메뉴 건너뛰기




Volumn 20, Issue 9, 2011, Pages 1632-1637

Structure of a novel thermostable GH51 α-L-arabinofuranosidase from Thermotoga petrophila RKU-1

Author keywords

Glycosyl hydrolase family 51; Oligomerization; Structure; Thermostable L arabinofuranosidase; Thermotoga petrophila RKU 1

Indexed keywords

ALPHA ARABINOFURANOSIDASE; DIMER; GH 51 ALPHA LEVO ARABINOFURANOSIDASE; UNCLASSIFIED DRUG;

EID: 84860389042     PISSN: 09618368     EISSN: 1469896X     Source Type: Journal    
DOI: 10.1002/pro.693     Document Type: Article
Times cited : (23)

References (31)
  • 1
    • 0034253281 scopus 로고    scopus 로고
    • Alpha-L-arabinofuranosidases: Biochemistry, molecular biology and application in biotechnology
    • Saha B.C. (2000) Alpha-L-arabinofuranosidases: Biochemistry, molecular biology and application in biotechnology. Biotechnol Adv 18:403-423.
    • (2000) Biotechnol Adv , vol.18 , pp. 403-423
    • Saha, B.C.1
  • 2
    • 0035199524 scopus 로고    scopus 로고
    • Aspergillus enzymes involved in degradation of plant cell wall polysaccharides
    • DOI 10.1128/MMBR.65.4.497-522.2001
    • De Vries R.P., Visser J. (2001) Aspergillus enzymes involved in degradation of plant cell wall polysaccharides. Microbiol Mol Biol Rev 65:497-522. (Pubitemid 33123516)
    • (2001) Microbiology and Molecular Biology Reviews , vol.65 , Issue.4 , pp. 497-522
    • De Vries, R.P.1    Visser, J.2
  • 3
    • 0038434063 scopus 로고    scopus 로고
    • Substrate specificity of the alpha-L-arabinofuranosidase from Rhizomucor pusillus HHT-1
    • DOI 10.1016/S0008-6215(03)00203-9
    • Rahman A.K.M.S., Kato K., Kawai S., Takamizawa K. (2003) Substrate specificity of the alpha-L-arabinofuranosidase from Rhizomucor pusillus HHT-1. Carbohydr Res 338:1469-1476. (Pubitemid 36776299)
    • (2003) Carbohydrate Research , vol.338 , Issue.14 , pp. 1469-1476
    • Rahman, A.K.M.S.1    Kato, K.2    Kawai, S.3    Takamizawa, K.4
  • 4
    • 0031975343 scopus 로고    scopus 로고
    • Purification and characterization of a novel thermostable alpha-L- arabinofuranosidase from a color-variant strain of Aureobasidium pullulans
    • Saha B.C., Bothast R.J. (1998) Purification and characterization of a novel thermostable alpha-L-arabinofuranosidase from a color-variant strain of Aureobasidium pullulans. Appl Environ Microbiol 64:216-220. (Pubitemid 28040316)
    • (1998) Applied and Environmental Microbiology , vol.64 , Issue.1 , pp. 216-220
    • Saha, B.C.1    Bothast, R.J.2
  • 5
    • 0037070548 scopus 로고    scopus 로고
    • The identification of the acid-base catalyst of alpha-arabinofuranosidase from Geobacillus stearothermophilus T-6, a family 51 glycoside hydrolase
    • DOI 10.1016/S0014-5793(02)02343-8, PII S0014579302023438
    • Shallom D., Belakhov V., Solomon D., Gilead-Gropper S., Baasov T., Shoham G., Shoham Y. (2002) The identification of the acid-base catalyst of alpha-arabinofuranosidase from Geobacillus stearothermophilus T-6, a family 51 glycoside hydrolase. FEBS Lett 514:163-167. (Pubitemid 34273932)
    • (2002) FEBS Letters , vol.514 , Issue.2-3 , pp. 163-167
    • Shallom, D.1    Belakhov, V.2    Solomon, D.3    Gilead-Gropper, S.4    Baasov, T.5    Shoham, G.6    Shoham, Y.7
  • 6
    • 0035983948 scopus 로고    scopus 로고
