-
1
-
-
84856235183
-
Progress and future prospects for pentose-specific biocatalysts in biorefining
-
Dumon C, Song L, Bozonnet S, Fauré R, &, O'Donohue MJ, (2012) Progress and future prospects for pentose-specific biocatalysts in biorefining. Process Biochem 47, 346-357.
-
(2012)
Process Biochem
, vol.47
, pp. 346-357
-
-
Dumon, C.1
Song, L.2
Bozonnet, S.3
Fauré, R.4
O'Donohue, M.J.5
-
2
-
-
33645559423
-
Structural insight into the ligand specificity of a thermostable family 51 arabinofuranosidase, Araf51, from Clostridium thermocellum
-
Taylor EJ, Smith NL, Turkenburg JP, D'Souza S, Gilbert HJ, &, Davies GJ, (2006) Structural insight into the ligand specificity of a thermostable family 51 arabinofuranosidase, Araf51, from Clostridium thermocellum. Biochem J 395, 31-37.
-
(2006)
Biochem J
, vol.395
, pp. 31-37
-
-
Taylor, E.J.1
Smith, N.L.2
Turkenburg, J.P.3
D'Souza, S.4
Gilbert, H.J.5
Davies, G.J.6
-
3
-
-
17644434949
-
Crystal structure and snapshots along the reaction pathway of a family 51 α-L-arabinofuranosidase
-
DOI 10.1093/emboj/cdg494
-
Hövel K, Shallom D, Niefind K, Belakhov V, Shoham G, Baasov T, Shoham Y, &, Schomburg D, (2003) Crystal structure and snapshots along the reaction pathway of a family 51 α-l-arabinofuranosidase. EMBO J 22, 4922-4932. (Pubitemid 37222014)
-
(2003)
EMBO Journal
, vol.22
, Issue.19
, pp. 4922-4932
-
-
Hovel, K.1
Shallom, D.2
Niefind, K.3
Belakhov, V.4
Shoham, G.5
Baasov, T.6
Shoham, Y.7
Schomburg, D.8
-
4
-
-
84863242735
-
Crystal structures of glycoside hydrolase family 51 α-l- arabinofuranosidase from Thermotoga maritima
-
Im D-H, Kimura K, Hayasaka F, Tanaka T, Noguchi M, Kobayashi A, Shoda S, Miyazaki K, Wakagi T, &, Fushinobu S, (2012) Crystal structures of glycoside hydrolase family 51 α-l-arabinofuranosidase from Thermotoga maritima. Biosci Biotechnol Biochem 76, 423-428.
-
(2012)
Biosci Biotechnol Biochem
, vol.76
, pp. 423-428
-
-
Im, D.-H.1
Kimura, K.2
Hayasaka, F.3
Tanaka, T.4
Noguchi, M.5
Kobayashi, A.6
Shoda, S.7
Miyazaki, K.8
Wakagi, T.9
Fushinobu, S.10
-
5
-
-
84860389042
-
Structure of a novel thermostable GH51 α-l-arabinofuranosidase from Thermotoga petrophila RKU-1
-
Souza TACB, Santos CR, Souza AR, Oldiges DP, Ruller R, Prade RA, Squina FM, &, Murakami MT, (2011) Structure of a novel thermostable GH51 α-l-arabinofuranosidase from Thermotoga petrophila RKU-1. Protein Sci 20, 1632-1637.
