-
2
-
-
0001909483
-
Structural features and evolutionary relationships in the α-amylase family
-
Ohnishi, M., Hayashi, T., Ishima, S. & Kuriki, T., eds, The Japanese Scientific Societies Press, Tokyo, Japan
-
Janecek, S. (2000) Structural features and evolutionary relationships in the α-amylase family. In Glycoenzymes (Ohnishi, M., Hayashi, T., Ishima, S. & Kuriki, T., eds), pp. 19-54. The Japanese Scientific Societies Press, Tokyo, Japan.
-
(2000)
Glycoenzymes
, pp. 19-54
-
-
Janecek, S.1
-
3
-
-
0028429952
-
Protein engineering in the alpha-amylase family: Catalytic mechanism, substrate specificity, and stability
-
Svensson, B. (1994) Protein engineering in the alpha-amylase family: catalytic mechanism, substrate specificity, and stability. Plant Mol. Biol. 25, 141-157.
-
(1994)
Plant Mol. Biol.
, vol.25
, pp. 141-157
-
-
Svensson, B.1
-
4
-
-
0023841829
-
Regional distant sequence homology between amylases, α-glucosidases and transglucanosylases
-
Svensson, B. (1988) Regional distant sequence homology between amylases, α-glucosidases and transglucanosylases. FEBS Lett. 230, 72-76.
-
(1988)
FEBS Lett.
, vol.230
, pp. 72-76
-
-
Svensson, B.1
-
5
-
-
0024514666
-
A super-secondary structure predicted to be common to several α-1,4-D-glucan-cleaving enzymes
-
MacGregor, E.A. & Svensson, B. (1989) A super-secondary structure predicted to be common to several α-1,4-D-glucan-cleaving enzymes. Biochem. J. 259, 145-152.
-
(1989)
Biochem. J.
, vol.259
, pp. 145-152
-
-
MacGregor, E.A.1
Svensson, B.2
-
6
-
-
0028021627
-
Sequence similarities and evolutionary relationships of microbial, plant and animal α-amylases
-
Janecek, S. (1994) Sequence similarities and evolutionary relationships of microbial, plant and animal α-amylases. Eur. J. Biochem. 224, 519-224.
-
(1994)
Eur. J. Biochem.
, vol.224
, pp. 519-1224
-
-
Janecek, S.1
-
7
-
-
0025284257
-
The evolution of alpha/beta barrel enzymes
-
Farber, G.K. & Petsko, G.A. (1990) The evolution of alpha/beta barrel enzymes. Trends Biochem. Sci. 15, 228-234.
-
(1990)
Trends Biochem. Sci.
, vol.15
, pp. 228-234
-
-
Farber, G.K.1
Petsko, G.A.2
-
8
-
-
0029111443
-
The structure of human pancreatic alpha-amylase at 1.8 Angstrom resolution and comparisons with related enzymes
-
Brayer, G.D., Luo, Y. & Withers, S.G. (1995) The structure of human pancreatic alpha-amylase at 1.8 Angstrom resolution and comparisons with related enzymes. Protein Sci. 4, 1730-1742.
-
(1995)
Protein Sci.
, vol.4
, pp. 1730-1742
-
-
Brayer, G.D.1
Luo, Y.2
Withers, S.G.3
-
9
-
-
0001631469
-
Structure of human salivary α-amylase at 1.6 Angstrom resolution: Implications for its role in the oral cavity
-
Ramasubbu, N., Paloth, V., Luo, Y., Brayer, G.D. & Levine, M.J. (1996) Structure of human salivary α-amylase at 1.6 Angstrom resolution: implications for its role in the oral cavity. Acta Crystallogr. D52, 435-446.
-
(1996)
Acta Crystallogr.