    • Gibberellic acid, synthetic auxins, and ethylene differentially modulate alpha-L-Arabinofuranosidase activities in antisense 1-aminocyclopropane-1- carboxylic acid synthase tomato pericarp discs
    • DOI 10.1104/pp.001180
    • Sozzi G.O., Greve L.C., Prody G.A., Labavitch J.M. (2002) Gibberellic acid, synthetic auxins, and ethylene differentially modulate alpha-L-Arabinofuranosidase activities in antisense 1-aminocyclopropane-1- carboxylic acid synthase tomato pericarp discs. Plant Physiol 129:1330-1340. (Pubitemid 34801101)
    • (2002) Plant Physiology , vol.129 , Issue.3 , pp. 1330-1340
    • Sozzi, G.O.1    Greve, L.C.2    Prody, G.A.3    Labavitch, J.M.4
  • 7
    • 0029739169 scopus 로고    scopus 로고
    • Cloning of genes encoding alpha-L-arabinofuranosidase and beta-xylosidase from Trichoderma reesei by expression in Saccharomyces cerevisiae
    • Margolles-Clark E., Tenkanen M., Nakari-Setälä T., Penttilä M. (1996) Cloning of genes encoding alpha-L-arabinofuranosidase and beta-xylosidase from Trichoderma reesei by expression in Saccharomyces cerevisiae. Appl Environ Microbiol 62:3840-3846. (Pubitemid 26329620)
    • (1996) Applied and Environmental Microbiology , vol.62 , Issue.10 , pp. 3840-3846
    • Margolles-Clark, E.1    Tenkanen, M.2    Nakari-Setala, T.3    Penttila, M.4
  • 8
    • 0035826292 scopus 로고    scopus 로고
    • A novel chitosan derivative to immobilize alpha-L-rhamnopyranosidase from Aspergillus niger for application in beverage technologies
    • DOI 10.1016/S0141-0229(00)00340-9, PII S0141022900003409
    • Spagna G., Barbagallo R.N., Casarini D., Pifferi P.G. (2001) A novel chitosan derivative to immobilize alpha-L-rhamnopyranosidase from Aspergillus niger for application in beverage technologies. Enzyme Microb Technol 28:427-438. (Pubitemid 32193836)
    • (2001) Enzyme and Microbial Technology , vol.28 , Issue.4-5 , pp. 427-438
    • Spagna, G.1    Barbagallo, R.N.2    Casarini, D.3    Pifferi, P.G.4
  • 9
    • 0036211896 scopus 로고    scopus 로고
    • Purification and characterization of thermostable endo-1,5-alpha-L- arabinase from a strain of Bacillus thermodenitrificans
    • DOI 10.1128/AEM.68.4.1639-1646.2002
    • Takao M., Akiyama K., Sakai T. (2002) Purification and characterization of thermostable endo-1,5-alpha-L-arabinase from a strain of Bacillus thermodenitrificans. Appl Environ Microbiol 68:1639-1646. (Pubitemid 34279969)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.4 , pp. 1639-1646
    • Takao, M.1    Akiyama, K.2    Sakai, T.3
  • 11
    • 0034258016 scopus 로고    scopus 로고
    • Optimisation of culture medium and conditions for alpha-L- arabinofuranosidase production by the extreme thermophilic eubacterium Rhodothermus marinus
    • DOI 10.1016/S0141-0229(00)00229-5, PII S0141022900002295
    • Gomes J., Gomes I.I., Terler K., Gubala N., Ditzelmüller G., Steiner W. (2000) Optimisation of culture medium and conditions for alpha-L-Arabinofuranosidase production by the extreme thermophilic eubacterium Rhodothermus marinus. Enzyme Microb Technol 27:414-422. (Pubitemid 30628449)
    • (2000) Enzyme and Microbial Technology , vol.27 , Issue.6 , pp. 414-422
    • Gomes, J.1    Gomes, I.2    Terler, K.3    Gubala, N.4    Ditzelmuller, G.5    Steiner, W.6
  • 12
    • 0034682041 scopus 로고    scopus 로고
    • Cloning, sequencing, and characterization of the bifunctional xylosidase-arabinosidase from the anaerobic thermophile Thermoanaerobacter ethanolicus