-
(2011)
Protein Sci
, vol.20
, pp. 1632-1637
-
-
Souza, T.1
Santos, C.R.2
Souza, A.R.3
Oldiges, D.P.4
Ruller, R.5
Prade, R.A.6
Squina, F.M.7
Murakami, M.T.8
-
6
-
-
47249161669
-
The structure of the complex between a branched pentasaccharide and Thermobacillus xylanilyticus GH-51 arabinofuranosidase reveals xylan-binding determinants and induced fit
-
DOI 10.1021/bi800424e
-
Paës G, Skov LK, O'Donohue MJ, Rémond C, Kastrup JS, Gajhede M, &, Mirza O, (2008) The structure of the complex between a branched pentasaccharide and Thermobacillus xylanilyticus GH-51 arabinofuranosidase reveals xylan-binding determinants and induced fit. Biochemistry 47, 7441-7451. (Pubitemid 351991023)
-
(2008)
Biochemistry
, vol.47
, Issue.28
, pp. 7441-7451
-
-
Paes, G.1
Skov, L.K.2
O'Donohue, M.J.3
Remond, C.4
Kastrup, J.S.5
Gajhede, M.6
Mirza, O.7
-
7
-
-
0028956984
-
β-Glucosidase, β-galactosidase, family A cellulases, family F xylanases and two barley glycanases form a superfamily of enzymes with 8-fold β/α architecture and with two conserved glutamates near the carboxy-terminal ends of β-strands four and seven
-
Jenkins J, Leggio LL, Harris G, &, Pickersgill R, (1995) β-Glucosidase, β-galactosidase, family A cellulases, family F xylanases and two barley glycanases form a superfamily of enzymes with 8-fold β/α architecture and with two conserved glutamates near the carboxy-terminal ends of β-strands four and seven. FEBS Lett 362, 281-285.
-
(1995)
FEBS Lett
, vol.362
, pp. 281-285
-
-
Jenkins, J.1
Leggio, L.L.2
Harris, G.3
Pickersgill, R.4
-
8
-
-
0029929874
-
Updating the sequence-based classification of glycosyl hydrolases [1]
-
Henrissat B, &, Bairoch A, (1996) Updating the sequence-based classification of glycosyl hydrolases. Biochem J 316, 695-696. (Pubitemid 26182174)
-
(1996)
Biochemical Journal
, vol.316
, Issue.2
, pp. 695-696
-
-
Henrissat, B.1
Bairoch, A.2
-
9
-
-
0029645404
-
Structures and mechanisms of glycosyl hydrolases
-
Davies G, &, Henrissat B, (1995) Structures and mechanisms of glycosyl hydrolases. Structure 3, 853-859.
-
(1995)
Structure
, vol.3
, pp. 853-859
-
-
Davies, G.1
Henrissat, B.2
-
10
-
-
0031015902
-
Nomenclature for sugar-binding subsites in glycosyl hydrolases [1]
-
Davies GJ, Wilson KS, &, Henrissat B, (1997) Nomenclature for sugar-binding subsites in glycosyl hydrolases. Biochem J 321, 557-559. (Pubitemid 27056509)
-
(1997)
Biochemical Journal
, vol.321
, Issue.2
, pp. 557-559
-
-
Davies, G.J.1
Wilson, K.S.2
Henrissat, B.3
-
11
-
-
67650576086
-
A brief and informationally rich naming system for oligosaccharide motifs of heteroxylans found in plant cell walls
-
Fauré R, Courtin CM, Delcour JA, Dumon C, Faulds CB, Fincher GB, Fort S, Fry SC, Halila S, Kabel MA, et al. (2009) A brief and informationally rich naming system for oligosaccharide motifs of heteroxylans found in plant cell walls. Aust J Chem 62, 533-537.
