메뉴 건너뛰기




Volumn 35, Issue SUPPL.2, 2007, Pages

Pcons.net: Protein structure prediction meta server

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 34547612652     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm319     Document Type: Article
Times cited : (52)

References (33)
  • 1
    • 0034780030 scopus 로고    scopus 로고
    • Pcons: A neural-network-based consensus predictor that improves fold recognition
    • Lundstrom, J., Rychlewski, L., Bujnicki, J. and Elofsson, A. (2001) Pcons: a neural-network-based consensus predictor that improves fold recognition. Protein Sci., 10, 2354-2362.
    • (2001) Protein Sci. , vol.10 , pp. 2354-2362
    • Lundstrom, J.1    Rychlewski, L.2    Bujnicki, J.3    Elofsson, A.4
  • 2
    • 0242299169 scopus 로고    scopus 로고
    • Automatic consensus-based fold recognition using Pcons, ProQ, and Pmodeller
    • Wallner, B., Fang, H. and Elofsson, A. (2003) Automatic consensus-based fold recognition using Pcons, ProQ, and Pmodeller. Proteins, 53(Suppl. 6), 534-541.
    • (2003) Proteins , vol.53 , Issue.SUPPL. 6 , pp. 534-541
    • Wallner, B.1    Fang, H.2    Elofsson, A.3
  • 3
    • 0242267517 scopus 로고    scopus 로고
    • Critical assessment of methods of protein structure prediction (CASP)-round v
    • Moult, J., Fidelis, K., Zemla, A. and Hubbard, T. (2003) Critical assessment of methods of protein structure prediction (CASP)-round V. Proteins, 53(Suppl. 6), 334-339.
    • (2003) Proteins , vol.53 , Issue.SUPPL. 6 , pp. 334-339
    • Moult, J.1    Fidelis, K.2    Zemla, A.3    Hubbard, T.4
  • 4
    • 30344475200 scopus 로고    scopus 로고
    • Progress over the first decade of CASP experiments
    • Kryshtafovych, A., Venclovas, C., Fidelis, K. and Moult, J. (2005) Progress over the first decade of CASP experiments. Proteins, 61(Suppl. 7), 225-236.
    • (2005) Proteins , vol.61 , Issue.SUPPL. 7 , pp. 225-236
    • Kryshtafovych, A.1    Venclovas, C.2    Fidelis, K.3    Moult, J.4
  • 5
    • 84862562985 scopus 로고    scopus 로고
    • Assessment of global and local quality model in casp7 using pcons
    • Wallner, B. and E. Elofsson, A. (2007) Assessment of global and local quality model in casp7 using pcons. Manuscript in preparation.
    • (2007) Manuscript in Preparation
    • Wallner, B.1    Elofsson A, E.2
  • 6
    • 0030925920 scopus 로고    scopus 로고
    • Pfam: A comprehensive database of protein domain families based on seed alignments
    • Sonnhammer, E., Eddy, S. and Durbin, R. (1997) Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins, 28, 405-420.
    • (1997) Proteins , vol.28 , pp. 405-420
    • Sonnhammer, E.1    Eddy, S.2    Durbin, R.3
  • 10
    • 0035812694 scopus 로고    scopus 로고
    • Protein structure prediction and structural genomics
    • Baker D. and Sali, A.(2001) Protein structure prediction and structural genomics. Science 294; 93-96.
    • (2001) Science , vol.294 , pp. 93-96
    • Baker, D.1    Sali, A.2
  • 11
    • 17744387920 scopus 로고    scopus 로고
    • All are not equal: A benchmark of different homology modeling programs
    • Wallner, B. and Elofsson, A. (2005) All are not equal: a benchmark of different homology modeling programs. Protein Sci., 14, 1315-1327.
    • (2005) Protein Sci. , vol.14 , pp. 1315-1327
    • Wallner, B.1    Elofsson, A.2
  • 12
    • 0037406141 scopus 로고    scopus 로고
    • Can correct protein models be identified?
    • Wallner, B. and Elofsson, A. (2003) Can correct protein models be identified? Protein Sci., 12, 1073-1086.
    • (2003) Protein Sci. , vol.12 , pp. 1073-1086
    • Wallner, B.1    Elofsson, A.2
  • 13
    • 33645504195 scopus 로고    scopus 로고
    • Identification of correct regions in protein models using structural, alignment, and consensus information
    • Wallner, B. and Elofsson, A. (2006) Identification of correct regions in protein models using structural, alignment, and consensus information. Protein Sci., 15, 900-913
    • (2006) Protein Sci. , vol.15 , pp. 900-913
    • Wallner, B.1    Elofsson, A.2
  • 17
    • 0029619259 scopus 로고
    • Knowledge-based protein secondary structure assignment
    • Frishman, D. and Argos, P. (1995) Knowledge-based protein secondary structure assignment. Proteins, 23, 566-579.
    • (1995) Proteins , vol.23 , pp. 566-579
    • Frishman, D.1    Argos, P.2
