-
1
-
-
13144252236
-
Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
-
10.1073/pnas.95.6.3140
-
Maiden MCJ Bygraves JA Feil E Morelli G Russell JE Urwin R Zhang Q Zhou J Zurth K Caugant DA et al Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms Proceedings of the National Academy of Sciences 1998, 95(6):3140-3145. 10.1073/pnas.95.6.3140
-
(1998)
Proceedings of the National Academy of Sciences
, vol.95
, pp. 3140-3145
-
-
Maiden, M.C.J.1
Bygraves, J.A.2
Feil, E.3
Morelli, G.4
Russell, J.E.5
Urwin, R.6
Zhang, Q.7
Zhou, J.8
Zurth, K.9
Caugant, D.A.10
-
3
-
-
84874658398
-
-
University of Oxford (UK)
-
PubMLST University of Oxford (UK) http://pubmlst.org/
-
PubMLST
-
-
-
5
-
-
84874653716
-
-
Michigan State University
-
EcMLST Michigan State University http://www.shigatox.net/cgi-bin/mlst7/ index
-
EcMLST
-
-
-
7
-
-
0031764441
-
A multilocus sequence typing scheme for Streptococcus pneumoniae: Identification of clones associated with serious invasive disease
-
10.1099/00221287-144-11-3049 9846740
-
Enright MC Spratt BG A multilocus sequence typing scheme for Streptococcus pneumoniae: Identification of clones associated with serious invasive disease Microbiology 1998, 144(11):3049-3060. 10.1099/ 00221287-144-11-3049 9846740
-
(1998)
Microbiology
, vol.144
, Issue.11
, pp. 3049-3060
-
-
Enright, M.C.1
Spratt, B.G.2
-
8
-
-
1342304133
-
eBURST: Inferring Patterns of Evolutionary Descent among Clusters of Related Bacterial Genotypes from Multilocus Sequence Typing Data
-
10.1128/JB.186.5.1518-1530.2004 344416 14973027
-
Feil EJ Li BC Aanensen DM Hanage WP Spratt BG eBURST: Inferring Patterns of Evolutionary Descent among Clusters of Related Bacterial Genotypes from Multilocus Sequence Typing Data Journal of Bacteriology 2004, 186(5):1518-1530. 10.1128/JB.186.5.1518-1530.2004 344416 14973027
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.5
, pp. 1518-1530
-
-
Feil, E.J.1
Li, B.C.2
Aanensen, D.M.3
Hanage, W.P.4
Spratt, B.G.5
-
9
-
-
32944456498
-
Phylogenetic Analysis as a Tool in Molecular Epidemiology of Infectious Diseases
-
10.1016/j.annepidem.2005.04.010 16099674
-
Hall BG Barlow M Phylogenetic Analysis as a Tool in Molecular Epidemiology of Infectious Diseases Annals of Epidemiology 2006, 16(3):157-169. 10.1016/j.annepidem.2005.04.010 16099674
-
(2006)
Annals of Epidemiology
, vol.16
, Issue.3
, pp. 157-169
-
-
Hall, B.G.1
Barlow, M.2
-
10
-
-
43849089834
-
Microbial diversity and the genetic nature of microbial species
-
10.1038/nrmicro1872 18461076
-
Achtman M Wagner M Microbial diversity and the genetic nature of microbial species Nature Reviews Microbiology 2008, 6(6):431. 10.1038/ nrmicro1872 18461076
-
(2008)
Nature Reviews Microbiology
, vol.6
, Issue.6
, pp. 431
-
-
Achtman, M.1
Wagner, M.2
-
11
-
-
30744470609
-
Application of phylogenetic networks in evolutionay studies
-
10.1093/molbev/msj030 16221896
-
Huson DH Bryant D Application of phylogenetic networks in evolutionay studies Molecular Biology and Evolution 2006, 23:254-267. 10.1093/molbev/ msj030 16221896
-
(2006)
Molecular Biology and Evolution