-
(2009)
Aust J Chem
, vol.62
, pp. 533-537
-
-
Fauré, R.1
Courtin, C.M.2
Delcour, J.A.3
Dumon, C.4
Faulds, C.B.5
Fincher, G.B.6
Fort, S.7
Fry, S.C.8
Halila, S.9
Kabel, M.A.10
-
12
-
-
0037474545
-
Probing the role of a mobile loop in substrate binding and enzyme activity of human salivary amylase
-
DOI 10.1016/S0022-2836(02)01326-8
-
Ramasubbu N, Ragunath C, &, Mishra PJ, (2003) Probing the role of a mobile loop in substrate binding and enzyme activity of human salivary amylase. J Mol Biol 325, 1061-1076. (Pubitemid 36263412)
-
(2003)
Journal of Molecular Biology
, vol.325
, Issue.5
, pp. 1061-1076
-
-
Ramasubbu, N.1
Ragunath, C.2
Mishra, P.J.3
-
13
-
-
3042554260
-
Human salivary α-amylase Trp58 situated at subsite -2 is critical for enzyme activity
-
DOI 10.1111/j.1432-1033.2004.04182.x
-
Ramasubbu N, Ragunath C, Mishra PJ, Thomas LM, Gyémánt G, &, Kandra L, (2004) Human salivary α-amylase Trp58 situated at subsite-2 is critical for enzyme activity. Eur J Biochem 271, 2517-2529. (Pubitemid 38813582)
-
(2004)
European Journal of Biochemistry
, vol.271
, Issue.12
, pp. 2517-2529
-
-
Ramasubbu, N.1
Ragunath, C.2
Mishra, P.J.3
Thomas, L.M.4
Gyemant, G.5
Kandra, L.6
-
14
-
-
33751309082
-
Insights into the "pair of sugar tongs" surface binding site in barley α-amylase isozymes and crystallization of appropriate sugar tongs mutants
-
Tranier S, Deville K, Robert X, Bozonnet S, Haser R, Svensson B, &, Aghajari N, (2005) Insights into the 'pair of sugar tongs' surface binding site in barley α-amylase isozymes and crystallization of appropriate sugar tongs mutants. Biologia 60, 37-46. (Pubitemid 44804895)
-
(2005)
Biologia - Section Cellular and Molecular Biology
, vol.60
, Issue.SUPPL. 16
, pp. 37-46
-
-
Tranier, S.1
Deville, K.2
Robert, X.3
Bozonnet, S.4
Haser, R.5
Svensson, B.6
Aghajari, N.7
-
15
-
-
78650789668
-
Structural and functional analysis of substrate recognition by the 250s loop in amylomaltase from Thermus brockianus
-
Jung J-H, Jung T-Y, Seo D-H, Yoon S-M, Choi H-C, Park BC, Park C-S, &, Woo E-J, (2011) Structural and functional analysis of substrate recognition by the 250s loop in amylomaltase from Thermus brockianus. Proteins: Struct, Funct, Bioinf 79, 633-644.
-
(2011)
Proteins: Struct, Funct, Bioinf
, vol.79
, pp. 633-644
-
-
Jung, J.-H.1
Jung, T.-Y.2
Seo, D.-H.3
Yoon, S.-M.4
Choi, H.-C.5
Park, B.C.6
Park, C.-S.7
Woo, E.-J.8
-
16
-
-
40849106389
-
Structural insights into rice BGlu1 β-glucosidase oligosaccharide hydrolysis and transglycosylation
-
Chuenchor W, Pengthaisong S, Robinson RC, Yuvaniyama J, Oonanant W, Bevan DR, Esen A, Chen C-J, Opassiri R, Svasti J, et al. (2008) Structural insights into rice BGlu1 β-glucosidase oligosaccharide hydrolysis and transglycosylation. J Mol Biol 377, 1200-1215.
-
(2008)
J Mol Biol
, vol.377
, pp. 1200-1215
-
-
Chuenchor, W.1
Pengthaisong, S.2
Robinson, R.C.3
Yuvaniyama, J.4
Oonanant, W.5
Bevan, D.R.6
Esen, A.7
Chen, C.-J.8
Opassiri, R.9
Svasti, J.10
-
17
-
-
70349443443
-
Crystallographic and activity-based evidence for thumb flexibility and its relevance in glycoside hydrolase family 11 xylanases
-
Pollet A, Vandermarliere E, Lammertyn J, Strelkov SV, Delcour JA, &, Courtin CM, (2009) Crystallographic and activity-based evidence for thumb flexibility and its relevance in glycoside hydrolase family 11 xylanases. Proteins: Struct, Funct, Bioinf 77, 395-403.