, vol.D52
, pp. 435-446
-
-
Ramasubbu, N.1
Paloth, V.2
Luo, Y.3
Brayer, G.D.4
Levine, M.J.5
-
10
-
-
0027296794
-
Structure and molecular model refinement of pig pancreatic α-amylase at 2.1 Angstrom resolution
-
Qian, M., Haser, R. & Payan, F. (1993) Structure and molecular model refinement of pig pancreatic α-amylase at 2.1 Angstrom resolution. J. Mol. Biol. 231, 785-799.
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 785-799
-
-
Qian, M.1
Haser, R.2
Payan, F.3
-
11
-
-
0028198814
-
The active center of a mammalian alpha-amylase: Structure of the complex of a pancreatic α-amylase with a carbohydrate inhibitor refined to 2.2-Angstrom resolution
-
Qian, M., Haser, R., Buisson, G., Duee, E. & Payan, F. (1994) The active center of a mammalian alpha-amylase: structure of the complex of a pancreatic α-amylase with a carbohydrate inhibitor refined to 2.2-Angstrom resolution. Biochemistry 33, 6284-6294.
-
(1994)
Biochemistry
, vol.33
, pp. 6284-6294
-
-
Qian, M.1
Haser, R.2
Buisson, G.3
Duee, E.4
Payan, F.5
-
12
-
-
0034712653
-
Subsite mapping of the human pancreatic alpha-amylase active site through structural, kinetic, and mutagenesis techniques
-
Brayer, G.D., Sidhu, G., Maurus, R., Rydberg, E.H., Braun, C., Wang, Y., Nguyen, N.T., Overall, C.M. & Withers, S.G. (2000) Subsite mapping of the human pancreatic alpha-amylase active site through structural, kinetic, and mutagenesis techniques. Biochemistry 39, 4778-4791.
-
(2000)
Biochemistry
, vol.39
, pp. 4778-4791
-
-
Brayer, G.D.1
Sidhu, G.2
Maurus, R.3
Rydberg, E.H.4
Braun, C.5
Wang, Y.6
Nguyen, N.T.7
Overall, C.M.8
Withers, S.G.9
-
13
-
-
0037474545
-
Probing the role of a mobile loop in substrate binding and enzyme activity of human salivary amylase
-
Ramasubbu, N., Ragunath, C. & Mishra, P.J. (2003) Probing the role of a mobile loop in substrate binding and enzyme activity of human salivary amylase. J. Mol. Biol. 325, 1061-1076.
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 1061-1076
-
-
Ramasubbu, N.1
Ragunath, C.2
Mishra, P.J.3
-
14
-
-
0031015902
-
Nomenclature for sugar-binding subsites in glycosyl hydrolases
-
Davies, G.J., Wilson, K.S. & Henrissat, B. (1997) Nomenclature for sugar-binding subsites in glycosyl hydrolases. Biochem. J. 321, 557-559.
-
(1997)
Biochem. J.
, vol.321
, pp. 557-559
-
-
Davies, G.J.1
Wilson, K.S.2
Henrissat, B.3
-
15
-
-
0023782296
-
Investigation of the active site of human salivary alpha-amylase from the modes of action on modified maltooligosaccharides
-
Nagamine, Y., Omichi, K. & Ikenaka, T. (1988) Investigation of the active site of human salivary alpha-amylase from the modes of action on modified maltooligosaccharides. J. Biochem. (Tokyo) 104, 409-415.
-
(1988)
J. Biochem. (Tokyo)
, vol.104
, pp. 409-415
-
-
Nagamine, Y.1
Omichi, K.2
Ikenaka, T.3
-
16
-
-
0025976111
-
Examination of aglycone-binding site of human salivary alpha-amylase by means of transglycosylation reactions
-
Omichi, K., Hase, S. & Ikenaka, T. (1991) Examination of aglycone-binding site of human salivary alpha-amylase by means of transglycosylation reactions. J. Biochem. (Tokyo) 109, 410-415.
