Genetic characterization of Trichomonas vaginalis isolates by use of multilocus sequence typing

Journal of Clinical Microbiology

Volumn 50, Issue 10, 2012, Pages 3293-3300

  Cornelius, Denise C ^a   Robinson, D Ashley ^a   Muzny, Christina A ^a,b   Mena, Leandro A ^a   Aanensen, David M ^c   Lushbaugh, William B ^a   Meade, John C ^a  

^a UNIVERSITY OF MISSISSIPPI SCHOOL OF MEDICINE   (United States)

^b University of Alabama at Birmingham   (United States)

^c IMPERIAL COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; FEMALE; GENE LINKAGE DISEQUILIBRIUM; GENETIC DIFFERENCE; GENETIC EPIDEMIOLOGY; GENETIC MARKER; GENETIC RECOMBINATION; GENETIC VARIABILITY; HEALTH CARE FACILITY; HOUSEKEEPING GENE; HUMAN; MICROBIAL POPULATION DYNAMICS; MOLECULAR EPIDEMIOLOGY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PARASITE ISOLATION; PHYLOGENY; POPULATION GENETICS; POPULATION STRUCTURE; PRIORITY JOURNAL; SAMPLE; SEXUALITY; TRICHOMONAS VAGINALIS;

DNA, PROTOZOAN; FEMALE; HUMANS; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; MULTILOCUS SEQUENCE TYPING; PARASITOLOGY; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA; TRICHOMONAS INFECTIONS; TRICHOMONAS VAGINALIS;

TRICHOMONAS VAGINALIS;

EID: 84866464998     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00643-12     Document Type: Article

References (69)

