-
2
-
-
24744434584
-
Dynamics-based amplification of RNA function and Its characterization by using NMR spectroscopy
-
Al-Hashimi HM. Dynamics-based amplification of RNA function and Its characterization by using NMR spectroscopy. ChemBioChem 2005, 6:1506-1519.
-
(2005)
ChemBioChem
, vol.6
, pp. 1506-1519
-
-
Al-Hashimi, H.M.1
-
3
-
-
60149103676
-
The centrality of RNA
-
Sharp PA. The centrality of RNA. Cell 2009, 136: 577-580.
-
(2009)
Cell
, vol.136
, pp. 577-580
-
-
Sharp, P.A.1
-
4
-
-
0035838382
-
Current topics in RNA-protein recognition: control of specificity and biological function through induced fit and conformational capture
-
Leulliot N, Varani G. Current topics in RNA-protein recognition: control of specificity and biological function through induced fit and conformational capture. Biochemistry 2001, 40:7947-7956.
-
(2001)
Biochemistry
, vol.40
, pp. 7947-7956
-
-
Leulliot, N.1
Varani, G.2
-
5
-
-
31944446215
-
Resolving the motional modes that code for RNA adaption
-
Zhang Q, Sun X, Watt ED, Al-Hashimi HM. Resolving the motional modes that code for RNA adaption. Science 2006, 311:653-656.
-
(2006)
Science
, vol.311
, pp. 653-656
-
-
Zhang, Q.1
Sun, X.2
Watt, E.D.3
Al-Hashimi, H.M.4
-
6
-
-
2942715028
-
Analysis of global conformational transitions in ribozymes.
-
ed., Totowa: Humana Press
-
Lilley DMJ. Analysis of global conformational transitions in ribozymes. In: Sioud M, ed. Ribozymes and siRNA Protocols, vol 252: Totowa: Humana Press; 2004, 77-108.
-
(2004)
Ribozymes and siRNA Protocols
, vol.252
, pp. 77-108
-
-
Lilley, D.M.J.1
Sioud, M.2
-
7
-
-
77952700860
-
-
Real-time multidimensional NMR follows RNA folding with second resolution. Proceedings of the National Academy of Sciences
-
Lee M-K, Gal M, Frydman L, Varani G. Real-time multidimensional NMR follows RNA folding with second resolution. Proceedings of the National Academy of Sciences; 2010.
-
(2010)
-
-
Lee, M.-K.1
Gal, M.2
Frydman, L.3
Varani, G.4
-
8
-
-
84865482636
-
Biomolecular NMR Spectroscopy.
-
eds The Netherlands: IOS Press
-
Bardaro MF Jr, Pederson K, Drobny G, Varani G. Biomolecular NMR Spectroscopy. In: Andrew J, Dingley SMP, eds. Advances in Biomedical Spectroscopy, vol 3. The Netherlands: IOS Press; 2011, 279-301.
-
(2011)
Advances in Biomedical Spectroscopy
, vol.3
, pp. 279-301
-
-
Bardaro, M.F.1
Pederson, K.2
Drobny, G.3
Varani, G.4
Andrew, J.5
Dingley, S.M.P.6
-
9
-
-
63249089973
-
How binding of small molecule and peptide ligands to HIV-1 TAR alters the RNA motional landscape
-
Bardaro MF Jr, Shajani Z, Patora-Komisarska K, Robinson JA, Varani G. How binding of small molecule and peptide ligands to HIV-1 TAR alters the RNA motional landscape. Nucleic Acids Res 2009, 37:1529-1540.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1529-1540
-
-
Bardaro, M.F.1
Shajani, Z.2
Patora-Komisarska, K.3
Robinson, J.A.4
Varani, G.5
-
10
-
-
19444373245
-
13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein
-
Shajani Z, Varani G. 13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein. J Mol Biol 2005, 349:699-715.
