메뉴 건너뛰기




Volumn 7, Issue 9, 2012, Pages

Pan-Genomic Analysis Provides Insights into the Genomic Variation and Evolution of Salmonella Paratyphi A

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; CONTROLLED STUDY; GENE CLUSTER; GENE NUMBER; GENETIC VARIABILITY; GENOME ANALYSIS; GENOME SIZE; HOMOLOGOUS RECOMBINATION; MOLECULAR EVOLUTION; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; PAN GENOMIC ANALYSIS; PSEUDOGENE; SALMONELLA PARATYPHI; STRAIN DIFFERENCE;

EID: 84866555340     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0045346     Document Type: Article
Times cited : (28)

References (67)
  • 1
    • 33947129778 scopus 로고    scopus 로고
    • Salmonella, the host and disease: a brief review
    • Coburn B, Grassl GA, Finlay BB, (2007) Salmonella, the host and disease: a brief review. Immunol Cell Biol 85: 112-118.
    • (2007) Immunol Cell Biol , vol.85 , pp. 112-118
    • Coburn, B.1    Grassl, G.A.2    Finlay, B.B.3
  • 2
    • 0035057454 scopus 로고    scopus 로고
    • Diverse virulence traits underlying different clinical outcomes of Salmonella infection
    • Fierer J, Guiney DG, (2001) Diverse virulence traits underlying different clinical outcomes of Salmonella infection. J Clin Invest 107: 775-780.
    • (2001) J Clin Invest , vol.107 , pp. 775-780
    • Fierer, J.1    Guiney, D.G.2
  • 5
    • 0025335992 scopus 로고
    • Evolutionary genetic relationships of clones of Salmonella serovars that cause human typhoid and other enteric fevers
    • Selander RK, Beltran P, Smith NH, Helmuth R, Rubin FA, et al. (1990) Evolutionary genetic relationships of clones of Salmonella serovars that cause human typhoid and other enteric fevers. Infect Immun 58: 2262-2275.
    • (1990) Infect Immun , vol.58 , pp. 2262-2275
    • Selander, R.K.1    Beltran, P.2    Smith, N.H.3    Helmuth, R.4    Rubin, F.A.5
  • 6
    • 73649135423 scopus 로고    scopus 로고
    • Global trends in typhoid and paratyphoid Fever
    • Crump JA, Mintz ED, (2010) Global trends in typhoid and paratyphoid Fever. Clin Infect Dis 50: 241-246.
    • (2010) Clin Infect Dis , vol.50 , pp. 241-246
    • Crump, J.A.1    Mintz, E.D.2
  • 7
    • 23944494081 scopus 로고    scopus 로고
    • Typhoid and paratyphoid fever
    • Bhan MK, Bahl R, Bhatnagar S, (2005) Typhoid and paratyphoid fever. Lancet 366: 749-762.
    • (2005) Lancet , vol.366 , pp. 749-762
    • Bhan, M.K.1    Bahl, R.2    Bhatnagar, S.3
  • 11
    • 33748175004 scopus 로고    scopus 로고
    • Emergence of Salmonella enterica serotype Paratyphi A as a major cause of enteric fever in Kathmandu, Nepal
    • Woods CW, Murdoch DR, Zimmerman MD, Glover WA, Basnyat B, et al. (2006) Emergence of Salmonella enterica serotype Paratyphi A as a major cause of enteric fever in Kathmandu, Nepal. Trans R Soc Trop Med Hyg 100: 1063-1067.
    • (2006) Trans R Soc Trop Med Hyg , vol.100 , pp. 1063-1067
    • Woods, C.W.1    Murdoch, D.R.2    Zimmerman, M.D.3    Glover, W.A.4    Basnyat, B.5
  • 14
    • 84874782326 scopus 로고    scopus 로고
    • Epidemic situation of typhoid fever and paratyphoid fever in Zhejiang Province and measures for prevention and control
    • Gong Z, Chai C, Chen E, Xie S, Mo S, et al. (2006) Epidemic situation of typhoid fever and paratyphoid fever in Zhejiang Province and measures for prevention and control. Disease Surveillance 21: 13-15.
    • (2006) Disease Surveillance , vol.21 , pp. 13-15
    • Gong, Z.1    Chai, C.2    Chen, E.3    Xie, S.4    Mo, S.5
  • 16
    • 84866564769 scopus 로고    scopus 로고
    • Analysis of epidemiology of paratyphoid during 2001-2004 in Yuhuan
    • Zhou W, Shi H, Liu C, Su M, (2006) Analysis of epidemiology of paratyphoid during 2001-2004 in Yuhuan. Chin Prev Med 17: 428-430.