-
(1991)
J. Biochem. (Tokyo)
, vol.109
, pp. 410-415
-
-
Omichi, K.1
Hase, S.2
Ikenaka, T.3
-
17
-
-
0038694855
-
Subsite mapping of human salivary alpha-amylase and the mutant Y151M
-
Kandra, L., Gyemant, G., Remenyik, J., Ragunath, C. & Ramasubbu, N. (2003) Subsite mapping of human salivary alpha-amylase and the mutant Y151M. FEBS Lett. 544, 194-198.
-
(2003)
FEBS Lett.
, vol.544
, pp. 194-198
-
-
Kandra, L.1
Gyemant, G.2
Remenyik, J.3
Ragunath, C.4
Ramasubbu, N.5
-
18
-
-
0035148599
-
Evolution of alpha-amylases: Architectural features and key residues in the stabilization of the (beta/alpha) (8) scaffold
-
Pujadas, G. & Palau, J. (2001) Evolution of alpha-amylases: architectural features and key residues in the stabilization of the (beta/alpha) (8) scaffold. Mol. Biol. Evol. 18, 38-54.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 38-54
-
-
Pujadas, G.1
Palau, J.2
-
19
-
-
0036514613
-
Expression, characterization, and biochemical properties of recombinant human salivary amylase
-
Ragunath, C., Sundar, K. & Ramasubbu, N. (2002) Expression, characterization, and biochemical properties of recombinant human salivary amylase. Protein Exp. Purif. 24, 202-211.
-
(2002)
Protein Exp. Purif.
, vol.24
, pp. 202-211
-
-
Ragunath, C.1
Sundar, K.2
Ramasubbu, N.3
-
20
-
-
0036297830
-
The mechanism of salivary amylase hydrolysis: Role of residues at subsite S2′
-
Mishra, P.J., Ragunath, C. & Ramasubbu, N. (2002) The mechanism of salivary amylase hydrolysis: role of residues at subsite S2′. Biochem. Biophys. Res. Commun. 292, 468-473.
-
(2002)
Biochem. Biophys. Res. Commun.
, vol.292
, pp. 468-473
-
-
Mishra, P.J.1
Ragunath, C.2
Ramasubbu, N.3
-
21
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli, U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
22
-
-
0024386609
-
Characterization of salivary alpha-amylase binding to Streptococcus sanguis
-
Scannapieco, F.A., Bergey, E.J., Reddy, M.S. & Levine, M.J. (1989) Characterization of salivary alpha-amylase binding to Streptococcus sanguis. Infect. Immun. 57, 2853-2863.
-
(1989)
Infect. Immun.
, vol.57
, pp. 2853-2863
-
-
Scannapieco, F.A.1
Bergey, E.J.2
Reddy, M.S.3
Levine, M.J.4
-
23
-
-
33748037939
-
Amylases, α and β
-
Bernfeld, P. (1955) Amylases, α and β. Methods Enzymol. 1, 149-159.
-
(1955)
Methods Enzymol.
, vol.1
, pp. 149-159
-
-
Bernfeld, P.1
-
24
-
-
0343487716
-
Synthesis of chromogenic substrates of alpha-amylases on a cyclodextrin basis
-
Farkas, E., Janossy, L., Harangi, J., Kandra, L. & Liptak, A. (1997) Synthesis of chromogenic substrates of alpha-amylases on a cyclodextrin basis. Carbohydr. Res. 303, 407-415.
-
(1997)
Carbohydr. Res.
, vol.303
, pp. 407-415
-
-
Farkas, E.1
Janossy, L.2
Harangi, J.3
Kandra, L.4
Liptak, A.5
-
25
-
-
0025938281
-
Crystallization and preliminary X-ray diffraction studies of human salivary alpha-amylase
-
Ramasubbu, N., Bhandary, K.K., Scannapieco, F.A. & Levine, M.J. (1991) Crystallization and preliminary X-ray diffraction studies of human salivary alpha-amylase. Proteins 11, 230-232.
