-
1
-
-
0026716833
-
Jury returns on structure prediction
-
Rost, B. and Sander, C. (1992) Jury returns on structure prediction. Nature, 360, 540.
-
(1992)
Nature
, vol.360
, pp. 540
-
-
Rost, B.1
Sander, C.2
-
2
-
-
0027274036
-
Sequence analysis by electronic mail server
-
Henikoff, S. (1993) Sequence analysis by electronic mail server. Trends Biochem. Sci., 18, 267-268.
-
(1993)
Trends Biochem. Sci.
, vol.18
, pp. 267-268
-
-
Henikoff, S.1
-
3
-
-
0032962457
-
Twilight zone of protein sequence alignments
-
Rost, B. (1999) Twilight zone of protein sequence alignments. Protein Eng, 12, 85-94.
-
(1999)
Protein Eng
, vol.12
, pp. 85-94
-
-
Rost, B.1
-
4
-
-
0029889221
-
Local alignment statistics
-
Altschul, S.F. and Gish, W. (1996) Local alignment statistics. Methods Enzymol., 266, 460-480.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 460-480
-
-
Altschul, S.F.1
Gish, W.2
-
5
-
-
0030801002
-
Gapped BLAST and PSI-Blast: A new generation of protein database search programs
-
Altschul, S., Madden, T., Shaffer, A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D. (1997) Gapped BLAST and PSI-Blast: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Shaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
6
-
-
0026030641
-
Database of homology-derived structures and the structural meaning of sequence alignment
-
Sander, C. and Schneider, R. (1991) Database of homology-derived structures and the structural meaning of sequence alignment. Proteins, 9, 56-68.
-
(1991)
Proteins
, vol.9
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
7
-
-
0036467068
-
Alignments grow, secondary structure prediction improves
-
Przybylski ,D. and Rost, B. (2002) Alignments grow, secondary structure prediction improves. Proteins, 46, 195-205.
-
(2002)
Proteins
, vol.46
, pp. 195-205
-
-
Przybylski, D.1
Rost, B.2
-
8
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones, D.T. (1999) Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol., 292, 195-202.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
9
-
-
0032919372
-
Recent improvements of the ProDom database of protein domain families
-
Corpet, F., Gouzy, J. and Kahn, D. (1999) Recent improvements of the ProDom database of protein domain families. Nucleic Acids Res., 27, 263-267.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 263-267
-
-
Corpet, F.1
Gouzy, J.2
Kahn, D.3
-
10
-
-
0032944238
-
The PROSITE database, its status in 1999
-
Hofmann, K., Bucher, P., Falquet, L. and Bairoch, A. (1999) The PROSITE database, its status in 1999. Nucleic Acids Res., 27, 215-219.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 215-219
-
-
Hofmann, K.1
Bucher, P.2
Falquet, L.3
Bairoch, A.4
-
11
-
-
0029186289
-
TOPITS: Threading one-dimensional predictions into three-dimensional structures
-
Rawlings,C., Clark,D., Altman,R., Hunter,L., Lengauer,T. and Wodak,S. (eds), AAAI Press, Menlo Park, CA
-
Rost ,B. (1995) TOPITS: Threading one-dimensional predictions into three-dimensional structures. In Rawlings,C., Clark,D., Altman,R., Hunter,L., Lengauer,T. and Wodak,S. (eds), Third International Conference on Intelligent Systems for Molecular Biology. AAAI Press, Menlo Park, CA, pp. 314-321.
-
(1995)
Third International Conference on Intelligent Systems for Molecular Biology
, pp. 314-321
-
-
Rost, B.1
-
12
-
-
0029889988
-
PHD: Predicting one-dimensional protein structure by profile based neural networks
-
Rost, B. (1996) PHD: predicting one-dimensional protein structure by profile based neural networks. Methods Enzymol., 266, 525-539.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 525-539
-
-
Rost, B.1
-
13
-
-
0035782925
-
Protein secondary structure prediction continues to rise
-
Rost, B. (2001) Protein secondary structure prediction continues to rise. J. Struct. Biol., 134, 204-218.
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 204-218
-
-
Rost, B.1
-
14
-
-
0026356891
-
Predicting coiled coils from protein sequences
-
Lupas, A., Van Dyke M. and Stock, J. (1991) Predicting coiled coils from protein sequences. Science, 252, 1162-1164.
-
(1991)
Science
, vol.252
, pp. 1162-1164
-
-
Lupas, A.1
Van Dyke, M.2
Stock, J.3
-
15
-
-
0033566578
-
Role of evolutionary information in predicting the disulfide-bonding state of cysteine in proteins
-
Fariselli, P., Riccobelli P. and Casadio, R. (1999) Role of evolutionary information in predicting the disulfide-bonding state of cysteine in proteins. Proteins, 36, 340-346.