-
(2009)
Proteins: Struct, Funct, Bioinf
, vol.77
, pp. 395-403
-
-
Pollet, A.1
Vandermarliere, E.2
Lammertyn, J.3
Strelkov, S.V.4
Delcour, J.A.5
Courtin, C.M.6
-
18
-
-
33847020410
-
New insights into the role of the thumb-like loop in GH-11 xylanases
-
Paës G, Tran V, Takahashi M, Boukari I, &, O'Donohue MJ, (2007) New insights into the role of the thumb-like loop in GH-11 xylanases. Protein Eng Des Sel 20, 15-23.
-
(2007)
Protein Eng des Sel
, vol.20
, pp. 15-23
-
-
Paës, G.1
Tran, V.2
Takahashi, M.3
Boukari, I.4
O'Donohue, M.J.5
-
19
-
-
80054978092
-
An extended β7α7 substrate-binding loop is essential for efficient catalysis by 3-deoxy-d-manno-octulosonate 8-phosphate synthase
-
Allison TM, Hutton RD, Jiao W, Gloyne BJ, Nimmo EB, Jameson GB, &, Parker EJ, (2011) An extended β7α7 substrate-binding loop is essential for efficient catalysis by 3-deoxy-d-manno-octulosonate 8-phosphate synthase. Biochemistry 50, 9318-9327.
-
(2011)
Biochemistry
, vol.50
, pp. 9318-9327
-
-
Allison, T.M.1
Hutton, R.D.2
Jiao, W.3
Gloyne, B.J.4
Nimmo, E.B.5
Jameson, G.B.6
Parker, E.J.7
-
20
-
-
0037176836
-
13CO) NMR relaxation and computational molecular dynamics
-
DOI 10.1021/bi011657f
-
13CO) NMR relaxation and computational molecular dynamics. Biochemistry 41, 2655-2666. (Pubitemid 34168934)
-
(2002)
Biochemistry
, vol.41
, Issue.8
, pp. 2655-2666
-
-
Pang, Y.1
Buck, M.2
Zuiderweg, E.R.P.3
-
21
-
-
0034110774
-
Genetic and biochemical characterization of a highly thermostable α-L- arabinofuranosidase from Thermobacillus xylanilyticus
-
DOI 10.1128/AEM.66.4.1734-1736.2000
-
Debeche T, Cummings N, Connerton I, Debeire P, &, O'Donohue MJ, (2000) Genetic and biochemical characterization of a highly thermostable α-l-arabinofuranosidase from Thermobacillus xylanilyticus. Appl Environ Microbiol 66, 1734-1736. (Pubitemid 30185662)
-
(2000)
Applied and Environmental Microbiology
, vol.66
, Issue.4
, pp. 1734-1736
-
-
Debeche, T.1
Cummings, N.2
Connerton, I.3
Debeire, P.4
O'Donohue, M.J.5
-
22
-
-
13844308667
-
An original chemoenzymatic route for the synthesis of β-D- galactofuranosides using an α-l-arabinofuranosidase
-
DOI 10.1016/j.carres.2005.01.016, PII S0008621505000455
-
Rémond C, Plantier-Royon R, Aubry N, &, O'Donohue MJ, (2005) An original chemoenzymatic route for the synthesis of β-d- galactofuranosides using an α-l-arabinofuranosidase. Carbohydr Res 340, 637-644. (Pubitemid 40260909)