-
(1991)
Proteins
, vol.11
, pp. 230-232
-
-
Ramasubbu, N.1
Bhandary, K.K.2
Scannapieco, F.A.3
Levine, M.J.4
-
26
-
-
0031059866
-
Processing of X-ray crystallographic data in oscillation mode
-
Otwinowski, Z. & Minor, W. (1997) Processing of X-ray crystallographic data in oscillation mode. Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
27
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A.T., Adams, P.D., Clore, G.M., DeLano, W.L., Gros, P., Grosse-Kunstleve, R.W., Jiang, J.S., Kuszewski, J., Nilges, M., Pannu, N.S., Read, R.J., Rice, L.M., Simonson, T. & Warren, G.L. (1998) Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Cryst. D54, 905-921.
-
(1998)
Acta Cryst.
, vol.D54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
28
-
-
0022333120
-
Interactive computer graphics: FRODO
-
Jones, T.A. (1985) Interactive computer graphics: FRODO. Methods Enzymol. 115, 157-171.
-
(1985)
Methods Enzymol.
, vol.115
, pp. 157-171
-
-
Jones, T.A.1
-
29
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T.A., Zou, J.Y., Cowan, S.W. & Kjeldgaard, M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Cryst. A47, 110-119.
-
(1991)
Acta Cryst.
, vol.A47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
30
-
-
0028103275
-
The CCP4 Suite: Programs for protein crystallography
-
CCP4. (1994) The CCP4 Suite: programs for protein crystallography. Acta Cryst. D50, 760-763.
-
(1994)
Acta Cryst.
, vol.D50
, pp. 760-763
-
-
-
31
-
-
0000127585
-
Automated refinement of protein models
-
Lamzin, V.S. & Wilson, K.S. (1993) Automated refinement of protein models. Acta Cryst. D49, 129-149.
-
(1993)
Acta Cryst.
, vol.D49
, pp. 129-149
-
-
Lamzin, V.S.1
Wilson, K.S.2
-
32
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R.A., MacArthur, M.W., Moss, D.S. & Thornton, J.M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26, 283-291.
-
(1993)
J. Appl. Cryst.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
33
-
-
0037006989
-
Mechanistic analyses of catalysis in human pancreatic alpha-amylase: Detailed kinetic and structural studies of mutants of three conserved carboxylic acids
-
Rydberg, E.H., Li, C., Maurus, R., Overall, C.M., Brayer, G.D. & Withers, S.G. (2002) Mechanistic analyses of catalysis in human pancreatic alpha-amylase: detailed kinetic and structural studies of mutants of three conserved carboxylic acids. Biochemistry 41, 4492-4502.
-
(2002)
Biochemistry
, vol.41
, pp. 4492-4502
-
-
Rydberg, E.H.1
Li, C.2
Maurus, R.3
Overall, C.M.4
Brayer, G.D.5
Withers, S.G.6
-
34
-
-
0017189067
-
Subsite mapping of enzymes. Application of the depolymerase computer model to two alpha-amylases
-
Allen, J.D. & Thoma, J.A. (1976) Subsite mapping of enzymes. Application of the depolymerase computer model to two alpha-amylases. Biochem. J. 159, 121-132.
-
(1976)
Biochem. J.
, vol.159
, pp. 121-132
-
-
Allen, J.D.1
Thoma, J.A.2
-
35
-
-
0033082994
-
The roles of histidine residues at the starch-binding site in streptococcal-binding activities of human salivary amylase
-
Tseng, C.C., Miyamoto, M., Ramalingam, K., Hemavathy, K.C., Levine, M.J. & Ramasubbu, N. (1999) The roles of histidine residues at the starch-binding site in streptococcal-binding activities of human salivary amylase. Arch. Oral Biol. 44, 119-127.
-
(1999)
Arch. Oral Biol.