-
(2005)
J Mol Biol
, vol.349
, pp. 699-715
-
-
Shajani, Z.1
Varani, G.2
-
12
-
-
47649130629
-
13C relaxation studies of the DNA target sequence for HhaI methyltransferaase reveal unique motional properties
-
Shajani Z, Varani G. 13C relaxation studies of the DNA target sequence for HhaI methyltransferaase reveal unique motional properties. Biochemistry 2008, 47:7617-7625.
-
(2008)
Biochemistry
, vol.47
, pp. 7617-7625
-
-
Shajani, Z.1
Varani, G.2
-
13
-
-
34249078827
-
Binding of U1A protein changes RNA dynamics as observed by 13C NMR relaxation studies.
-
Shajani Z, Varani G. Binding of U1A protein changes RNA dynamics as observed by 13C NMR relaxation studies. Biochemistry 2007, 46:5875-5883.
-
(2007)
Biochemistry
, vol.46
, pp. 5875-5883
-
-
Shajani, Z.1
Varani, G.2
-
15
-
-
0034984208
-
NMR probes of molecular dynamics: overview and comparison with other techniques
-
Palmer AG III. NMR probes of molecular dynamics: overview and comparison with other techniques. Annu Rev Biophys Biomol Struct 2001, 30:129-155.
-
(2001)
Annu Rev Biophys Biomol Struct
, vol.30
, pp. 129-155
-
-
Palmer, A.G.1
-
16
-
-
77954360115
-
Direct observation of the temperature-induced melting process of the Salmonella fourU RNA thermometer at base-pair resolution
-
Rinnenthal J, Klinkert B, Narberhaus F, Schwalbe H. Direct observation of the temperature-induced melting process of the Salmonella fourU RNA thermometer at base-pair resolution. Nucleic Acids Res 2010, 38:3834-3847.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 3834-3847
-
-
Rinnenthal, J.1
Klinkert, B.2
Narberhaus, F.3
Schwalbe, H.4
-
17
-
-
46949093335
-
Using relaxation disperson NMR spectroscopy to determine structures of excited, invisible protein states
-
Hansen AL, Vallurupalli P, Kay LE. Using relaxation disperson NMR spectroscopy to determine structures of excited, invisible protein states. J Biomol NMR 2008, 41:113-120.
-
(2008)
J Biomol NMR
, vol.41
, pp. 113-120
-
-
Hansen, A.L.1
Vallurupalli, P.2
Kay, L.E.3
-
18
-
-
66149129565
-
Relaxation dispersion NMR spectroscopy as a toll for detailed studies of protein folding
-
Neudecker P, Lundstrom P, Kay LE. Relaxation dispersion NMR spectroscopy as a toll for detailed studies of protein folding. Biophys J 2009, 96:2045-2054.
-
(2009)
Biophys J
, vol.96
, pp. 2045-2054
-
-
Neudecker, P.1
Lundstrom, P.2
Kay, L.E.3
-
19
-
-
0034664076
-
Active site dynamics in the lead-dependent ribozyme
-
Hoogstraten CG, Wank JR, Pardi A. Active site dynamics in the lead-dependent ribozyme. Biochemistry 2000, 39:9951-9958.
-
(2000)
Biochemistry
, vol.39
, pp. 9951-9958
-
-
Hoogstraten, C.G.1
Wank, J.R.2
Pardi, A.3
-
20
-
-
57549095175
-
Extensive backbone dynamics in the GCAA RNA tetraloop analyzed using 13C NMR spin relaxation and specific isotope labeling
-
Johnson JE, Hoogstraten CG. Extensive backbone dynamics in the GCAA RNA tetraloop analyzed using 13C NMR spin relaxation and specific isotope labeling. J Am Chem Soc 2008, 130:16757-16769.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 16757-16769
-
-
Johnson, J.E.1
Hoogstraten, C.G.2
-
21
-
-
79952177284
-
Transient Hoogsteen base pairs in canonical duplex DNA
-
Nikolova EN, Kim E, Wise AA, O'Brien PJ, Andricioaei I, Al-Hashimi HM. Transient Hoogsteen base pairs in canonical duplex DNA. Nature 2011, 470:498-502.
