/bioinformatics/btl677, 17237066.
    • (2007) Bioinformatics , vol.23 , Issue.5 , pp. 538-544
    • Jones, D.T.1
  • 59
    • 67649472570 scopus 로고    scopus 로고
    • Transmembrane protein topology prediction using support vector machines
    • 10.1186/1471-2105-10-159, 2700806, 19470175
    • Nugent T, Jones DT. Transmembrane protein topology prediction using support vector machines. BMC Bioinformatics 2009, 10:159. 10.1186/1471-2105-10-159, 2700806, 19470175.
    • (2009) BMC Bioinformatics , vol.10 , pp. 159
    • Nugent, T.1    Jones, D.T.2
  • 60
    • 2142657817 scopus 로고    scopus 로고
    • A combined transmembrane topology and signal peptide prediction method
    • 10.1016/j.jmb.2004.03.016, 15111065
    • Kall L, Krogh A, Sonnhammer EL. A combined transmembrane topology and signal peptide prediction method. J Mol Biol 2004, 338(5):1027-1036. 10.1016/j.jmb.2004.03.016, 15111065.
    • (2004) J Mol Biol , vol.338 , Issue.5 , pp. 1027-1036
    • Kall, L.1    Krogh, A.2    Sonnhammer, E.L.3
  • 61
    • 3042521098 scopus 로고    scopus 로고
    • Improved prediction of signal peptides: SignalP 3.0
    • 10.1016/j.jmb.2004.05.028, 15223320
    • Bendtsen JD, Nielsen H, von Heijne G, Brunak S. Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 2004, 340(4):783-795. 10.1016/j.jmb.2004.05.028, 15223320.
    • (2004) J Mol Biol , vol.340 , Issue.4 , pp. 783-795
    • Bendtsen, J.D.1    Nielsen, H.2    von Heijne, G.3    Brunak, S.4
  • 62
    • 0028501914 scopus 로고
    • Non-globular domains in protein sequences: automated segmentation using complexity measures
    • 10.1016/0097-8485(94)85023-2, 7952898
    • Wootton JC. Non-globular domains in protein sequences: automated segmentation using complexity measures. Comput Chem 1994, 18(3):269-285. 10.1016/0097-8485(94)85023-2, 7952898.
    • (1994) Comput Chem , vol.18 , Issue.3 , pp. 269-285
    • Wootton, J.C.1
  • 63
    • 0026356891 scopus 로고
    • Predicting coiled coils from protein sequences
    • 10.1126/science.252.5009.1162, 17797907
    • Lupas A, Van Dyke M, Stock J. Predicting coiled coils from protein sequences. Science 1991, 252(5009):1162-1164. 10.1126/science.252.5009.1162, 17797907.
    • (1991) Science , vol.252 , Issue.5009 , pp. 1162-1164
    • Lupas, A.1    Van Dyke, M.2    Stock, J.3
  • 64
    • 0034843597 scopus 로고    scopus 로고
    • AL2CO: calculation of positional conservation in a protein sequence alignment
    • 10.1093/bioinformatics/17.8.700, 11524371
    • Pei J, Grishin NV. AL2CO: calculation of positional conservation in a protein sequence alignment. Bioinformatics 2001, 17(8):700-712. 10.1093/bioinformatics/17.8.700, 11524371.
    • (2001) Bioinformatics , vol.17 , Issue.8 , pp. 700-712
    • Pei, J.1    Grishin, N.V.2
  • 65
    • 0242299187 scopus 로고    scopus 로고
    • Predictions without templates: new folds, secondary structure, and contacts in CASP5
    • Aloy P, Stark A, Hadley C, Russell RB. Predictions without templates: new folds, secondary structure, and contacts in CASP5. Proteins 2003, 53(Suppl 6):436-456.
    • (2003) Proteins , vol.53 , Issue.SUPPL. 6 , pp. 436-456
    • Aloy, P.1    Stark, A.2    Hadley, C.3    Russell, R.B.4
  • 66
    • 38849135019 scopus 로고    scopus 로고
    • Choosing BLAST options for better detection of orthologs as reciprocal best hits
    • 10.1093/bioinformatics/btm585, 18042555
    • Moreno-Hagelsieb G, Latimer K. Choosing BLAST options for better detection of orthologs as reciprocal best hits. Bioinformatics 2008, 24(3):319-324. 10.1093/bioinformatics/btm585, 18042555.
    • (2008) Bioinformatics , vol.24 , Issue.3 , pp. 319-324
    • Moreno-Hagelsieb, G.1    Latimer, K.2
  • 67
    • 79954579960 scopus 로고    scopus 로고
    • Evaluating ortholog prediction algorithms in a yeast model clade
    • 10.1371/journal.pone.0018755, 3076445, 21533202
    • Salichos L, Rokas A. Evaluating ortholog prediction algorithms in a yeast model clade. PLoS One 2011, 6(4):e18755. 10.1371/journal.pone.0018755, 3076445, 21533202.
    • (2011) PLoS One , vol.6 , Issue.4
    • Salichos, L.1    Rokas, A.2
  • 69
    • 0035875343 scopus 로고    scopus 로고
    • GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    • 10.1093/nar/29.12.2607, 55746, 11410670
    • Besemer J, Lomsadze A, Borodovsky M. GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res 2001, 29(12):2607-2618. 10.1093/nar/29.12.2607, 55746, 11410670.
    • (2001) Nucleic Acids Res , vol.29 , Issue.12 , pp. 2607-2618
    • Besemer, J.1    Lomsadze, A.2    Borodovsky, M.3
  • 70
    • 84870908087 scopus 로고    scopus 로고
    • Data for Candidatus Liberibacter asiaticus from GeneBank database
    • Data for Candidatus Liberibacter asiaticus from GeneBank database. ftp://ftp.ncbi.nih.gov/genbank/genomes/Bacteria/Candidatus_Liberibacter_asiaticus_psy62_uid29835
  • 73
    • 84870889468 scopus 로고    scopus 로고
    • Data for Candidatus Liberibacter asiaticus proteins in NCBI Nucleotide database
    • Data for Candidatus Liberibacter asiaticus proteins in NCBI Nucleotide database. http://www.ncbi.nlm.nih.gov/nuccore/CP001677
  • 74
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • 10.1093/nar/28.1.27, 102409, 10592173
    • Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000, 28(1):27-30. 10.1093/nar/28.1.27, 102409, 10592173.
    • (2000) Nucleic Acids Res , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 75
    • 84870926059 scopus 로고    scopus 로고
    • Data for Candidatus Liberibacter asiaticus proteins in the KEGG database
    • Data for Candidatus Liberibacter asiaticus proteins in the KEGG database. http://www.genome.jp/kegg-bin/show_genomemap_top?org_id=las


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.