Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis

Molecular Ecology

Volumn 11, Issue 9, 2002, Pages 1591-1604

  Estoup, Arnaud ^a   Jarne, Philippe ^b   Cornuet, Jean Marie ^a  

^a CENTRE DE BIOLOGIE ET DE GESTION DES POPULATIONS   (France)

^b CENTRE D ECOLOGIE FONCTIONNELLE ET EVOLUTIVE   (France)

Author keywords

Electromorph; Homoplasy; Microsatellites; Mutation models; Population genetics

Indexed keywords

EVOLUTION; GENETIC MARKERS; GENETICS, POPULATION; MICROSATELLITE REPEATS; MODELS, GENETIC; MOLECULAR BIOLOGY; MUTATION;

EID: 0036718239     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2002.01576.x     Document Type: Review

References (86)

1. Microsatellites size homoplasy, SSCP, and population structure: A case study in the freshwater snail Bulinus truncatus
2. Complex evolution of a salmonid microsatellite locus and its consequences in inferring allelic divergence from size information
3. Inference from gene trees in a subdivided population
4. Detecting population expansion and decline using microsatellites
5. Use of microsatellite loci to classify individuals by relatedness
6. High resolution of human evolutionary trees with polymorphic microsatellites
7. Phylogenetic analysis: Models and estimation procedures
8. A unified approach to study hypervariable polymorphisms: Statistical considerations of determining relatedness and population distances
9. Statistical power of an exact test of Hardy-Weinberg proportions of genotypic data at a multiallelic locus
10. New methods employing multilocus genotypes to select or exclude population as origin of individuals
11. The genetics of electrophoretic variation
12. Group selection for a polygenic behavioral trait: Estimating the degree of population subdivision
13. Pattern of size homoplasy at 10 microsatellite loci in Puma (Pumas concolor)
14. Mutational processes of simple-sequence repeat loci in human populations
15. A comprehensive genetic map of the human genome based on 5264 microsatellites
16. Size homoplasy in chloroplast microsatellites of wild perennial relatives of Soybean (Glycine subgenus Glycine)
17. Microsatellite mutations in the germline: Implications for evolutionary inference
18. Heterogeneous mutation processes in human microsatellite DNA sequences
19. Microsatellites and minisatellites for molecular ecology: Theoretical and empirical considerations
20. Microsatellite evolution: Inferences from population data
21. Juxtaposed microsatellites as diagnostic markers for admixture: Empirical evaluation with brown trout (Salmo trutta) As Model Organism
22. Comparative analysis of microsatellite and allozyme markers: A case study investigating microgeographic differentiation in brown trout (Salmo Trutta)
23. Precise assessment of the number of patrilines and of genetic relatedness in honey bee colonies
24. Size homoplasy and mutational processes of interrupted microsatellites in two bee species, Apis mellifera and Bombus terrestris (Apidae)
25. Inferring population history from microsatellite and enzyme data in serially introduced cane toads, Bufo marinus
26. Microsatellite genetic distances with range constraints: Analytic description and problems of estimation
27. Conservation and dynamics of microsatellite loci over 300 million years of marine turtle evolution
28. A comparaison of indirect methods for estimating average levels of gene flow using microsatellite data
29. Homoplasy for size at microsatellite loci in humans and chimpanzees
30. Microsatellite allele frequencies in humans and chimpanzees, with implications for constraints on allele size
31. Genetic absolute dating based on microsatellites and the origin of modern humans
32. Launching microsatellites: A review of mutation processes and methods of phylogenetic inference
33. Testing differentiation in diploid populations
34. Microsatellite allelic homoplasy due to variable flanking sequences
35. The 'evolutionary signal' of homoplasy in protein-coding gene sequences and its consequences for a priori weighting in phylogeny
36. Highly variable loci and their interpretation in evolution and conservation
37. The effect of DNA sequence polymorphisms on intragenic recombination in the rosy locus of Drosophila melanogaster
38. Microsatellites, from molecules to populations and back
39. Clustered microsatellite mutations in the pipefish Syngnathus typhle
40. The number of alleles that can be maintained in a finite population
41. Stepwise mutation model and distribution of allelic frequencies in a finite population
42. Absence of evidence for isolation by distance in an expanding cane toad (Bufo marinus) Population: An Individual-Based Analysis of Microsatellite Genotypes
43. An evaluation of evolutionary constraints on microsatellite loci using null alleles
44. Electrophoretic identity of proteins in a finite population and genetic distance between taxa
45. Evolution of microsatellite alleles in four species of Mice (Genus Apodemus)
46. Constraints on allele size at microsatellite loci: Implications for genetic differentiation
47. Accuracy of estimated phylogenetic trees from molecular data
48. Detection of polymorphism of human DNA by gel electrophoresis as single strand conformation polymorphisms
49. Phylogenetic assessment of length variation at a microsatellite locus
50. The effect of marker heterozygosity on the power to detect linkage dissequilibrium
51. Microsatellite analysis of population structure in canadian polar bears
52. An empirical evaluation of genetic distance statistics using microsatellite data from bear (Ursidae) populations
53. On the theory of partially inbreeding finite populations. I. Partial selfing
54. Microsatellite behavior with range constraints: Parameter estimation and improved distances for use in phylogenetic reconstruction
55. Pattern of molecular evolution in Avian microsatellites
56. Resolving genetic relationships with microsatellite markers: A parentage testing system for the swallow Hirundo rustica
57. Directional evolution in germline microsatellite mutations
58. Estimating relatedness using genetic markers
59. Detecting immigration by using multilocus genotypes
60. Population genetics software for exact test and ecumenicism
61. Deviations from Hardy-Weinberg proportions: Sampling variances and use in estimation of inbreeding coefficients
62. Parentage, reproductive success and breeding behaviour in the greater horseshoe bat (Rhinolophus ferrumequinum)
63. Equilibrium values of measures of population subdivision for stepwise mutation processes
64. Genetic differentiation between individuals
65. Inbreeding and relatedness coefficients: What do they measure ?
66. Testing heterozygote excess and deficiency
67. The influence of mutation, selection and reproductive systems on microsatellite variability: A simulation approach
68. Evolutionary dynamics of microsatellite DNA
69. Cladistic theory
70. A measure of population subdivision based on microsatellite allele frequencies
71. Inference in molecular population genetics
72. Within-population genetic structure in Quercus robur L. & Quercus petraea (Matt) Liebl. assessed with isozymes and microsatellites
73. 'Neighbourhood' size, dispersal and density estimates in the prickly forest skink (Gnypetoscincus queenslandiae) Using Individual Genetic and Demographic Methods
74. SSCP is not so difficult: The application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology
75. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA
76. Microsatellite allele size homoplasy in the guppy (Poecilia reticulata)
77. Extensive homoplasy, nonstepwise mutations and ancestral polymorphism at a complex microsatellite locus in lake Malawi Ciclids
78. Variation of microsatellite size homoplasy across electromorphs, loci and populations in three invertebrate species
79. Estimating F-statistics for the analysis of population structure
80. Genealogical inference from microsatellite data
81. The genetical structure of populations
82. Sequence analysis of alleles at a microsatellite locus D14S299 (wg1c5) and population genetic comparisons
83. Microsatellite variability and genetic distances