    • (2006) Chin Prev Med , vol.17 , pp. 428-430
    • Zhou, W.1    Shi, H.2    Liu, C.3    Su, M.4
  • 17
    • 50649085606 scopus 로고    scopus 로고
    • Epidemics of Typhoid and Paratyphoid Fever from 1995 Through 2005 in China
    • Yan M, Liang W, Li W, Kan B, (2005) Epidemics of Typhoid and Paratyphoid Fever from 1995 Through 2005 in China. Disease Surveillance 20: 401-403.
    • (2005) Disease Surveillance , vol.20 , pp. 401-403
    • Yan, M.1    Liang, W.2    Li, W.3    Kan, B.4
  • 18
    • 84866539256 scopus 로고    scopus 로고
    • Analysis of 606 typhoid and paratyphoid cases in Guiyang region
    • Wu J, Luo T, Liang Y, (2004) Analysis of 606 typhoid and paratyphoid cases in Guiyang region. J Guiyang Medical College 29: 541-542.
    • (2004) J Guiyang Medical College , vol.29 , pp. 541-542
    • Wu, J.1    Luo, T.2    Liang, Y.3
  • 19
    • 84874761049 scopus 로고    scopus 로고
    • A molecular epidemiological study of Salmonella paratyphi A isolated from three outbreaks in Jiangsu province
    • Wang H, Gao Z, Yu X, Pan H, Zhuang L, et al. (2000) A molecular epidemiological study of Salmonella paratyphi A isolated from three outbreaks in Jiangsu province. J Disease Control 4: 317-319.
    • (2000) J Disease Control , vol.4 , pp. 317-319
    • Wang, H.1    Gao, Z.2    Yu, X.3    Pan, H.4    Zhuang, L.5
  • 20
    • 0037377818 scopus 로고    scopus 로고
    • Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18
    • Deng W, Liou SR, Plunkett GR, Mayhew GF, Rose DJ, et al. (2003) Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18. J Bacteriol 185: 2330-2337.
    • (2003) J Bacteriol , vol.185 , pp. 2330-2337
    • Deng, W.1    Liou, S.R.2    Plunkett, G.R.3    Mayhew, G.F.4    Rose, D.J.5
  • 21
    • 0035950154 scopus 로고    scopus 로고
    • Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18
    • Parkhill J, Dougan G, James KD, Thomson NR, Pickard D, et al. (2001) Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature 413: 848-852.
    • (2001) Nature , vol.413 , pp. 848-852
    • Parkhill, J.1    Dougan, G.2    James, K.D.3    Thomson, N.R.4    Pickard, D.5
  • 22
    • 63049116302 scopus 로고    scopus 로고
    • Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi
    • Holt KE, Thomson NR, Wain J, Langridge GC, Hasan R, et al. (2009) Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi. BMC Genomics 10: 36.
    • (2009) BMC Genomics , vol.10 , pp. 36
    • Holt, K.E.1    Thomson, N.R.2    Wain, J.3    Langridge, G.C.4    Hasan, R.5
  • 23
    • 9644254192 scopus 로고    scopus 로고
    • Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid
    • McClelland M, Sanderson KE, Clifton SW, Latreille P, Porwollik S, et al. (2004) Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid. Nat Genet 36: 1268-1274.
    • (2004) Nat Genet , vol.36 , pp. 1268-1274
    • McClelland, M.1    Sanderson, K.E.2    Clifton, S.W.3    Latreille, P.4    Porwollik, S.5
  • 24
    • 84887212405 scopus 로고    scopus 로고
    • Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi
    • Liu WQ, Feng Y, Wang Y, Zou QH, Chen F, et al. (2009) Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi. PLoS One 4: e4510.
    • (2009) PLoS One , vol.4
    • Liu, W.Q.1    Feng, Y.2    Wang, Y.3    Zou, Q.H.4    Chen, F.5
  • 27
    • 0035950182 scopus 로고    scopus 로고
    • Complete genome sequence of Salmonella enterica serovar Typhimurium LT2
    • McClelland M, Sanderson KE, Spieth J, Clifton SW, Latreille P, et al. (2001) Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 413: 852-856.