-
(1999)
Proteins
, vol.36
, pp. 340-346
-
-
Fariselli, P.1
Riccobelli, P.2
Casadio, R.3
-
16
-
-
0032822088
-
Predicting allosteric switches in myosins
-
Kirshenbaum, K., Young, M. and Highsmith, S. (1999) Predicting allosteric switches in myosins. Protein Sci., 8, 1806-1815.
-
(1999)
Protein Sci.
, vol.8
, pp. 1806-1815
-
-
Kirshenbaum, K.1
Young, M.2
Highsmith, S.3
-
17
-
-
0032877492
-
Predicting conformational switches in proteins
-
Young, M., Kirshenbaum, K., Dill, K.A. and Highsmith, S. (1999) Predicting conformational switches in proteins. Protein Sci., 8, 1752-1764.
-
(1999)
Protein Sci.
, vol.8
, pp. 1752-1764
-
-
Young, M.1
Kirshenbaum, K.2
Dill, K.A.3
Highsmith, S.4
-
18
-
-
0029901640
-
Analysis of compositionally biased regions in sequence databases
-
Wootton, J.C. and Federhen, S. (1996) Analysis of compositionally biased regions in sequence databases. Methods Enzymol., 266, 554-571.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 554-571
-
-
Wootton, J.C.1
Federhen, S.2
-
19
-
-
0036968309
-
Loopy proteins appear conserved in evolution
-
Liu, J., Tan, H. and Rost, B. (2002) Loopy proteins appear conserved in evolution. J. Mol. Biol., 322, 53-64.
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 53-64
-
-
Liu, J.1
Tan, H.2
Rost, B.3
-
20
-
-
0029790856
-
Pitfalls of protein sequence analysis
-
Rost, B. and Valencia, A. (1996) Pitfalls of protein sequence analysis. Curr. Opin. Biotechnol., 7, 457-461.
-
(1996)
Curr. Opin. Biotechnol.
, vol.7
, pp. 457-461
-
-
Rost, B.1
Valencia, A.2
-
21
-
-
0036308741
-
Enzyme function less conserved than anticipated
-
Rost B. (2002) Enzyme function less conserved than anticipated. J. Mol. Biol., 318, 595-608.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 595-608
-
-
Rost, B.1
-
22
-
-
0036891705
-
Sequence conserved for sub-cellular localization
-
Nair, R. and Rost, B. (2002) Sequence conserved for sub-cellular localization. Protein Sci., 11, 2836-2847.
-
(2002)
Protein Sci.
, vol.11
, pp. 2836-2847
-
-
Nair, R.1
Rost, B.2
-
23
-
-
0035424599
-
Intrinsic errors in genome annotation
-
Devos, D. and Valencia, A. (2001) Intrinsic errors in genome annotation. Trends Genet., 17, 429-431.
-
(2001)
Trends Genet.
, vol.17
, pp. 429-431
-
-
Devos, D.1
Valencia, A.2
-
24
-
-
0032919370
-
SMART: Identification and, annotation of domains from signalling and extracellular protein sequences
-
Ponting, C.P., Schultz, J., Milpetz, F. and Bork, P. (1999) SMART: identification and annotation of domains from signalling and extracellular protein sequences. Nucleic Acids Res., 27, 229-232.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 229-232
-
-
Ponting, C.P.1
Schultz, J.2
Milpetz, F.3
Bork, P.4
-
25
-
-
0037305939
-
Domains, motifs, and clusters in the protein universe
-
Liu, J. and Rost, B. (2003) Domains, motifs, and clusters in the protein universe. Curr. Opin. Chem. Biol., 7, 5-11.
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 5-11
-
-
Liu, J.1
Rost, B.2
-
26
-
-
0043123211
-
EVA: Evaluation of protein structure prediction servers
-
Koh, I., Eyrich, V.A., Marti-Renom, M.A., Przybylski, D., Madhusudhan, M.S., Narayanan, E., Graña, O., Valencia, A., Sali, A. and Rost, B. (2003) EVA: evaluation of protein structure prediction servers. Nucleic Acids Res., 31, 3311-3315.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3311-3315
-
-
Koh, I.1
Eyrich, V.A.2
Marti-Renom, M.A.3
Przybylski, D.4
Madhusudhan, M.S.5
Narayanan, E.6
Graña, O.7
Valencia, A.8
Sali, A.9
Rost, B.10
-
27
-
-
0036893269
-
Transmembrane helix predictions revisited
-
Chen, C.P., Kernytsky, A. and Rost, B. (2002) Transmembrane helix predictions revisited. Protein Sci., 11, 2774-2791.
-
(2002)
Protein Sci.
, vol.11
, pp. 2774-2791
-
-
Chen, C.P.1
Kernytsky, A.2
Rost, B.3
-
28
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch, A. and Apweiler, R. (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res., 28, 45-48.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
29
-
-
0033954256
-
The protein data bank
-
Berman, H.M., Westbrook, J., Feng, Z., Gillliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N. and Bourne, P.E. (2000) The protein data bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gillliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
30
-
-
0031577260
-
Protein fold recognition by prediction-based threading
-
Rost, B., Schneider R. and Sander, C. (1997) Protein fold recognition by prediction-based threading. J. Mol. Biol., 270, 471-480.