-
(2011)
Nature
, vol.470
, pp. 498-502
-
-
Nikolova, E.N.1
Kim, E.2
Wise, A.A.3
O'Brien, P.J.4
Andricioaei, I.5
Al-Hashimi, H.M.6
-
22
-
-
37549002149
-
RNA dynamics by carbon relaxation and domain elongation
-
Hansen AL, Al-Hashimi HM. RNA dynamics by carbon relaxation and domain elongation. J Am Chem Soc 2007, 129:16072-16082.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 16072-16082
-
-
Hansen, A.L.1
Al-Hashimi, H.M.2
-
23
-
-
0036290269
-
Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings
-
Al-Hashimi HM, Gosser Y, Gorin A, Hu W, Majumdar A, Patel DJ. Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings. J Mol Biol 2002, 315:95-102.
-
(2002)
J Mol Biol
, vol.315
, pp. 95-102
-
-
Al-Hashimi, H.M.1
Gosser, Y.2
Gorin, A.3
Hu, W.4
Majumdar, A.5
Patel, D.J.6
-
24
-
-
1842578995
-
Argininamide binding arrests global motions in HIV-1 TAR RNA: comparison with Mg+2-induced conformational stabilization
-
Pitt SW, Majumdar A, Serganov A, Patel DJ, Al-Hashimi HM. Argininamide binding arrests global motions in HIV-1 TAR RNA: comparison with Mg+2-induced conformational stabilization. J Mol Biol 2004, 338:7-16.
-
(2004)
J Mol Biol
, vol.338
, pp. 7-16
-
-
Pitt, S.W.1
Majumdar, A.2
Serganov, A.3
Patel, D.J.4
Al-Hashimi, H.M.5
-
25
-
-
37549017736
-
Visualizing spatially correlated dynamics that directs RNA conformational transitions
-
Zhang Q, Stelzer AC, Fisher CK, Al-Hashimi HM. Visualizing spatially correlated dynamics that directs RNA conformational transitions. Nature 2007, 450:1263-1268.
-
(2007)
Nature
, vol.450
, pp. 1263-1268
-
-
Zhang, Q.1
Stelzer, A.C.2
Fisher, C.K.3
Al-Hashimi, H.M.4
-
26
-
-
34547820982
-
NMR studies of RNA dynamics and structural plasticity using NMR residual dipolar couplings
-
Getz M, Sun X, Casiano-Negroni A, Zhang Q, Al-Hashimi HM. NMR studies of RNA dynamics and structural plasticity using NMR residual dipolar couplings. Biopolymers 2007, 86:384-402.
-
(2007)
Biopolymers
, vol.86
, pp. 384-402
-
-
Getz, M.1
Sun, X.2
Casiano-Negroni, A.3
Zhang, Q.4
Al-Hashimi, H.M.5
-
27
-
-
74849109067
-
Intermediate ate atomic trajectories of RNA by solid-state NMR spectroscopy
-
Olsen GL, Bardaro MF Jr, Echodu CD, Drobny GP, Varani G. Intermediate ate atomic trajectories of RNA by solid-state NMR spectroscopy. J Am Chem Soc 2010, 132:303-308.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 303-308
-
-
Olsen, G.L.1
Bardaro, M.F.2
Echodu, C.D.3
Drobny, G.P.4
Varani, G.5
-
28
-
-
41449114103
-
Solid-state deuterium NMR studies reveal micro-ns motions in the HIV-1 transactivation response RNA recognition site
-
Olsen GL, Echodu CD, Shajani Z, Bardaro MF Jr, Varani G, Drobny GP. Solid-state deuterium NMR studies reveal micro-ns motions in the HIV-1 transactivation response RNA recognition site. J Am Chem Soc 2008, 10:2896-2897.