1. Aanensen DM, Spratt BG. 2005. The multilocus sequence typing network: mlst.net. Nucleic Acids Res. 33:W728-W733. (Pubitemid 44530019)
2. Ajzenberg D, Banuls AL, Tibayrenc M, Darde ML. 2002. Microsatellite analysis of Toxoplasma gondii shows considerable polymorphism structured into two main clonal groups. Int. J. Parasitol. 32:27-38. (Pubitemid 34131590)
3. Alderete JF, et al. 1987. Phenotypes and protein-epitope phenotypic variation among fresh isolates of Trichomonas vaginalis. Infect. Immun. 55:1037-1041. (Pubitemid 17065647)
4. Alsmark UC, Sicheritz-Ponten T, Foster PG, Hirt RP, Embley TM. 2009. Horizontal gene transfer in eukaryotic parasites: a case study of Entamoeba histolytica and Trichomonas vaginalis. Methods Mol. Biol. 532:489-500.
5. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
6. Anderson TJ, et al. 2000. Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. Mol. Biol. Evol. 17:1467-1482.
7. Andersson JO, Hirt RP, Foster PG, Roger AJ. 2006. Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes. BMC Evol. Biol. 6:27. doi:10.1186/1471-218-6-27.
8. Barker GC. 2002. Microsatellite DNA: a tool for population genetic analysis. Trans. R. Soc. Trop. Med. Hyg. 96(Suppl 1):S21-S4.
9. Carlton JM, et al. 2007. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science 315:207-212. (Pubitemid 46166360)
10. Conrad M, et al. 2011. Microsatellite polymorphism in the sexually transmitted human pathogen Trichomonas vaginalis indicates a genetically diverse parasite. Mol. Biochem. Parasitol. 175:30-38.
11. Conrad MD, et al. 2012. Extensive genetic diversity, unique population structure, and evidence of genetic exchange in the sexually transmitted parasite Trichomonas vaginalis . PLoS Negl. Trop. Dis. 6 :e1573. doi: 10.1371/journal.pntd.0001573.
12. Cooper A, et al. 2008. Genetic analysis of the human infective trypanosome Trypanosoma brucei gambiense: chromosomal segregation, crossing over, and the construction of a genetic map. Genome Biol. 9:R103.
13. Cooper JE, Feil EJ. 2006. The phylogeny of Staphylococcus aureus: which genes make the best intra-species markers? Microbiology 152:1297-1305.
14. Corander J, Marttinen P, Siren J, Tang J. 2008. Enhanced Bayesian modeling in BAPS software for learning genetic structures of populations. BMC Bioinform. 9:539. doi:10.1186/1471-2105-9-539.
15. Cornelius DC, Mena L, Lushbaugh WB, Meade JC. 2010. Genetic relatedness of Trichomonas vaginalis reference and clinical isolates. Am. J. Trop. Med. Hyg. 83:1283-1286.
16. Cotch MF, et al. 1997. Trichomonas vaginalis associated with low birth weight and preterm delivery. Sex. Transm. Dis. 24:353-360. (Pubitemid 27306585)
17. Crucitti T, Abdellati S, Van Dyck E, Buve A. 2008. Molecular typing of the actin gene of Trichomonas vaginalis isolates by PCR-restriction fragment length polymorphism. Clin. Microbiol. Infect. 14:844-852.
18. Didelot X, Falush D. 2007. Inference of bacterial microevolution using multilocus sequence data. Genetics 175:1251-1266. (Pubitemid 46798228)
19. Estoup A, Jarne P, Cornuet JM. 2002. Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis. Mol. Ecol. 11:1591-1604. (Pubitemid 35022229)
20. Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14:2611-2620. (Pubitemid 40886055)
21. Falush D, Stephens M, Pritchard JK. 2007. Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol. Ecol. Notes. 7:574-578. (Pubitemid 47035522)
22. Feil EJ, Enright MC, Spratt BG. 2000. Estimating the relative contributions of mutation and recombination to clonal diversification: a comparison between Neisseria meningitidis and Streptococcus pneumoniae. Res. Microbiol. 151:465-469. (Pubitemid 30619799)
23. Fichorova RN. 2009. Impact of Trichomonas vaginalis infection on innate immune responses and reproductive outcome. J. Reprod. Immunol. 83:185-189.
24. Francisco AP, Bugalho M, Ramirez M, Carrico JA. 2009. Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach. BMC Bioinform. 10:152. doi:10.1186/1471-2105-10-152.
25. Grundmann H, Hori S, Tanner G. 2001. Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms. J. Clin. Microbiol. 39:4190-4192. (Pubitemid 33029810)
26. Hampl V, Vanacova S, Kulda J, Flegr J. 2001. Concordance between genetic relatedness and phenotypic similarities of Trichomonas vaginalis strains. BMC Evol. Biol. 1:11. doi:10.1186/1471-2148-1-11.
27. Haubold B, Hudson RR. 2000. LIAN 3.0: detecting linkage disequilibrium in multilocus data. Linkage Anal. Bioinform. 16:847-848.
28. Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23:254-267. (Pubitemid 43100040)
29. Imwong M, et al. 2007. Contrasting genetic structure in Plasmodium vivax populations from Asia and South America. Int. J. Parasitol. 37:1013-1022. (Pubitemid 46887595)
30. Imwong M, et al. 2006. Microsatellite variation, repeat array length, and population history of Plasmodium vivax. Mol. Biol. Evol. 23:1016-1018. (Pubitemid 43726066)
31. Li WH, Sadler LA. 1991. Low nucleotide diversity in man. Genetics 129:513-523.
32. Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452.
33. Maiden MC. 2006. Multilocus sequence typing of bacteria. Annu. Rev. Microbiol. 60:561-588. (Pubitemid 44627961)
34. Maiden MC, et al. 1998. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc. Natl. Acad. Sci. U. S. A. 95:3140-3145. (Pubitemid 28135868)
35. Malik SB, Pightling AW, Stefaniak LM, Schurko AM, Logsdon JM, Jr. 2008. An expanded inventory of conserved meiotic genes provides evidence for sex in Trichomonas vaginalis. PLoS One 3:e2879. doi:10.1371/journal.pone.0002879.