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 471-480
-
-
Rost, B.1
Schneider, R.2
Sander, C.3
-
31
-
-
0003047663
-
Fitting 1-D predictions into 3-D structures
-
Bohr,H. and Brunak,S. (eds), CRC Press, Boca Raton, Florida
-
Rost,B. (1995) Fitting 1-D predictions into 3-D structures. In Bohr,H. and Brunak,S. (eds), Protein Folds: A Distance Based Approach. CRC Press, Boca Raton, Florida, pp. 132-151.
-
(1995)
Protein Folds: A Distance Based Approach
, pp. 132-151
-
-
Rost, B.1
-
32
-
-
0033957841
-
ProDom and ProDom-CG: Tools for protein domain analysis and whole genome comparisons
-
Corpet,F., Servant,F., Gouzy,J. and Kahn,D. (2000) ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons. Nucleic Acids Res., 28, 267-269.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 267-269
-
-
Corpet, F.1
Servant, F.2
Gouzy, J.3
Kahn, D.4
-
33
-
-
0041620131
-
NORSp: Predictions of long regions without regular secondary structure
-
Liu,J. and Rost,B. (2003) NORSp: predictions of long regions without regular secondary structure. Nucleic Acids Res., 31, 3833-3835.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3833-3835
-
-
Liu, J.1
Rost, B.2
-
34
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
Rost,B. and Sander,C. (1993) Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol., 232, 584-599.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
35
-
-
0028300741
-
Combining evolutionary information and neural networks to predict protein secondary structure
-
Rost,B. and Sander,C. (1994) Combining evolutionary information and neural networks to predict protein secondary structure. Proteins, 19, 55-72.
-
(1994)
Proteins
, vol.19
, pp. 55-72
-
-
Rost, B.1
Sander, C.2
-
36
-
-
0028109886
-
Conservation and prediction of solvent accessibility in protein families
-
Rost,B. and Sander,C. (1994) Conservation and prediction of solvent accessibility in protein families. Proteins, 20, 216-226.
-
(1994)
Proteins
, vol.20
, pp. 216-226
-
-
Rost, B.1
Sander, C.2
-
37
-
-
0028902788
-
Prediction of helical transmembrane segments at 95% accuracy
-
Rost,B., Casadio,R., Fariselli,P. and Sander,C. (1995) Prediction of helical transmembrane segments at 95% accuracy. Protein Sci., 4, 521-533.
-
(1995)
Protein Sci.
, vol.4
, pp. 521-533
-
-
Rost, B.1
Casadio, R.2
Fariselli, P.3
Sander, C.4
-
38
-
-
0030038634
-
Topology prediction for helical transmembrane proteins at 86% accuracy
-
Rost,B., Casadio,R. and Fariselli,P. (1996) Topology prediction for helical transmembrane proteins at 86% accuracy. Protein Sci., 5, 1704-1718.
-
(1996)
Protein Sci.
, vol.5
, pp. 1704-1718
-
-
Rost, B.1
Casadio, R.2
Fariselli, P.3
-
39
-
-
0030004228
-
Prediction and analysis of coiled-coil structures
-
Lupas,A. (1996) Prediction and analysis of coiled-coil structures. Methods Enzymol., 266, 513-525.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 513-525
-
-
Lupas, A.1
-
40
-
-
0034331073
-
Finding nuclear localisation signals
-
Cokol,M., Nair,R. and Rost,B. (2000) Finding nuclear localisation signals. EMBO Reports, 1, 411-415.
-
(2000)
EMBO Reports
, vol.1
, pp. 411-415
-
-
Cokol, M.1
Nair, R.2
Rost, B.3
-
41
-
-
0037249644
-
NLSdb: Database of nuclear localization signals
-
Nair,R., Carter,P. and Rost,B. (2003) NLSdb: database of nuclear localization signals. Nucleic Acids Res., 31, 397-399.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 397-399
-
-
Nair, R.1
Carter, P.2
Rost, B.3
-
42
-
-
0031856336
-
MView: A web compatible database search or multiple alignment viewer
-
Brown,N., Leroy,C. and Sander,C. (1998) MView: a web compatible database search or multiple alignment viewer. Bioinformatics, 14, 380-381.
-
(1998)
Bioinformatics
, vol.14
, pp. 380-381
-
-
Brown, N.1
Leroy, C.2
Sander, C.3
-
43
-
-
0032961270
-
ESPript: Multiple sequence alignments in PostScript
-
Gouet,P., Courcelle,E., Stuart,D.I. and Metoz,F. (1999) ESPript: multiple sequence alignments in PostScript. Bioinformatics, 15, 305-308.
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
|