메뉴 건너뛰기




Volumn 10, Issue , 2009, Pages

Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach

Author keywords

[No Author keywords available]

Indexed keywords

BURKHOLDERIA PSEUDOMALLEI; COMPREHENSIVE ANALYSIS; ENTEROCOCCUS FAECIUM; GLOBAL OPTIMAL SOLUTIONS; MULTILOCUS SEQUENCE TYPING; OPTIMIZED IMPLEMENTATION; SOFTWARE IMPLEMENTATION; STREPTOCOCCUS PNEUMONIAE;

EID: 67650093575     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-10-152     Document Type: Article
Times cited : (482)

References (41)
  • 3
    • 84874658398 scopus 로고    scopus 로고
    • University of Oxford (UK)
    • PubMLST University of Oxford (UK) http://pubmlst.org/
    • PubMLST
  • 5
    • 84874653716 scopus 로고    scopus 로고
    • Michigan State University
    • EcMLST Michigan State University http://www.shigatox.net/cgi-bin/mlst7/ index
    • EcMLST
  • 7
    • 0031764441 scopus 로고    scopus 로고
    • A multilocus sequence typing scheme for Streptococcus pneumoniae: Identification of clones associated with serious invasive disease
    • 10.1099/00221287-144-11-3049 9846740
    • Enright MC Spratt BG A multilocus sequence typing scheme for Streptococcus pneumoniae: Identification of clones associated with serious invasive disease Microbiology 1998, 144(11):3049-3060. 10.1099/ 00221287-144-11-3049 9846740
    • (1998) Microbiology , vol.144 , Issue.11 , pp. 3049-3060
    • Enright, M.C.1    Spratt, B.G.2
  • 8
    • 1342304133 scopus 로고    scopus 로고
    • eBURST: Inferring Patterns of Evolutionary Descent among Clusters of Related Bacterial Genotypes from Multilocus Sequence Typing Data
    • 10.1128/JB.186.5.1518-1530.2004 344416 14973027
    • Feil EJ Li BC Aanensen DM Hanage WP Spratt BG eBURST: Inferring Patterns of Evolutionary Descent among Clusters of Related Bacterial Genotypes from Multilocus Sequence Typing Data Journal of Bacteriology 2004, 186(5):1518-1530. 10.1128/JB.186.5.1518-1530.2004 344416 14973027
    • (2004) Journal of Bacteriology , vol.186 , Issue.5 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Hanage, W.P.4    Spratt, B.G.5
  • 9
    • 32944456498 scopus 로고    scopus 로고
    • Phylogenetic Analysis as a Tool in Molecular Epidemiology of Infectious Diseases
    • 10.1016/j.annepidem.2005.04.010 16099674
    • Hall BG Barlow M Phylogenetic Analysis as a Tool in Molecular Epidemiology of Infectious Diseases Annals of Epidemiology 2006, 16(3):157-169. 10.1016/j.annepidem.2005.04.010 16099674
    • (2006) Annals of Epidemiology , vol.16 , Issue.3 , pp. 157-169
    • Hall, B.G.1    Barlow, M.2
  • 10
    • 43849089834 scopus 로고    scopus 로고
    • Microbial diversity and the genetic nature of microbial species
    • 10.1038/nrmicro1872 18461076
    • Achtman M Wagner M Microbial diversity and the genetic nature of microbial species Nature Reviews Microbiology 2008, 6(6):431. 10.1038/ nrmicro1872 18461076
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.6 , pp. 431
    • Achtman, M.1    Wagner, M.2
  • 11
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionay studies
    • 10.1093/molbev/msj030 16221896
    • Huson DH Bryant D Application of phylogenetic networks in evolutionay studies Molecular Biology and Evolution 2006, 23:254-267. 10.1093/molbev/ msj030 16221896
    • (2006) Molecular Biology and Evolution , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 12
    • 0345328128 scopus 로고    scopus 로고
    • Gene sequences useful for predicting relatedness of whole genomes in bacteria
    • 10.1099/ijs.0.02713-0 14657120
    • Zeigler DR Gene sequences useful for predicting relatedness of whole genomes in bacteria International Journal of Systematic and Evolutionary Microbiology 2003, 53(6):1893-1900. 10.1099/ijs.0.02713-0 14657120
    • (2003) International Journal of Systematic and Evolutionary Microbiology , vol.53 , Issue.6 , pp. 1893-1900
    • Zeigler, D.R.1
  • 14
    • 34249027580 scopus 로고    scopus 로고
    • Inference of Bacterial Microevolution Using Multilocus Sequence Data
    • 10.1534/genetics.106.063305 17151252
    • Didelot X Falush D Inference of Bacterial Microevolution Using Multilocus Sequence Data Genetics 2007, 175(3):1251. 10.1534/ genetics.106.063305 1840087 17151252
    • (2007) Genetics , vol.175 , Issue.3 , pp. 1251
    • Didelot, X.1    Falush, D.2
  • 16
    • 0034539018 scopus 로고    scopus 로고
    • Population structure and evolutionay dynamics of pathogenic bacteria
    • 10.1002/1521-1878(200012)22:12<1115::AID-BIES9>3.0.CO;2-R 11084627
    • Smith JM Feil EJ Smith NH Population structure and evolutionay dynamics of pathogenic bacteria BioEssays 2000, 22:1115-1122. 10.1002/ 1521-1878(200012)22:12<1115::AID-BIES9>3.0.CO;2-R 11084627
    • (2000) BioEssays , vol.22 , pp. 1115-1122
    • Smith, J.M.1    Feil, E.J.2    Smith, N.H.3