-
(2008)
J Am Chem Soc
, vol.10
, pp. 2896-2897
-
-
Olsen, G.L.1
Echodu, C.D.2
Shajani, Z.3
Bardaro, M.F.4
Varani, G.5
Drobny, G.P.6
-
29
-
-
69249231036
-
Hydration dependent dynamics in RNA
-
Olsen GL Bardaro M Jr, Echodu CD, Drobny GP, Varani G. Hydration dependent dynamics in RNA. J Biomol NMR 2009, 45:133-142.
-
(2009)
J Biomol NMR
, vol.45
, pp. 133-142
-
-
Olsen, G.L.1
Bardaro, M.2
Echodu, C.D.3
Drobny, G.P.4
Varani, G.5
-
30
-
-
84865472991
-
-
Unifying solution and solid-state NMR studies of nucleic acid dynamics. Encyclopedia of Magnetic Resonance doi:10.1002/9780470034590.emrstm1173.
-
Pederson K, Echodu CD, Emani P, Olsen GL, Bardaro MF Jr, Shajani Z, Meints GA, Miller P, Varani G, Drobny GP. Unifying solution and solid-state NMR studies of nucleic acid dynamics. Encyclopedia of Magnetic Resonance 2010. doi:10.1002/9780470034590.emrstm1173.
-
(2010)
-
-
Pederson, K.1
Echodu, C.D.2
Emani, P.3
Olsen, G.L.4
Bardaro, M.F.5
Shajani, Z.6
Meints, G.A.7
Miller, P.8
Varani, G.9
Drobny, G.P.10
-
31
-
-
0042868578
-
Principles and features of single-scan two-dimensional NMR spectroscopy
-
Frydman L, Lupulescu A, Scherf T. Principles and features of single-scan two-dimensional NMR spectroscopy. J Am Chem Soc 2003, 125:9204-9217.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 9204-9217
-
-
Frydman, L.1
Lupulescu, A.2
Scherf, T.3
-
32
-
-
18744411499
-
The acquisition of multidimensional NMR spectra within a single scan
-
Frydman L, Scherf T, Lupulescu A. The acquisition of multidimensional NMR spectra within a single scan. Proc Natl Acad Sci U S A 2002, 99:15958-15962.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 15958-15962
-
-
Frydman, L.1
Scherf, T.2
Lupulescu, A.3
-
33
-
-
33846785314
-
UltraSOFAST HMQC NMR and the repetitive acquisition of 2D protein spectra at Hz rates
-
Gal M, Schanda P, Brutscher B, Frydman L. UltraSOFAST HMQC NMR and the repetitive acquisition of 2D protein spectra at Hz rates. J Am Chem Soc 2007, 129:1372-1377.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 1372-1377
-
-
Gal, M.1
Schanda, P.2
Brutscher, B.3
Frydman, L.4
-
34
-
-
31444443367
-
Real-time monitoring of chemical transformations by ultrafast 2D NMR spectroscopy
-
Gal M, Mishkovsky M, Frydman F. Real-time monitoring of chemical transformations by ultrafast 2D NMR spectroscopy. J Am Chem Soc 2006, 128:951-956.
-
(2006)
J Am Chem Soc
, vol.128
, pp. 951-956
-
-
Gal, M.1
Mishkovsky, M.2
Frydman, F.3
-
35
-
-
67651027584
-
Principles and progress in ultrafast multidimensional nuclear magnetic resonance
-
Mishkovsky M, Frydman L. Principles and progress in ultrafast multidimensional nuclear magnetic resonance. Annu Rev Phys Chem 2009, 60:429-448.