  • 18
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • Jones, D. (1999) Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol., 292, 195-202.
    • (1999) J. Mol. Biol. , vol.292 , pp. 195-202
    • Jones, D.1
  • 19
    • 0026754015 scopus 로고
    • Accurate modeling of protein conformation by automatic segment matching
    • Levitt, M. (1992) Accurate modeling of protein conformation by automatic segment matching. J. Mol. Biol., 226, 507-533.
    • (1992) J. Mol. Biol. , vol.226 , pp. 507-533
    • Levitt, M.1
  • 20
    • 0022701772 scopus 로고
    • Using known substructures in protein model building and crystallography
    • Jones, T. A. and Thirup, S. (1986) Using known substructures in protein model building and crystallography. EMBO J., 5, 819-822.
    • (1986) EMBO J. , vol.5 , pp. 819-822
    • Jones, T.A.1    Thirup, S.2
  • 21
    • 0021104775 scopus 로고
    • Molecular dynamics of native protein. i. computer simulation of trajectories
    • Levitt, M. (1983) Molecular dynamics of native protein. i. computer simulation of trajectories. J. Mol. Biol., 168, 595-617.
    • (1983) J. Mol. Biol. , vol.168 , pp. 595-617
    • Levitt, M.1
  • 23
    • 23144463912 scopus 로고    scopus 로고
    • FFAS03: A server for profile-profile sequence alignments
    • (Web Server issue
    • Jaroszewski, L., Rychlewski, L., Li, Z., Li, W. and Godzik, A. (2005) FFAS03: a server for profile-profile sequence alignments. Nucleic Acids Res., 33(Web Server issue), W284-W288.
    • (2005) Nucleic Acids Res. , vol.33
    • Jaroszewski, L.1    Rychlewski, L.2    Li, Z.3    Li, W.4    Godzik, A.5
  • 26
    • 0242362161 scopus 로고    scopus 로고
    • Combining local-structure, fold-recognition, and new fold methods for protein structure prediction
    • Karplus, K., Karchin, R., Draper, J., Casper, J., Mandel-Gutfreund, Y., Diekhans, M. and Hughey, R. (2003) Combining local-structure, fold-recognition, and new fold methods for protein structure prediction. Proteins, 53(Suppl. 6), 491-496.
    • (2003) Proteins , vol.53 , Issue.SUPPL. 6 , pp. 491-496
    • Karplus, K.1    Karchin, R.2    Draper, J.3    Casper, J.4    Mandel-Gutfreund, Y.5    Diekhans, M.6    Hughey, R.7
  • 27
    • 0038634975 scopus 로고    scopus 로고
    • Improvement of the GenTHREADER method for genomic fold recognition
    • McGuffin, L. J. and Jones, D. T. (2003) Improvement of the GenTHREADER method for genomic fold recognition. Bioinformatics, 19, 874-881.
    • (2003) Bioinformatics , vol.19 , pp. 874-881
    • McGuffin, L.J.1    Jones, D.T.2
  • 28
    • 0035967880 scopus 로고    scopus 로고
    • Fugue: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
    • Shi, J., Blundell, T. and Mizuguchi, K. (2001) Fugue: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. J. Mol. Biol., 310, 243-257.
    • (2001) J. Mol. Biol. , vol.310 , pp. 243-257
    • Shi, J.1    Blundell, T.2    Mizuguchi, K.3
  • 29
    • 11344292852 scopus 로고    scopus 로고
    • Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments
    • Zhou, H. and Zhou, Y. (2005) Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments. Proteins, 58, 321-328.
    • (2005) Proteins , vol.58 , pp. 321-328
    • Zhou, H.1    Zhou, Y.2
  • 30
    • 0037624841 scopus 로고    scopus 로고
    • 3D-SHOTGUN: A novel, cooperative, fold-recognition meta-predictor
    • Fischer, D. (2003) 3D-SHOTGUN: a novel, cooperative, fold-recognition meta-predictor. Proteins, 51, 434-441.
    • (2003) Proteins , vol.51 , pp. 434-441
    • Fischer, D.1
  • 31
    • 1542609543 scopus 로고    scopus 로고
    • FORTE: A profile-profile comparison tool for protein fold recognition
    • Tomii, K. and Akiyama, Y. (2004) FORTE: a profile-profile comparison tool for protein fold recognition. Bioinformatics, 20, 594-595.
    • (2004) Bioinformatics , vol.20 , pp. 594-595
    • Tomii, K.1    Akiyama, Y.2
  • 32
    • 23144452044 scopus 로고    scopus 로고
    • The HHpred interactive server for protein homology detection and structure prediction
    • (Web Server issue
    • Soding, J., Biegert, A. and Lupas, A. N. (2005) The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res., 33(Web Server issue), W244-W248.
    • (2005) Nucleic Acids Res. , vol.33
    • Soding, J.1    Biegert, A.2    Lupas, A.N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.