    • (2001) Nature , vol.413 , pp. 852-856
    • McClelland, M.1    Sanderson, K.E.2    Spieth, J.3    Clifton, S.W.4    Latreille, P.5
  • 28
    • 57349179994 scopus 로고    scopus 로고
    • Differentially evolved genes of Salmonella pathogenicity islands: insights into the mechanism of host specificity in Salmonella
    • Eswarappa SM, Janice J, Nagarajan AG, Balasundaram SV, Karnam G, et al. (2008) Differentially evolved genes of Salmonella pathogenicity islands: insights into the mechanism of host specificity in Salmonella. PLoS One 3: e3829.
    • (2008) PLoS One , vol.3
    • Eswarappa, S.M.1    Janice, J.2    Nagarajan, A.G.3    Balasundaram, S.V.4    Karnam, G.5
  • 29
    • 0036468520 scopus 로고    scopus 로고
    • Comparative genomics of closely related salmonellae
    • Edwards RA, Olsen GJ, Maloy SR, (2002) Comparative genomics of closely related salmonellae. Trends Microbiol 10: 94-99.
    • (2002) Trends Microbiol , vol.10 , pp. 94-99
    • Edwards, R.A.1    Olsen, G.J.2    Maloy, S.R.3
  • 30
    • 0036096707 scopus 로고    scopus 로고
    • Genetic diversity of Salmonella enterica serovar Paratyphi A from different geographical regions in Asia
    • Goh YL, Puthucheary SD, Chaudhry R, Bhutta ZA, Lesmana M, et al. (2002) Genetic diversity of Salmonella enterica serovar Paratyphi A from different geographical regions in Asia. J Appl Microbiol 92: 1167-1171.
    • (2002) J Appl Microbiol , vol.92 , pp. 1167-1171
    • Goh, Y.L.1    Puthucheary, S.D.2    Chaudhry, R.3    Bhutta, Z.A.4    Lesmana, M.5
  • 31
    • 84874760005 scopus 로고    scopus 로고
    • Result analysis on 212 strains of Salmonella paratyphi A in Hongta district Yuxi in Yunan by pulsed-field gel electrophoresis
    • Fu X, Chang L, Qu Y, Yang J, Yin J, et al. (2011) Result analysis on 212 strains of Salmonella paratyphi A in Hongta district Yuxi in Yunan by pulsed-field gel electrophoresis. Mod Prev Med 14: 2823.
    • (2011) Mod Prev Med , vol.14 , pp. 2823
    • Fu, X.1    Chang, L.2    Qu, Y.3    Yang, J.4    Yin, J.5
  • 32
    • 84555204660 scopus 로고    scopus 로고
    • Multilocus sequence typing and pulsed-field gel electrophoresis analysis of Salmonella Paratyphi A isolates from 2000 to 2008, China
    • Han H, Zhou HJ, Cui ZG, Du P, Kan B, (2010) Multilocus sequence typing and pulsed-field gel electrophoresis analysis of Salmonella Paratyphi A isolates from 2000 to 2008, China. Zhonghua Yu Fang Yi Xue Za Zhi 44: 810-814.
    • (2010) Zhonghua Yu Fang Yi Xue Za Zhi , vol.44 , pp. 810-814
    • Han, H.1    Zhou, H.J.2    Cui, Z.G.3    Du, P.4    Kan, B.5
  • 33
    • 84866547991 scopus 로고    scopus 로고
    • Molecular characteristic of salmonella serotype paratyphi A isolates in Hangzhou by pulse field gel electrophoresis
    • Wang H, Pan J, Meng D, Zhang W, Sun Z, (2007) Molecular characteristic of salmonella serotype paratyphi A isolates in Hangzhou by pulse field gel electrophoresis. Chin J Public Health 23: 369-370.
    • (2007) Chin J Public Health , vol.23 , pp. 369-370
    • Wang, H.1    Pan, J.2    Meng, D.3    Zhang, W.4    Sun, Z.5
  • 34
    • 25444524604 scopus 로고    scopus 로고
    • Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"
    • Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, et al. (2005) Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proc Natl Acad Sci U S A 102: 13950-13955.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 13950-13955
    • Tettelin, H.1    Masignani, V.2    Cieslewicz, M.J.3    Donati, C.4    Medini, D.5
  • 36
    • 53849104729 scopus 로고    scopus 로고
    • The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates
    • Rasko DA, Rosovitz MJ, Myers GS, Mongodin EF, Fricke WF, et al. (2008) The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J Bacteriol 190: 6881-6893.