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
12
-
-
0345328128
-
Gene sequences useful for predicting relatedness of whole genomes in bacteria
-
10.1099/ijs.0.02713-0 14657120
-
Zeigler DR Gene sequences useful for predicting relatedness of whole genomes in bacteria International Journal of Systematic and Evolutionary Microbiology 2003, 53(6):1893-1900. 10.1099/ijs.0.02713-0 14657120
-
(2003)
International Journal of Systematic and Evolutionary Microbiology
, vol.53
, Issue.6
, pp. 1893-1900
-
-
Zeigler, D.R.1
-
13
-
-
23944437942
-
Re-evaluating prokaryotic species
-
10.1038/nrmicro1236 16138101
-
Gevers D Cohan FM Lawrence JG Spratt BG Coenye T Feil EJ e Stackebrandt de Peer YV Vandamme P F LT Swings J Re-evaluating prokaryotic species Nature Reviews Microbiology 2005, 3:733-739. 10.1038/nrmicro1236 16138101
-
(2005)
Nature Reviews Microbiology
, vol.3
, pp. 733-739
-
-
Gevers, D.1
Cohan, F.M.2
Lawrence, J.G.3
Spratt, B.G.4
Coenye, T.5
Feil, E.J.6
Stackebrandt7
de Peer, Y.V.8
Vandamme, P.F.L.T.9
Swings, J.10
-
14
-
-
34249027580
-
Inference of Bacterial Microevolution Using Multilocus Sequence Data
-
10.1534/genetics.106.063305 17151252
-
Didelot X Falush D Inference of Bacterial Microevolution Using Multilocus Sequence Data Genetics 2007, 175(3):1251. 10.1534/ genetics.106.063305 1840087 17151252
-
(2007)
Genetics
, vol.175
, Issue.3
, pp. 1251
-
-
Didelot, X.1
Falush, D.2
-
15
-
-
0035793056
-
Recombination within natural populations of pathogenic bacteria: Short-term empirical estimates and long-term phylogenetic consequences
-
10.1073/pnas.98.1.182
-
Feil EJ Holmes EC Bessen DE Chan MS Day NPJ Enright MC Goldstein R Hood DW Kalia A Moore CE et al Recombination within natural populations of pathogenic bacteria: Short-term empirical estimates and long-term phylogenetic consequences Proceedings of the National Academy of Sciences 2001, 98:182. 10.1073/pnas.98.1.182
-
(2001)
Proceedings of the National Academy of Sciences
, vol.98
, pp. 182
-
-
Feil, E.J.1
Holmes, E.C.2
Bessen, D.E.3
Chan, M.S.4
Day, N.P.J.5
Enright, M.C.6
Goldstein, R.7
Hood, D.W.8
Kalia, A.9
Moore, C.E.10
-
16
-
-
0034539018
-
Population structure and evolutionay dynamics of pathogenic bacteria
-
10.1002/1521-1878(200012)22:12<1115::AID-BIES9>3.0.CO;2-R 11084627
-
Smith JM Feil EJ Smith NH Population structure and evolutionay dynamics of pathogenic bacteria BioEssays 2000, 22:1115-1122. 10.1002/ 1521-1878(200012)22:12<1115::AID-BIES9>3.0.CO;2-R 11084627
-
(2000)
BioEssays
, vol.22
, pp. 1115-1122
-
-
Smith, J.M.1
Feil, E.J.2
Smith, N.H.3
-
17
-
-
84874664535
-
-
Imperial College of London
-
eBURST V3 readme file Imperial College of London http://eburst.mlst.net/ documents/eBURST_readme_v3.pdf
-
EBURST V3 Readme File
-
-
-
18
-
-
56849114851
-
Seasonality and outbreak of a predominant Streptococcus pneumoniae serotype 1 clone from The Gambia: Expansion of ST217 hypervirulent clonal complex in West Africa
-
10.1186/1471-2180-8-198 2587476 19014613
-