-
(2005)
Carbohydrate Research
, vol.340
, Issue.4
, pp. 637-644
-
-
Remond, C.1
Plantier-Royon, R.2
Aubry, N.3
O'Donohue, M.J.4
-
23
-
-
0033553844
-
Characterization of ligand binding by saturation transfer difference NMR spectroscopy
-
DOI 10.1002/(SICI)1521-3773(19990614)38:12<1784::AID-ANIE1784>3.0. CO;2-Q
-
Mayer M, &, Meyer B, (1999) Characterization of ligand binding by saturation transfer difference NMR spectroscopy. Angew Chem Int Ed 38, 1784-1788. (Pubitemid 29290947)
-
(1999)
Angewandte Chemie - International Edition
, vol.38
, Issue.12
, pp. 1784-1788
-
-
Mayer, M.1
Meyer, B.2
-
24
-
-
0037463033
-
NMR spectroscopy techniques for screening and identifying ligand binding to protein receptors
-
DOI 10.1002/anie.200390233
-
Meyer B, &, Peters T, (2003) NMR spectroscopy techniques for screening and identifying ligand binding to protein receptors. Angew Chem Int Ed 42, 864-890. (Pubitemid 36314024)
-
(2003)
Angewandte Chemie - International Edition
, vol.42
, Issue.8
, pp. 864-890
-
-
Meyer, B.1
Peters, T.2
-
25
-
-
35948942349
-
NMR methods for the determination of protein-ligand dissociation constants
-
DOI 10.1016/j.pnmrs.2007.04.001, PII S0079656507000258
-
Fielding L, (2007) NMR methods for the determination of protein-ligand dissociation constants. Prog Nucl Magn Reson Spectrosc 51, 219-242. (Pubitemid 350064300)
-
(2007)
Progress in Nuclear Magnetic Resonance Spectroscopy
, vol.51
, Issue.4
, pp. 219-242
-
-
Fielding, L.1
-
26
-
-
33751000453
-
NMR Analysis of Carbohydrate-Protein Interactions
-
DOI 10.1016/S0076-6879(06)16002-4, PII S0076687906160024, Glycomics
-
Angulo J, Rademacher C, Biet T, Benie AJ, Blume A, Peters H, Palcic M, Parra F, &, Peters T, (2006) NMR analysis of carbohydrate-protein interactions. Methods Enzymol 416, 12-30. (Pubitemid 44750102)
-
(2006)
Methods in Enzymology
, vol.416
, pp. 12-30
-
-
Angulo, J.1
Rademacher, C.2
Biet, T.3
Benie, A.J.4
Blume, A.5
Peters, H.6
Palcic, M.7
Parra, F.8
Peters, T.9
-
27
-
-
77951123284
-
Enzymatic synthesis of oligo-d-galactofuranosides and l-arabinofuranosides: From molecular dynamics to immunological assays
-
Chlubnová I, Filipp D, Spiwok V, Dvořáková H, Daniellou R, Nugier-Chauvin C, Králová B, &, Ferrières V, (2010) Enzymatic synthesis of oligo-d-galactofuranosides and l-arabinofuranosides: from molecular dynamics to immunological assays. Org Biomol Chem 8, 2092-2102.