    • (2008) J Bacteriol , vol.190 , pp. 6881-6893
    • Rasko, D.A.1    Rosovitz, M.J.2    Myers, G.S.3    Mongodin, E.F.4    Fricke, W.F.5
  • 37
    • 36549020646 scopus 로고    scopus 로고
    • Comparative genomic analyses of seventeen Streptococcus pneumoniae strains: insights into the pneumococcal supragenome
    • Hiller NL, Janto B, Hogg JS, Boissy R, Yu S, et al. (2007) Comparative genomic analyses of seventeen Streptococcus pneumoniae strains: insights into the pneumococcal supragenome. J Bacteriol 189: 8186-8195.
    • (2007) J Bacteriol , vol.189 , pp. 8186-8195
    • Hiller, N.L.1    Janto, B.2    Hogg, J.S.3    Boissy, R.4    Yu, S.5
  • 39
    • 49449098862 scopus 로고    scopus 로고
    • Streptococcus thermophilus core genome: comparative genome hybridization study of 47 strains
    • Rasmussen TB, Danielsen M, Valina O, Garrigues C, Johansen E, et al. (2008) Streptococcus thermophilus core genome: comparative genome hybridization study of 47 strains. Appl Environ Microbiol 74: 4703-4710.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 4703-4710
    • Rasmussen, T.B.1    Danielsen, M.2    Valina, O.3    Garrigues, C.4    Johansen, E.5
  • 40
    • 28444475529 scopus 로고    scopus 로고
    • Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
    • Pal C, Papp B, Lercher MJ, (2005) Adaptive evolution of bacterial metabolic networks by horizontal gene transfer. Nat Genet 37: 1372-1375.
    • (2005) Nat Genet , vol.37 , pp. 1372-1375
    • Pal, C.1    Papp, B.2    Lercher, M.J.3
  • 41
    • 16544368880 scopus 로고    scopus 로고
    • Horizontal and vertical gene transfer: the life history of pathogens
    • Lawrence JG, (2005) Horizontal and vertical gene transfer: the life history of pathogens. Contrib Microbiol 12: 255-271.
    • (2005) Contrib Microbiol , vol.12 , pp. 255-271
    • Lawrence, J.G.1
  • 42
    • 23944499633 scopus 로고    scopus 로고
    • Horizontal gene transfer, genome innovation and evolution
    • Gogarten JP, Townsend JP, (2005) Horizontal gene transfer, genome innovation and evolution. Nat Rev Microbiol 3: 679-687.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 679-687
    • Gogarten, J.P.1    Townsend, J.P.2
  • 44
    • 77952757215 scopus 로고    scopus 로고
    • High-throughput bacterial SNP typing identifies distinct clusters of Salmonella Typhi causing typhoid in Nepalese children
    • Holt KE, Baker S, Dongol S, Basnyat B, Adhikari N, et al. (2010) High-throughput bacterial SNP typing identifies distinct clusters of Salmonella Typhi causing typhoid in Nepalese children. BMC Infect Dis 10: 144.
    • (2010) BMC Infect Dis , vol.10 , pp. 144
    • Holt, K.E.1    Baker, S.2    Dongol, S.3    Basnyat, B.4    Adhikari, N.5
  • 45
    • 58549084151 scopus 로고    scopus 로고
    • A comparison of homologous recombination rates in bacteria and archaea
    • Vos M, Didelot X, (2009) A comparison of homologous recombination rates in bacteria and archaea. ISME J 3: 199-208.
    • (2009) ISME J , vol.3 , pp. 199-208
    • Vos, M.1    Didelot, X.2
  • 46
    • 33846032295 scopus 로고    scopus 로고
    • A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination?
    • Didelot X, Achtman M, Parkhill J, Thomson NR, Falush D, (2007) A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination? Genome Res 17: 61-68.
    • (2007) Genome Res , vol.17 , pp. 61-68
    • Didelot, X.1    Achtman, M.2    Parkhill, J.3    Thomson, N.R.4    Falush, D.5
  • 47
    • 0017368336 scopus 로고
    • Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution
    • Kimura M, (1977) Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution. Nature 267: 275-276.
    • (1977) Nature , vol.267 , pp. 275-276
    • Kimura, M.1
  • 48
    • 48349124258 scopus 로고    scopus 로고
    • High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
    • Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX, et al. (2008) High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Nat Genet 40: 987-993.