    • DOI 10.1016/S0378-1119(00)00106-2, PII S0378111900001062
    • Mai V., Wiegel J., Lorenz W.W. (2000) Cloning, sequencing, and characterization of the bifunctional xylosidasearabinosidase from the anaerobic thermophile Thermoanaerobacter ethanolicus. Gene 247:137-143. (Pubitemid 30203135)
    • (2000) Gene , vol.247 , Issue.1-2 , pp. 137-143
    • Mai, V.1    Wiegel, J.2    Lorenz, W.W.3
  • 13
    • 3142724725 scopus 로고    scopus 로고
    • Synthesis of pentose-containing disaccharides using a thermostable alpha-L-arabinofuranosidase
    • DOI 10.1016/j.carres.2004.04.017, PII S0008621504001910
    • Rémond C., Plantier-Royon R., Aubry N., Maes E., Bliard C., O'Donohue M.J. (2004) Synthesis of pentose-containing disaccharides using a thermostable alpha-L-arabinofuranosidase. Carbohydr Res 339:2019-2025. (Pubitemid 38917044)
    • (2004) Carbohydrate Research , vol.339 , Issue.11 , pp. 2019-2025
    • Remond, C.1    Plantier-Royon, R.2    Aubry, N.3    Maes, E.4    Bliard, C.5    O'Donohue, M.J.6
  • 14
    • 0037623814 scopus 로고    scopus 로고
    • Hemicellulose bioconversion
    • Saha B.C. (2003) Hemicellulose bioconversion. J Ind Microbiol Biotechnol 30:279-291.
    • (2003) J Ind Microbiol Biotechnol , vol.30 , pp. 279-291
    • Saha, B.C.1
  • 15
    • 0029659518 scopus 로고    scopus 로고
    • Keratin degradation by Fervidobacterium pennavorans, a novel thermophilic anaerobic species of the order Thermotogales
    • Friedrich A.B., Antranikian G. (1996) Keratin degradation by Fervidobacterium pennavorans, a novel thermophilic anaerobic species of the order Thermotogales. Appl Environ Microbiol 62:2875-2882.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2875-2882
    • Friedrich, A.B.1    Antranikian, G.2
  • 16
    • 0028088841 scopus 로고
    • The biological degradation of cellulose
    • DOI 10.1016/0168-6445(94)90099-X
    • Béguin P., Aubert J.P. (1994) The biological degradation of cellulose. FEMS Microbiol Rev 13:25-58. (Pubitemid 24051006)
    • (1994) FEMS Microbiology Reviews , vol.13 , Issue.1 , pp. 25-58
    • Beguin, P.1    Aubert, J.-P.2
  • 17
    • 0034815472 scopus 로고    scopus 로고
    • Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan
    • Takahata Y., Nishijima M., Hoaki T., Maruyama T. (2001) Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan. Int J Syst Evol Microbiol 51:1901-1909. (Pubitemid 32899229)
    • (2001) International Journal of Systematic and Evolutionary Microbiology , vol.51 , Issue.5 , pp. 1901-1909
    • Takahata, Y.1    Nishijima, M.2    Hoaki, T.3    Maruyama, T.4
  • 19
    • 17644434949 scopus 로고    scopus 로고
    • Crystal structure and snapshots along the reaction pathway of a family 51 alpha-L-arabinofuranosidase
    • DOI 10.1093/emboj/cdg494
    • Hövel K., Shallom D., Niefind K., Belakhov V., Shoham G., Baasov T., Shoham Y., Schomburg D. (2003) Crystal structure and snapshots along the reaction pathway of a family 51 alpha-L-arabinofuranosidase. EMBO J 22:4922-4932. (Pubitemid 37222014)
    • (2003) EMBO Journal , vol.22 , Issue.19 , pp. 4922-4932
    • Hovel, K.1    Shallom, D.2    Niefind, K.3    Belakhov, V.4    Shoham, G.5    Baasov, T.6    Shoham, Y.7    Schomburg, D.8
  • 20
    • 33645559423 scopus 로고    scopus 로고