-
(2010)
Org Biomol Chem
, vol.8
, pp. 2092-2102
-
-
Chlubnová, I.1
Filipp, D.2
Spiwok, V.3
Dvořáková, H.4
Daniellou, R.5
Nugier-Chauvin, C.6
Králová, B.7
Ferrières, V.8
-
28
-
-
27844452938
-
A chemoenzymatic approach for the synthesis of unnatural disaccharides containing D-galacto- or D-fucofuranosides
-
DOI 10.1002/ejoc.200500525
-
Euzen R, Lopez G, Nugier-Chauvin C, Ferrières V, Plusquellec D, Rémond C, &, O'Donohue M, (2005) A chemoenzymatic approach for the synthesis of unnatural disaccharides containing d-galacto- or d-fucofuranosides. Eur J Org Chem 2005, 4860-4869. (Pubitemid 41659450)
-
(2005)
European Journal of Organic Chemistry
, Issue.22
, pp. 4860-4869
-
-
Euzen, R.1
Lopez, G.2
Nugier-Chauvin, C.3
Ferrieres, V.4
Plusquellec, D.5
Remond, C.6
O'Donohue, M.7
-
29
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT
-
Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
-
(1999)
Nucleic Acids Symp ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
30
-
-
2142738304
-
WebLogo: A sequence logo generator
-
DOI 10.1101/gr.849004
-
Crooks GE, Hon G, Chandonia J-M, &, Brenner SE, (2004) WebLogo: a sequence logo generator. Genome Res 14, 1188-1190. (Pubitemid 38811555)
-
(2004)
Genome Research
, vol.14
, Issue.6
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.-M.3
Brenner, S.E.4
-
31
-
-
0037164615
-
Enzymatic synthesis of alkyl arabinofuranosides using a thermostable α-L-arabinofuranosidase
-
DOI 10.1016/S0040-4039(02)02381-X, PII S004040390202381X
-
Rémond C, Ferchichi M, Aubry N, Plantier-Royon R, Portella C, &, O'Donohue MJ, (2002) Enzymatic synthesis of alkyl arabinofuranosides using a thermostable α-l-arabinofuranosidase. Tetrahedron Lett 43, 9653-9655. (Pubitemid 35441121)
-
(2002)
Tetrahedron Letters
, vol.43
, Issue.52
, pp. 9653-9655
-
-
Remond, C.1
Ferchichi, M.2
Aubry, N.3
Plantier-Royon, R.4
Portella, C.5
O'Donohue, M.J.6
-
32
-
-
0034823890
-
Group epitope mapping by saturation transfer difference NMR to identify segments of a ligand in direct contact with a protein receptor
-
DOI 10.1021/ja0100120
-
Mayer M, &, Meyer B, (2001) Group epitope mapping by saturation transfer difference NMR to identify segments of a ligand in direct contact with a protein receptor. J Am Chem Soc 123, 6108-6117. (Pubitemid 32888480)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.25
, pp. 6108-6117
-
-
Mayer, M.1
Meyer, B.2
-
33
-
-
0026951903
-
Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions
-
Piotto M, Saudek V, &, Sklenár V, (1992) Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions. J Biomol NMR 2, 661-665.
-
(1992)
J Biomol NMR
, vol.2
, pp. 661-665
-
-
Piotto, M.1
Saudek, V.2
Sklenár, V.3
-
34
-
-
77954346685
-
Ligand-receptor binding affinities from saturation transfer difference (STD) NMR spectroscopy: The binding isotherm of STD initial growth rates
-
Angulo J, Enríquez-Navas PM, &, Nieto PM, (2010) Ligand-receptor binding affinities from saturation transfer difference (STD) NMR spectroscopy: the binding isotherm of STD initial growth rates. Chem Eur J 16, 7803-7812.
-
(2010)
Chem Eur J
, vol.16
, pp. 7803-7812
-
-
Angulo, J.1
Enríquez-Navas, P.M.2
Nieto, P.M.3
-
35
-
-
83455170264
-
-
University of California, San Francisco, CA.
-
Case DA, Darden TA, Cheatham TE III, Simmerling CL, Wang J, Duke RE, Luo R, Walker RC, Zhang W, Merz KM, et al. (2010) AMBER11. University of California, San Francisco, CA.
-
(2010)
AMBER11
-
-
Case, D.A.1
Darden, T.A.2
Cheatham Iii, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Walker, R.C.8
Zhang, W.9
Merz, K.M.10
-
36
-
-
0242663237
-
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
-
Duan Y, Wu C, Chowdhury S, Lee MC, Xiong G, Zhang W, Yang R, Cieplak P, Luo R, Lee T, et al. (2003) A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. J Comput Chem 24, 1999-2003.