Antonio M Hakeem I Awine T Secka O Sankareh K Nsekpong D Lahai G Akisanya A Egere U Enwere G Zaman SMA Hill PC Corrah T Cutts F Greenwood BM Adegbola RA Seasonality and outbreak of a predominant Streptococcus pneumoniae serotype 1 clone from The Gambia: Expansion of ST217 hypervirulent clonal complex in West Africa BMC Microbiology 2008, 8:198. 10.1186/1471-2180-8-198 2587476 19014613
-
(2008)
BMC Microbiology
, vol.8
, pp. 198
-
-
Antonio, M.1
Hakeem, I.2
Awine, T.3
Secka, O.4
Sankareh, K.5
Nsekpong, D.6
Lahai, G.7
Akisanya, A.8
Egere, U.9
Enwere, G.10
Zaman, S.M.A.11
Hill, P.C.12
Corrah, T.13
Cutts, F.14
Greenwood, B.M.15
Adegbola, R.A.16
-
19
-
-
3843099223
-
Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s
-
10.1128/JB.186.16.5496-5505.2004 490882 15292152
-
Schouls LM Heide van der HG Vauterin L Vauterin P Mooi FR Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s Journal of Bacteriology 2004, 186:5496-5505. 10.1128/ JB.186.16.5496-5505.2004 490882 15292152
-
(2004)
Journal of Bacteriology
, vol.186
, pp. 5496-5505
-
-
Schouls, L.M.1
Heide, H.G.2
Vauterin, L.3
Vauterin, P.4
Mooi, F.R.5
-
20
-
-
44449093013
-
Polyclonal population structure of Streptococcus pneumoniae isolates in Spain carrying mef and mef plus erm(B)
-
10.1128/AAC.01487-07 2415790 18362188
-
de la Pedrosa EG Morosini MI Linden van der M Ruiz-Garbajosa P Galan JC Baquero F Reinert RR Canton R Polyclonal population structure of Streptococcus pneumoniae isolates in Spain carrying mef and mef plus erm(B) Antimicrobial Agents and Chemotherapy 2008, 52:1964-1969. 10.1128/ AAC.01487-07 2415790 18362188
-
(2008)
Antimicrobial Agents and Chemotherapy
, vol.52
, pp. 1964-1969
-
-
de la Pedrosa, E.G.1
Morosini, M.I.2
Linden, M.3
Ruiz-Garbajosa, P.4
Galan, J.C.5
Baquero, F.6
Reinert, R.R.7
Canton, R.8
-
21
-
-
33745136790
-
Multilocus sequence typing scheme for Entrococcus faecalis reveals hospital-adapted genetic complexes in a background of high rates of recombination
-
10.1128/JCM.02596-05 1489431 16757624
-
Ruiz-Garbajosa P Bonten MJ Robinson DA Top J Nallapareddy SR Torres C Coque TM Canton R Baquero F Murray BE del Campo R Willems RJ Multilocus sequence typing scheme for Entrococcus faecalis reveals hospital-adapted genetic complexes in a background of high rates of recombination Journal of Clinical Microbiology 2006, 44:2220-2228. 10.1128/JCM.02596-05 1489431 16757624
-
(2006)
Journal of Clinical Microbiology
, vol.44
, pp. 2220-2228
-
-
Ruiz-Garbajosa, P.1
Bonten, M.J.2
Robinson, D.A.3
Top, J.4
Nallapareddy, S.R.5
Torres, C.6
Coque, T.M.7
Canton, R.8
Baquero, F.9
Murray, B.E.10
del Campo, R.11
Willems, R.J.12
-
23
-
-
70350674995
-
On the shortest spanning subtree of a graph and the traveling salesman problem
-
10.2307/2033241
-
Kruskal JB On the shortest spanning subtree of a graph and the traveling salesman problem Proceedings of the American Mathematical Society 1956, 7:48-50. 10.2307/2033241
-
(1956)
Proceedings of the American Mathematical Society
, vol.7
, pp. 48-50
-
-
Kruskal, J.B.1
-
27
-
-
0001587384
-
On the abstract properties of linear dependence
-
10.2307/2371182
-