    • (2008) Nat Genet , vol.40 , pp. 987-993
    • Holt, K.E.1    Parkhill, J.2    Mazzoni, C.J.3    Roumagnac, P.4    Weill, F.X.5
  • 49
    • 84859171170 scopus 로고    scopus 로고
    • Optimization of pulsed-field gel electrophoresis protocols for salmonella paratyphi a subtyping
    • Chen C, Zhao Y, Han H, Pang B, Zhang J, et al. (2012) Optimization of pulsed-field gel electrophoresis protocols for salmonella paratyphi a subtyping. Foodborne Pathog Dis 9: 325-330.
    • (2012) Foodborne Pathog Dis , vol.9 , pp. 325-330
    • Chen, C.1    Zhao, Y.2    Han, H.3    Pang, B.4    Zhang, J.5
  • 50
    • 84555204660 scopus 로고    scopus 로고
    • Multilocus sequence typing and pulsed-field gel electrophoresis analysis of Salmonella Paratyphi A isolates from 2000 to 2008, China
    • Han H, Zhou HJ, Cui ZG, Du PC, Kan B, (2010) Multilocus sequence typing and pulsed-field gel electrophoresis analysis of Salmonella Paratyphi A isolates from 2000 to 2008, China. Zhonghua Yu Fang Yi Xue Za Zhi 44: 810-814.
    • (2010) Zhonghua Yu Fang Yi Xue Za Zhi , vol.44 , pp. 810-814
    • Han, H.1    Zhou, H.J.2    Cui, Z.G.3    Du, P.C.4    Kan, B.5
  • 51
    • 70549103951 scopus 로고    scopus 로고
    • Comparative genomic and phylogeographic analysis of Mycobacterium leprae
    • Monot M, Honore N, Garnier T, Zidane N, Sherafi D, et al. (2009) Comparative genomic and phylogeographic analysis of Mycobacterium leprae. Nat Genet 41: 1282-1289.
    • (2009) Nat Genet , vol.41 , pp. 1282-1289
    • Monot, M.1    Honore, N.2    Garnier, T.3    Zidane, N.4    Sherafi, D.5
  • 52
    • 67650711615 scopus 로고    scopus 로고
    • SOAP2: an improved ultrafast tool for short read alignment
    • Li R, Yu C, Li Y, Lam TW, Yiu SM, et al. (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25: 1966-1967.
    • (2009) Bioinformatics , vol.25 , pp. 1966-1967
    • Li, R.1    Yu, C.2    Li, Y.3    Lam, T.W.4    Yiu, S.M.5
  • 53
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A, (1999) CAP3: A DNA sequence assembly program. Genome Res 9: 868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 54
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 55
    • 77949512406 scopus 로고    scopus 로고
    • Tablet-next generation sequence assembly visualization
    • Milne I, Bayer M, Cardle L, Shaw P, Stephen G, et al. (2010) Tablet-next generation sequence assembly visualization. Bioinformatics 26: 401-402.
    • (2010) Bioinformatics , vol.26 , pp. 401-402
    • Milne, I.1    Bayer, M.2    Cardle, L.3    Shaw, P.4    Stephen, G.5
  • 60
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent WJ, (2002) BLAT-the BLAST-like alignment tool. Genome Res 12: 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 62
    • 0035861990 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
    • Remm M, Storm CE, Sonnhammer EL, (2001) Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol 314: 1041-1052.
    • (2001) J Mol Biol , vol.314 , pp. 1041-1052
    • Remm, M.1    Storm, C.E.2    Sonnhammer, E.L.3
  • 63
    • 33747892409 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and inparalogs shared by multiple proteomes
    • Alexeyenko A, Tamas I, Liu G, Sonnhammer EL, (2006) Automatic clustering of orthologs and inparalogs shared by multiple proteomes. Bioinformatics 22: e9-e15.
    • (2006) Bioinformatics , vol.22
    • Alexeyenko, A.1    Tamas, I.2    Liu, G.3    Sonnhammer, E.L.4
  • 64
    • 77956193448 scopus 로고    scopus 로고
    • progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
    • Darling AE, Mau B, Perna NT, (2010) progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5: e11147.
    • (2010) PLoS One , vol.5
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3
  • 65
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 67
    • 0000122573 scopus 로고
    • PHYLIP (phylogeny inference package) version 3.65
    • Felsenstein J, (1989) PHYLIP (phylogeny inference package) version 3.65. Cladistics 5: 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.