    • Structural insight into the ligand specificity of a thermostable family 51 arabinofuranosidase, Araf51, from Clostridium thermocellum
    • Taylor E.J., Smith N.L., Turkenburg J.P., D'Souza S., Gilbert H.J., Davies G.J. (2006) Structural insight into the ligand specificity of a thermostable family 51 arabinofuranosidase, Araf51, from Clostridium thermocellum. Biochem J 395:31-37.
    • (2006) Biochem J , vol.395 , pp. 31-37
    • Taylor, E.J.1    Smith, N.L.2    Turkenburg, J.P.3    D'Souza, S.4    Gilbert, H.J.5    Davies, G.J.6
  • 21
    • 47249161669 scopus 로고    scopus 로고
    • The structure of the complex between a branched pentasaccharide andThermobacillus xylanilyticus GH-51 arabinofuranosidase reveals xylan-binding determinants and induced fit
    • Paës G, Skov LK, O'Donohue MJ, Rémond C, Kastrup JS, Gajhede M, Mirza O (2008) The structure of the complex between a branched pentasaccharide andThermobacillus xylanilyticus GH-51 arabinofuranosidase reveals xylan-binding determinants and induced fit. Biochemistry 47:7441-7451.
    • (2008) Biochemistry , vol.47 , pp. 7441-7451
    • Paës, G.1    Skov, L.K.2    O'Donohue, M.J.3    Rémond, C.4    Kastrup, J.S.5    Gajhede, M.6    Mirza, O.7
  • 22
    • 0026910457 scopus 로고
    • Determination of the regularization parameter in indirect-transform methods using perceptual criteria
    • Svergun D.I. (1992) Determination of the regularization parameter in indirect-transform methods using perceptual criteria. J Appl Cryst 25:495-503.
    • (1992) J Appl Cryst , vol.25 , pp. 495-503
    • Svergun, D.I.1
  • 23
    • 0033001996 scopus 로고    scopus 로고
    • Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing
    • Svergun D.I. (1999) Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing. Biophys J 76:2879-2886.
    • (1999) Biophys J , vol.76 , pp. 2879-2886
    • Svergun, D.I.1
  • 24
    • 0037701585 scopus 로고    scopus 로고
    • Uniqueness of ab initio shape determination in small-angle scattering
    • Volkov V.V., Svergun D.I. (2003) Uniqueness of ab initio shape determination in small-angle scattering. J Appl Cryst 36:860-864.
    • (2003) J Appl Cryst , vol.36 , pp. 860-864
    • Volkov, V.V.1    Svergun, D.I.2
  • 25
    • 0029185933 scopus 로고
    • CRYSOL - A program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates
    • DOI 10.1107/S0021889895007047
    • Svergun D.I., Barberato C., Koch M.H.J. (1995) CRYSOL - a program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates. J Appl Cryst 28:768-773. (Pubitemid 3014671)
    • (1995) Journal of Applied Crystallography , vol.28 , Issue.6 , pp. 768-773
    • Svergun, D.1    Barberato, C.2    Koch, M.H.3
  • 26
    • 0035124442 scopus 로고    scopus 로고
    • Automated matching of high- and low-resolution structural models
    • DOI 10.1107/S0021889800014126
    • Kozin M.B., Svergun D.I. (2001) Automated matching of high- and low-resolution structural models. J Appl Cryst 34:33-41. (Pubitemid 32151714)
    • (2001) Journal of Applied Crystallography , vol.34 , Issue.1 , pp. 33-41
    • Kozin, M.B.1    Svergun, D.I.2
  • 27
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • DOI 10.1016/S0076-6879(97)76066-X
    • Otwinowski Z., Minor W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307-326. (Pubitemid 27085611)
    • (1997) Methods in Enzymology , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.