Whitney H On the abstract properties of linear dependence American Journal of Mathematics 1935, 57(3):509-533. 10.2307/2371182
-
(1935)
American Journal of Mathematics
, vol.57
, Issue.3
, pp. 509-533
-
-
Whitney, H.1
-
29
-
-
27744567233
-
Matroids and the greedy algorithm
-
10.1007/BF01584082
-
Edmonds J Matroids and the greedy algorithm Mathematical Programming 1971, 1:127-136. 10.1007/BF01584082
-
(1971)
Mathematical Programming
, vol.1
, pp. 127-136
-
-
Edmonds, J.1
-
30
-
-
38149119489
-
Emergence of Clonal Complex 17 Enterococcus faecium in The Netherlands
-
10.1128/JCM.01351-07 2224266 17977983
-
Top J Willems R Velden van der S Asbroek M Bonten M Emergence of Clonal Complex 17 Enterococcus faecium in The Netherlands Journal of Clinical Microbiology 2008, 46:214. 10.1128/JCM.01351-07 2224266 17977983
-
(2008)
Journal of Clinical Microbiology
, vol.46
, pp. 214
-
-
Top, J.1
Willems, R.2
Velden, S.3
Asbroek, M.4
Bonten, M.5
-
31
-
-
56649094585
-
High acquisition and environmental contamination rates of CC17 ampicillin-resistant Enterococcus faecium in a Dutch hospital
-
10.1093/jac/dkn390 18812427
-
de Regt MJA Wagen van der LE Top J Blok HEM Hopmans TEM Dekker AW Hene RJ Siersema PD Willems RJL Bonten MJM High acquisition and environmental contamination rates of CC17 ampicillin-resistant Enterococcus faecium in a Dutch hospital Journal of Antimicrobial Chemotherapy 2008, 62(6):1401-1406. 10.1093/jac/dkn390 18812427
-
(2008)
Journal of Antimicrobial Chemotherapy
, vol.62
, Issue.6
, pp. 1401-1406
-
-
de Regt, M.J.A.1
Wagen, L.E.2
Top, J.3
Blok, H.E.M.4
Hopmans, T.E.M.5
Dekker, A.W.6
Hene, R.J.7
Siersema, P.D.8
Willems, R.J.L.9
Bonten, M.J.M.10
-
32
-
-
57649225475
-
Large clonal outbreak of multidrug-resistant CC17 ST17 Enterococcus faecium containing Tn5382 in a Spanish hospital
-
10.1093/jac/dkn449 19001448
-
Valdezate S Labayru C Navarro A Mantecon MA Ortega M Coque TM Garcia M Saez-Nieto JA Large clonal outbreak of multidrug-resistant CC17 ST17 Enterococcus faecium containing Tn5382 in a Spanish hospital Journal of Antimicrobial Chemotherapy 2009, 63:17. 10.1093/jac/dkn449 19001448
-
(2009)
Journal of Antimicrobial Chemotherapy
, vol.63
, pp. 17
-
-
Valdezate, S.1
Labayru, C.2
Navarro, A.3
Mantecon, M.A.4
Ortega, M.5
Coque, T.M.6
Garcia, M.7
Saez-Nieto, J.A.8
-
33
-
-
4844227592
-
Disease susceptibility to ST11 complex meningococci bearing serogroup C or W135 polysaccharide capsules, North America
-
15504268
-
Pollard AJ Ochnio J Ho M Callaghan M Bigham M Dobson S Disease susceptibility to ST11 complex meningococci bearing serogroup C or W135 polysaccharide capsules, North America Emerging Infectious Diseases 2004, 10(10):1812-1815. 15504268
-
(2004)
Emerging Infectious Diseases
, vol.10
, Issue.10
, pp. 1812-1815
-
-
Pollard, A.J.1
Ochnio, J.2
Ho, M.3
Callaghan, M.4
Bigham, M.5
Dobson, S.6
-
34
-
-
33748883185
-
No evidence for capsule replacement following mass immunisation with meningococcal serogroup C conjugate vaccines in England and Wales
-
10.1016/S1473-3099(06)70584-9 17008169
-