-
(2009)
Annu Rev Phys Chem
, vol.60
, pp. 429-448
-
-
Mishkovsky, M.1
Frydman, L.2
-
36
-
-
0032727991
-
Themes in RNA-protein recognition
-
Draper DE. Themes in RNA-protein recognition. J Mol Biol 1999, 293:255-270.
-
(1999)
J Mol Biol
, vol.293
, pp. 255-270
-
-
Draper, D.E.1
-
37
-
-
0033784534
-
Induced-fit in RNA-protein recognition
-
Williamson JR. Induced-fit in RNA-protein recognition. Nat Struct Biol 2000, 7:834-837.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 834-837
-
-
Williamson, J.R.1
-
38
-
-
0037381618
-
RNA sensors and riboswitches: self-regulating messages
-
Lai EC. RNA sensors and riboswitches: self-regulating messages. Curr Biol 2003, 13:R285-R291.
-
(2003)
Curr Biol
, vol.13
-
-
Lai, E.C.1
-
40
-
-
7244254183
-
Dynamics in the U6 RNA intramolecular stem-loop: a base flipping conformational change
-
Reiter NJ, Blad H, Abildgaard F, Butcher SE. Dynamics in the U6 RNA intramolecular stem-loop: a base flipping conformational change. Biochemistry 2004, 43:13739-13747.
-
(2004)
Biochemistry
, vol.43
, pp. 13739-13747
-
-
Reiter, N.J.1
Blad, H.2
Abildgaard, F.3
Butcher, S.E.4
-
41
-
-
0030755124
-
Structural basis of the RNA-binding specificity of human U1A protein
-
Allain FH, Howe PW, Neuhaus D, Varani G. Structural basis of the RNA-binding specificity of human U1A protein. EMBO J 1997, 16:5764-5772.
-
(1997)
EMBO J
, vol.16
, pp. 5764-5772
-
-
Allain, F.H.1
Howe, P.W.2
Neuhaus, D.3
Varani, G.4
-
42
-
-
32244447225
-
Shape-specific recognition in the structure of the Vts1p SAM domain with RNA
-
Oberstrass FC, Lee A, Stefl R, Janis M, Chanfreau G, Allain FHT. Shape-specific recognition in the structure of the Vts1p SAM domain with RNA. Nat Struct Mol Biol 2006, 13:160-167.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 160-167
-
-
Oberstrass, F.C.1
Lee, A.2
Stefl, R.3
Janis, M.4
Chanfreau, G.5
Allain, F.H.T.6
-
44
-
-
0004936175
-
Recognition of HIV-1 TAR RNA by Tat protein and Tat-derived peptides
-
Aboul-ela F, Varani G. Recognition of HIV-1 TAR RNA by Tat protein and Tat-derived peptides. J Mol Struct 1998, 423:29-39.
-
(1998)
J Mol Struct
, vol.423
, pp. 29-39
-
-
Aboul-ela, F.1
Varani, G.2
-
45
-
-
0032701796
-
Tackling Tat
-
Karn J. Tackling Tat. J Mol Biol 1999, 293:235-254.
-
(1999)
J Mol Biol
, vol.293
, pp. 235-254
-
-
Karn, J.1
-
46
-
-
0010042341
-
-
West Sussex, England: John Wiley and Sons
-
Levitt MH. Spin Dynamics. West Sussex, England: John Wiley and Sons; 2001.
-
(2001)
Spin Dynamics.
-
-
Levitt, M.H.1
-
47
-
-
33845553743
-
Model-free approach to the interpretation on nuclear magnetic relaxation in macromolecules. 2. Analysis of experimental results.
-
Lipari G, Szabo A. Model-free approach to the interpretation on nuclear magnetic relaxation in macromolecules. 2. Analysis of experimental results. J Am Chem Soc 1982, 104:4559-4570.
-
(1982)
J Am Chem Soc
, vol.104
, pp. 4559-4570
-
-
Lipari, G.1
Szabo, A.2
-
48
-
-
33646719091
-
Model-free approach to the interpretation on nuclear magnetic relaxation in macromolecules. 1. Theory and range of validity.