36. Martin D, Rybicki E. 2000. RDP: detection of recombination amongst aligned sequences. Bioinformatics 16:562-563.
37. Martin DP, et al. 2010. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462-2463.
38. McClelland RS, et al. 2007. Infection with Trichomonas vaginalis increases the risk of HIV-1 acquisition. J. Infect. Dis. 195:698-702.
39. Meade JC, et al. 2009. Genetic diversity of Trichomonas vaginalis clinical isolates determined by EcoRI restriction fragment length polymorphism of heat-shock protein 70 genes. Am. J. Trop. Med. Hyg. 80:245-251.
40. Minkoff H, et al. 1984. Risk factors for prematurity and premature rupture of membranes: a prospective study of the vaginal flora in pregnancy. Am. J. Obstet. Gynecol. 150:965-972. (Pubitemid 15232024)
41. Muzny CA, Rivers CA, Mena LA, Schwebke JR. Genotypic characterization of Trichomonas vaginalis isolates among women who have sex with women in sexual partnerships. Sex. Transm. Dis. 39:556-558.
42. Muzny CA, Sunesara IR, Martin DH, Mena LA. 2011. Sexually transmitted infections and risk behaviors among African American women who have sex with women: does sex with men make a difference? Sex. Transm. Dis. 38:1118-1125.
43. Nadler SA, Honigberg BM. 1988. Genetic differentiation and biochemical polymorphism among trichomonads. J. Parasitol. 74:797-804.
44. Oliveira RP, et al. 1998. Probing the genetic population structure of Trypanosoma cruzi with polymorphic microsatellites. Proc. Natl. Acad. Sci. U. S. A. 95:3776-3780. (Pubitemid 28173205)
45. Posada D, Crandall KA. 2001. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc. Natl. Acad. Sci. U. S. A. 98:13757-13762. (Pubitemid 33115971)
46. Prokopi M, Chatzitheodorou T, Ackers JP, Clark CG. 2011. A preliminary investigation of microsatellite-based genotyping in Trichomonas vaginalis. Trans. R. Soc. Trop. Med. Hyg. 105:479-481.
47. Riley DE, Krieger JN. 1992. Rapid and practical DNA isolation from Trichomonas vaginalis and other nuclease-rich protozoa. Mol. Biochem. Parasitol. 51:161-163.
48. Robles JC, Koreen L, Park S, Perlin DS. 2004. Multilocus sequence typing is a reliable alternative method to DNA fingerprinting for discriminating among strains of Candida albicans. J. Clin. Microbiol. 42:2480-2488. (Pubitemid 38747494)
49. Rojas L, Fraga J, Sariego I. 2004. Genetic variability between Trichomonas vaginalis isolates and correlation with clinical presentation. Infect. Genet. Evol. 4:53-58. (Pubitemid 38305032)
50. Ryu JS, Min DY, Shin MH, Cho YH. 1998. Genetic variance of Trichomonas vaginalis isolates by Southern hybridization. Korean J. Parasitol. 36:207-211.
51. Sawyer S. 1989. Statistical tests for detecting gene conversion. Mol. Biol. Evol. 6:526-538. (Pubitemid 19210235)
52. Schmid G, Samuelson J, Rowley JT. 2011. Prevalence and incidence of selected sexually transmitted infections. World Health Organization, Geneva, Switzerland.
53. Schwenkenbecher JM, et al. 2006. Microsatellite analysis reveals genetic structure of Leishmania tropica. Int. J. Parasitol. 36:237-246. (Pubitemid 43208990)
54. Shafir SC, Sorvillo FJ, Smith L. 2009. Current issues and considerations regarding trichomoniasis and human immunodeficiency virus in African-Americans. Clin. Microbiol. Rev. 22:37-45.
55. Simo G, et al. 2010. Population genetic structure of Central African Trypanosoma brucei gambiense isolates using microsatellite DNA markers. Infect. Genet. Evol. 10:68-76.
56. Smith JM. 1992. Analyzing the mosaic structure of genes. J. Mol. Evol. 34:126-129.
57. Smith JM, Smith NH, O'Rourke M, Spratt BG. 1993. How clonal are bacteria? Proc. Natl. Acad. Sci. U. S. A. 90:4384-4388. (Pubitemid 23148908)
58. Snipes LJ, et al. 2000. Molecular epidemiology of metronidazole resistance in a population of Trichomonas vaginalis clinical isolates. J. Clin. Microbiol. 38:3004-3009. (Pubitemid 30640589)
59. Sorvillo F, Smith L, Kerndt P, Ash L. 2001. Trichomonas vaginalis, HIV, and African-Americans. Emerg. Infect. Dis. 7:927-932. (Pubitemid 33115770)
60. Stiles JK, et al. 2000. Molecular typing of Trichomonas vaginalis isolates by HSP70 restriction fragment length polymorphism. Am. J. Trop. Med. Hyg. 62:441-445. (Pubitemid 32164750)
61. Sutton M, et al. 2007. The prevalence of Trichomonas vaginalis infection among reproductive-age women in the United States, 2001-2004. Clin. Infect. Dis. 45:1319-1326. (Pubitemid 351411908)
62. Tajima F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460. (Pubitemid 14247444)
63. Tibayrenc M. 2009. Multilocus enzyme electrophoresis for parasites and other pathogens. Methods Mol. Biol. 551:13-25.
64. Upcroft JA, et al. 2006. Genotyping Trichomonas vaginalis. Int. J. Parasitol. 36:821-828. (Pubitemid 43866073)
65. Vanacova S, Tachezy J, Kulda J, Flegr J. 1997. Characterization of trichomonad species and strains by PCR fingerprinting. J. Eukaryot. Microbiol. 44:545-552. (Pubitemid 28037811)
66. World Health Organization. 2001. Global prevalence and incidence of selected curable sexually transmitted infections: overview and estimates. World Health Organization, Geneva, Switzerland.
67. Yeo M, et al. 2011. Multilocus sequence typing (MLST) for lineage assignment and high resolution diversity studies in Trypanosoma cruzi. PLoS Negl. Trop. Dis. 5:e1049. doi:10.1371/journal.pntd.0001049.
68. Zhang ZF, Begg CB. 1994. Is Trichomonas vaginalis a cause of cervical neoplasia? Results from a combined analysis of 24 studies. Int. J. Epidemiol. 23:682-690. (Pubitemid 24260366)
69. Zubacova Z, Cimburek Z, Tachezy J. 2008. Comparative analysis of trichomonad genome sizes and karyotypes. Mol. Biochem. Parasitol. 161:49-54.