  • 17
    • 84874664535 scopus 로고    scopus 로고
    • Imperial College of London
    • eBURST V3 readme file Imperial College of London http://eburst.mlst.net/ documents/eBURST_readme_v3.pdf
    • EBURST V3 Readme File
  • 19
    • 3843099223 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s
    • 10.1128/JB.186.16.5496-5505.2004 490882 15292152
    • Schouls LM Heide van der HG Vauterin L Vauterin P Mooi FR Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s Journal of Bacteriology 2004, 186:5496-5505. 10.1128/ JB.186.16.5496-5505.2004 490882 15292152
    • (2004) Journal of Bacteriology , vol.186 , pp. 5496-5505
    • Schouls, L.M.1    Heide, H.G.2    Vauterin, L.3    Vauterin, P.4    Mooi, F.R.5
  • 23
    • 70350674995 scopus 로고
    • On the shortest spanning subtree of a graph and the traveling salesman problem
    • 10.2307/2033241
    • Kruskal JB On the shortest spanning subtree of a graph and the traveling salesman problem Proceedings of the American Mathematical Society 1956, 7:48-50. 10.2307/2033241
    • (1956) Proceedings of the American Mathematical Society , vol.7 , pp. 48-50
    • Kruskal, J.B.1
  • 27
    • 0001587384 scopus 로고
    • On the abstract properties of linear dependence
    • 10.2307/2371182
    • Whitney H On the abstract properties of linear dependence American Journal of Mathematics 1935, 57(3):509-533. 10.2307/2371182
    • (1935) American Journal of Mathematics , vol.57 , Issue.3 , pp. 509-533
    • Whitney, H.1
  • 29
    • 27744567233 scopus 로고
    • Matroids and the greedy algorithm
    • 10.1007/BF01584082
    • Edmonds J Matroids and the greedy algorithm Mathematical Programming 1971, 1:127-136. 10.1007/BF01584082
    • (1971) Mathematical Programming , vol.1 , pp. 127-136
    • Edmonds, J.1
  • 30
    • 38149119489 scopus 로고    scopus 로고
    • Emergence of Clonal Complex 17 Enterococcus faecium in The Netherlands
    • 10.1128/JCM.01351-07 2224266 17977983
    • Top J Willems R Velden van der S Asbroek M Bonten M Emergence of Clonal Complex 17 Enterococcus faecium in The Netherlands Journal of Clinical Microbiology 2008, 46:214. 10.1128/JCM.01351-07 2224266 17977983
    • (2008) Journal of Clinical Microbiology , vol.46 , pp. 214
    • Top, J.1    Willems, R.2    Velden, S.3    Asbroek, M.4    Bonten, M.5
  • 33
    • 4844227592 scopus 로고    scopus 로고
    • Disease susceptibility to ST11 complex meningococci bearing serogroup C or W135 polysaccharide capsules, North America
    • 15504268
    • Pollard AJ Ochnio J Ho M Callaghan M Bigham M Dobson S Disease susceptibility to ST11 complex meningococci bearing serogroup C or W135 polysaccharide capsules, North America Emerging Infectious Diseases 2004, 10(10):1812-1815. 15504268
    • (2004) Emerging Infectious Diseases , vol.10 , Issue.10 , pp. 1812-1815
    • Pollard, A.J.1    Ochnio, J.2    Ho, M.3    Callaghan, M.4    Bigham, M.5    Dobson, S.6
  • 34
    • 33748883185 scopus 로고    scopus 로고
    • No evidence for capsule replacement following mass immunisation with meningococcal serogroup C conjugate vaccines in England and Wales
    • 10.1016/S1473-3099(06)70584-9 17008169
    • Trotter CL Ramsay ME Gray S Fox A Kaczmarski E No evidence for capsule replacement following mass immunisation with meningococcal serogroup C conjugate vaccines in England and Wales The Lancet Infectious Diseases 2006, 6(10):616-617. 10.1016/S1473-3099(06)70584-9 17008169
    • (2006) The Lancet Infectious Diseases , vol.6 , Issue.10 , pp. 616-617
    • Trotter, C.L.1    Ramsay, M.E.2    Gray, S.3    Fox, A.4    Kaczmarski, E.5
  • 36
    • 84874658847 scopus 로고    scopus 로고
    • SLAC - Stanford Linear Accelerator Center
    • FreeHEP Java Libraries SLAC - Stanford Linear Accelerator Center http://java.freehep.org/
    • FreeHEP Java Libraries
  • 37
    • 34249745345 scopus 로고    scopus 로고
    • Assessing the reliability of eBURST using simulated populations with known ancestry
    • 10.1186/1471-2180-7-30 1865383 17430587
    • Turner KME Hanage WP Fraser C Connor TR Spratt BG Assessing the reliability of eBURST using simulated populations with known ancestry BMC Microbiology 2007, 7:30. 10.1186/1471-2180-7-30 1865383 17430587
    • (2007) BMC Microbiology , vol.7 , pp. 30
    • Turner, K.M.E.1    Hanage, W.P.2    Fraser, C.3    Connor, T.R.4    Spratt, B.G.5
  • 38
    • 53849111617 scopus 로고    scopus 로고
    • Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens
    • 10.1146/annurev.micro.62.081307.162832 18785837
    • Achtman M Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens Annu Rev Microbiol 2008, 62:53-70. 10.1146/annurev.micro.62.081307.162832 18785837
    • (2008) Annu Rev Microbiol , vol.62 , pp. 53-70
    • Achtman, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.