Trotter CL Ramsay ME Gray S Fox A Kaczmarski E No evidence for capsule replacement following mass immunisation with meningococcal serogroup C conjugate vaccines in England and Wales The Lancet Infectious Diseases 2006, 6(10):616-617. 10.1016/S1473-3099(06)70584-9 17008169
-
(2006)
The Lancet Infectious Diseases
, vol.6
, Issue.10
, pp. 616-617
-
-
Trotter, C.L.1
Ramsay, M.E.2
Gray, S.3
Fox, A.4
Kaczmarski, E.5
-
36
-
-
84874658847
-
-
SLAC - Stanford Linear Accelerator Center
-
FreeHEP Java Libraries SLAC - Stanford Linear Accelerator Center http://java.freehep.org/
-
FreeHEP Java Libraries
-
-
-
37
-
-
34249745345
-
Assessing the reliability of eBURST using simulated populations with known ancestry
-
10.1186/1471-2180-7-30 1865383 17430587
-
Turner KME Hanage WP Fraser C Connor TR Spratt BG Assessing the reliability of eBURST using simulated populations with known ancestry BMC Microbiology 2007, 7:30. 10.1186/1471-2180-7-30 1865383 17430587
-
(2007)
BMC Microbiology
, vol.7
, pp. 30
-
-
Turner, K.M.E.1
Hanage, W.P.2
Fraser, C.3
Connor, T.R.4
Spratt, B.G.5
-
38
-
-
53849111617
-
Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens
-
10.1146/annurev.micro.62.081307.162832 18785837
-
Achtman M Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens Annu Rev Microbiol 2008, 62:53-70. 10.1146/annurev.micro.62.081307.162832 18785837
-
(2008)
Annu Rev Microbiol
, vol.62
, pp. 53-70
-
-
Achtman, M.1
-
39
-
-
45249087278
-
Evolution and Diversity of Clonal Bacteria: The Paradigm of Mycobacterium tuberculosis
-
10.1371/journal.pone.0001538 2211405 18253486
-
Dos Vultos T Mestre O Rauzier J Golec M Rastogi N Rasolofo V Tonjum T Sola C Matic I Gicquel B Evolution and Diversity of Clonal Bacteria: The Paradigm of Mycobacterium tuberculosis PLoS ONE 2008, 3(2). 10.1371/ journal.pone.0001538 2211405 18253486
-
(2008)
PLoS ONE
, vol.3
, Issue.2
-
-
Dos Vultos, T.1
Mestre, O.2
Rauzier, J.3
Golec, M.4
Rastogi, N.5
Rasolofo, V.6
Tonjum, T.7
Sola, C.8
Matic, I.9
Gicquel, B.10
-
40
-
-
33751558792
-
Evolutionary history of Salmonella typhi
-
10.1126/science.1134933 2652035 17124322
-
Roumagnac P Weill F Dolecek C Baker S Brisse S Chinh N Le T Acosta C Farrar J Dougan G et al Evolutionary history of Salmonella typhi Science 2006, 314(5803):1301-1304. 10.1126/science.1134933 2652035 17124322
-
(2006)
Science
, vol.314
, Issue.5803
, pp. 1301-1304
-
-
Roumagnac, P.1
Weill, F.2
Dolecek, C.3
Baker, S.4
Brisse, S.5
Chinh, N.6
Le, T.7
Acosta, C.8
Farrar, J.9
Dougan, G.10
-
41
-
-
52949129115
-
Frequent emergence and limited geographic dispersal of methicillin-resistant Staphylococcus aureus
-
10.1073/pnas.0804178105
-
Nübel U Roumagnac P Feldkamp M Song J Ko K Huang Y Coombs G Ip M Westh H Skov R et al Frequent emergence and limited geographic dispersal of methicillin-resistant Staphylococcus aureus Proceedings of the National Academy of Sciences 2008, 105(37):14130. 10.1073/pnas.0804178105
-
(2008)
Proceedings of the National Academy of Sciences
, vol.105
, Issue.37
, pp. 14130
-
-
Nübel, U.1
Roumagnac, P.2
Feldkamp, M.3
Song, J.4
Ko, K.5
Huang, Y.6
Coombs, G.7
Ip, M.8
Westh, H.9
Skov, R.10
|