-
(2003)
J Comput Chem
, vol.24
, pp. 1999-2003
-
-
Duan, Y.1
Wu, C.2
Chowdhury, S.3
Lee, M.C.4
Xiong, G.5
Zhang, W.6
Yang, R.7
Cieplak, P.8
Luo, R.9
Lee, T.10
-
37
-
-
2442480826
-
Distinguish Protein Decoys by Using a Scoring Function Based on a New AMBER Force Field, Short Molecular Dynamics Simulations, and the Generalized Born Solvent Model
-
DOI 10.1002/prot.10470
-
Lee MC, &, Duan Y, (2004) Distinguish protein decoys by using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent model. Proteins: Struct, Funct, Bioinf 55, 620-634. (Pubitemid 38620087)
-
(2004)
Proteins: Structure, Function and Genetics
, vol.55
, Issue.3
, pp. 620-634
-
-
Lee, M.C.1
Duan, Y.2
-
38
-
-
39049147617
-
GLYCAM06: A generalizable biomolecular force field. carbohydrates
-
DOI 10.1002/jcc.20820
-
Kirschner KN, Yongye AB, Tschampel SM, Gonzalez-Outeirino J, Daniels CR, Foley BL, &, Woods RJ, (2008) GLYCAM06: a generalizable biomolecular force field. Carbohydrate. J Comput Chem 29, 622-655. (Pubitemid 351238844)
-
(2008)
Journal of Computational Chemistry
, vol.29
, Issue.4
, pp. 622-655
-
-
Kirschner, K.N.1
Yongye, A.B.2
Tschampel, S.M.3
Gonzalez-Outeirino, J.4
Daniels, C.R.5
Foley, B.L.6
Woods, R.J.7
-
39
-
-
84952104504
-
An analysis of the accuracy of Langevin and molecular dynamics algorithm
-
Pastor RW, Brooks BR, &, Szabo A, (1988) An analysis of the accuracy of Langevin and molecular dynamics algorithm. Mol Phys 65, 1409-1719.
-
(1988)
Mol Phys
, vol.65
, pp. 1409-1719
-
-
Pastor, R.W.1
Brooks, B.R.2
Szabo, A.3
-
40
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen HJC, Postma JPM, van Gunsteren WF, DiNola A, &, Haak JR, (1984) Molecular dynamics with coupling to an external bath. J Chem Phys 81, 3684-3690.
-
(1984)
J Chem Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
41
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann U, Perera L, Berkowitz ML, Darden T, Lee H, &, Pedersen LG, (1995) A smooth particle mesh Ewald method. J Chem Phys 103, 8577-8593.
-
(1995)
J Chem Phys
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
42
-
-
33646940952
-
Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert JP, Ciccotti G, &, Berendsen HJC, (1977) Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Chem 23, 327-341.
-
(1977)
J Comput Chem
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
43
-
-
0015511563
-
Conformational analysis of the sugar ring in nucleosides and nucleotides. New description using the concept of pseudorotation
-
Altona C, &, Sundaralingam M, (1972) Conformational analysis of the sugar ring in nucleosides and nucleotides. New description using the concept of pseudorotation. J Am Chem Soc 94, 8205-8212.
-
(1972)
J Am Chem Soc
, vol.94
, pp. 8205-8212
-
-
Altona, C.1
Sundaralingam, M.2
-
44
-
-
0000408363
-
Approximate atomic surfaces from linear combinations of pairwise overlaps (LCPO)
-
Weiser J, Shenkin PS, &, Still WC, (1999) Approximate atomic surfaces from linear combinations of pairwise overlaps (LCPO). J Comput Chem 20, 217-230. (Pubitemid 129653030)
-
(1999)
Journal of Computational Chemistry
, vol.20
, Issue.2
, pp. 217-230
-
-
Weiser, J.1
Shenkin, P.S.2
Still, W.C.3
-
45
-
-
0028922586
-
LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
-
Wallace AC, Laskowski RA, &, Thornton JM, (1995) LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions. Protein Eng Des Sel 8, 127-134.
-
(1995)
Protein Eng des Sel
, vol.8
, pp. 127-134
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
|