, vol.44
, pp. 119-127
-
-
Tseng, C.C.1
Miyamoto, M.2
Ramalingam, K.3
Hemavathy, K.C.4
Levine, M.J.5
Ramasubbu, N.6
-
36
-
-
0028966756
-
Carbohydrate binding sites in a pancreatic alpha-amylase-substrate complex, derived from X-ray structure analysis at 2.1 Angstrom resolution
-
Qian, M., Haser, R. & Payan, F. (1995) Carbohydrate binding sites in a pancreatic alpha-amylase-substrate complex, derived from X-ray structure analysis at 2.1 Angstrom resolution. Protein Sci. 4, 747-755.
-
(1995)
Protein Sci.
, vol.4
, pp. 747-755
-
-
Qian, M.1
Haser, R.2
Payan, F.3
-
37
-
-
0032562777
-
Molecular structure of a barley alpha-amylase-inhibitor complex: Implications for starch binding and catalysis
-
Kadziola, A., Sogaard, M., Svensson, B. & Haser, R. (1998) Molecular structure of a barley alpha-amylase-inhibitor complex: implications for starch binding and catalysis. J. Mol. Biol. 278, 205-217.
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 205-217
-
-
Kadziola, A.1
Sogaard, M.2
Svensson, B.3
Haser, R.4
-
38
-
-
0035954408
-
Enzyme-catalyzed condensation reaction in a mammalian alpha-amylase: High-resolution structural analysis of an enzyme-inhibitor complex
-
Qian, M., Nahoum, V., Bonicel, J., Bischoff, H., Henrissat, B. & Payan, F. (2001) Enzyme-catalyzed condensation reaction in a mammalian alpha-amylase: high-resolution structural analysis of an enzyme-inhibitor complex. Biochemistry 40, 7700-7709.
-
(2001)
Biochemistry
, vol.40
, pp. 7700-7709
-
-
Qian, M.1
Nahoum, V.2
Bonicel, J.3
Bischoff, H.4
Henrissat, B.5
Payan, F.6
-
39
-
-
0037007004
-
Cristallographic evidence of a transglycosylation reaction: Ternary complexes of a psychrophilic alpha-amylase
-
Aghajari, N., Roth, M. & Haser, R. (2002) Cristallographic evidence of a transglycosylation reaction: ternary complexes of a psychrophilic alpha-amylase. Biochemistry 41, 4273-4280.
-
(2002)
Biochemistry
, vol.41
, pp. 4273-4280
-
-
Aghajari, N.1
Roth, M.2
Haser, R.3
-
40
-
-
0037474545
-
Probing the role of a mobile loop in substrate binding and enzyme activity of human salivary amylase
-
Ramasubbu, N., Ragunath, C. & Mishra, P.J. (2003) Probing the role of a mobile loop in substrate binding and enzyme activity of human salivary amylase. J. Mol. Biol. 325, 1061-1076.
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 1061-1076
-
-
Ramasubbu, N.1
Ragunath, C.2
Mishra, P.J.3
-
41
-
-
0346422352
-
Introducing transglycosylation activity into human salivary alpha-amylase (HSA)
-
Remenyik, J., Ragunath, C., Ramasubbu, N., Gyemant, G., Liptak, A. & Kandra, L. (2003) Introducing transglycosylation activity into human salivary alpha-amylase (HSA). Org. Lett. 5, 4895-4898.
-
(2003)
Org. Lett.
, vol.5
, pp. 4895-4898
-
-
Remenyik, J.1
Ragunath, C.2
Ramasubbu, N.3
Gyemant, G.4
Liptak, A.5
Kandra, L.6
-
42
-
-
0036439021
-
Barley alpha-amylase Met53 situated at the high-affinity subsite-2 belongs to a substrate binding motif in the beta → alpha loop 2 of the catalytic (beta/alpha) 8-barrel and is critical for activity and substrate specificity
-
Mori, H., Bak-Jensen, K.S. & Svensson, B. (2002) Barley alpha-amylase Met53 situated at the high-affinity subsite-2 belongs to a substrate binding motif in the beta → alpha loop 2 of the catalytic (beta/alpha) 8-barrel and is critical for activity and substrate specificity. Eur. J. Biochem. 269, 5377-5390.
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 5377-5390
-
-
Mori, H.1
Bak-Jensen, K.S.2
Svensson, B.3
-
43
-
-
0026589137
-
Multifunctional roles of a histidine residue in human pancreatic alpha-amylase
-
Ishikawa, K., Matsui, I., Honda, K. & Nakatani, H. (1992) Multifunctional roles of a histidine residue in human pancreatic alpha-amylase. Biochem. Biophys. Res. Commun. 183, 286-291.
-
(1992)
Biochem. Biophys. Res. Commun.
, vol.183
, pp. 286-291
-
-
Ishikawa, K.1
Matsui, I.2
Honda, K.3
Nakatani, H.4
-
44
-
-
0032978339
-
Cloning, mutagenesis, and structural analysis of human pancreatic alpha-amylase expressed in Pichia pastoris
-
Rydberg, E.H., Sidhu, G., Vo, H.C., Hewitt, J., Cote, H.C., Wang, Y., Numao, S., MacGillivray, R.T., Overall, C.M., Brayer, G.D. & Withers, S.G. (1999) Cloning, mutagenesis, and structural analysis of human pancreatic alpha-amylase expressed in Pichia pastoris. Protein Sci. 8, 635-643.
-
(1999)
Protein Sci.
, vol.8
, pp. 635-643
-
-
Rydberg, E.H.1
Sidhu, G.2
Vo, H.C.3
Hewitt, J.4
Cote, H.C.5
Wang, Y.6
Numao, S.7
MacGillivray, R.T.8
Overall, C.M.9
Brayer, G.D.10
Withers, S.G.11
-
45
-
-
0029944196
-
Invariant glycines and prolines flanking in loops the strand beta 2 of various (alpha/beta) 8-barrel enzymes: A hidden homology?
-
Janecek, S. (1996) Invariant glycines and prolines flanking in loops the strand beta 2 of various (alpha/beta) 8-barrel enzymes: a hidden homology? Protein Sci. 5, 1136-1143.
-
(1996)
Protein Sci.
, vol.5
, pp. 1136-1143
-
-
Janecek, S.1
-
46
-
-
0030760550
-
Structure of the Aspergillus oryzae alpha-amylase complexed with the inhibitor acarbose at 2.0 Angstrom resolution
-
Brzozowski, A.M. & Davies, G.J. (1997) Structure of the Aspergillus oryzae alpha-amylase complexed with the inhibitor acarbose at 2.0 Angstrom resolution. Biochemistry 36, 10837-10845.
-
(1997)
Biochemistry
, vol.36
, pp. 10837-10845
-
-
Brzozowski, A.M.1
Davies, G.J.2
-
47
-
-
0031910806
-
Crystal structures of the psychrophilic alpha-amylase from Alteromonas haloplanctis in its native form and complexed with an inhibitor
-
Aghajari, N., Feller, G., Gerday, C. & Haser, R. (1998) Crystal structures of the psychrophilic alpha-amylase from Alteromonas haloplanctis in its native form and complexed with an inhibitor. Protein Sci. 7, 564-572.
-
(1998)
Protein Sci.
, vol.7
, pp. 564-572
-
-
Aghajari, N.1
Feller, G.2
Gerday, C.3
Haser, R.4
-
48
-
-
0027609916
-
SETOR: Hardware-lighted three-dimensional solid model representations of macromolecules
-
Evans, S.V. (1993) SETOR: hardware-lighted three-dimensional solid model representations of macromolecules. J. Mol. Graph. 11, 127-128.
-
(1993)
J. Mol. Graph.
, vol.11
, pp. 127-128
-
-
Evans, S.V.1
|