-
Lipari G, Szabo A. Model-free approach to the interpretation on nuclear magnetic relaxation in macromolecules. 1. Theory and range of validity. J Am Chem Soc 1982, 104:4546-4559.
-
(1982)
J Am Chem Soc
, vol.104
, pp. 4546-4559
-
-
Lipari, G.1
Szabo, A.2
-
49
-
-
0030217514
-
Nuclear magnetic resonance studies of biopolymer dynamics
-
Palmer AG III, Williams J, McDermott A. Nuclear magnetic resonance studies of biopolymer dynamics. J Phys Chem 1996, 100:13293-13310.
-
(1996)
J Phys Chem
, vol.100
, pp. 13293-13310
-
-
Palmer, A.G.1
Williams, J.2
McDermott, A.3
-
50
-
-
51749105637
-
Changes in dynamics of SRE-RNA on binding to the VTS1p-SAM domain studied by 13C NMR relaxation
-
Oberstrass FC, Allain FHT, Ravindranathan S. Changes in dynamics of SRE-RNA on binding to the VTS1p-SAM domain studied by 13C NMR relaxation. J Am Chem Soc 2008, 130:12007-12020.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 12007-12020
-
-
Oberstrass, F.C.1
Allain, F.H.T.2
Ravindranathan, S.3
-
51
-
-
34447294846
-
iRED analysis of TAR RNA reveals motional coupling, long-range correlations and a dynamical hinge
-
Musselman C, Al-Hashimi HM, Andricioaei I. iRED analysis of TAR RNA reveals motional coupling, long-range correlations and a dynamical hinge. Biophys J 2007, 93:411-422.
-
(2007)
Biophys J
, vol.93
, pp. 411-422
-
-
Musselman, C.1
Al-Hashimi, H.M.2
Andricioaei, I.3
-
52
-
-
56049118219
-
Characterizing complex dynamics in the TAR apical loop and motional correlations with the bulge by NMR, MD and mutagenesis
-
Dethoff EA, Hansen AL, Musselman C, Watt ED, Andricioaei I, Al-Hashimi HM. Characterizing complex dynamics in the TAR apical loop and motional correlations with the bulge by NMR, MD and mutagenesis. Biophys J 2008, 95:3906-3915.
-
(2008)
Biophys J
, vol.95
, pp. 3906-3915
-
-
Dethoff, E.A.1
Hansen, A.L.2
Musselman, C.3
Watt, E.D.4
Andricioaei, I.5
Al-Hashimi, H.M.6
-
53
-
-
74249115345
-
Topology links RNA secondary structure with global conformation, dynamics, and adaptation
-
Bailor MH, Sun X, Al-Hashimi HM. Topology links RNA secondary structure with global conformation, dynamics, and adaptation. Science 2010, 327:202-206.
-
(2010)
Science
, vol.327
, pp. 202-206
-
-
Bailor, M.H.1
Sun, X.2
Al-Hashimi, H.M.3
-
54
-
-
0037436349
-
Structure of the intact stem and bulge of HIV-1 [Psi]-RNA stem-loop SL1
-
Lawrence DC, Stover CC, Noznitsky J, Wu Z, Summers MF. Structure of the intact stem and bulge of HIV-1 [Psi]-RNA stem-loop SL1. J Mol Biol 2003, 326:529-542.
-
(2003)
J Mol Biol
, vol.326
, pp. 529-542
-
-
Lawrence, D.C.1
Stover, C.C.2
Noznitsky, J.3
Wu, Z.4
Summers, M.F.5
-
55
-
-
0038206733
-
+2-induced variations in the conformation and dynamics of HIV-1 TAR RNA probed using NMR residual dipolar couplings
-
+2-induced variations in the conformation and dynamics of HIV-1 TAR RNA probed using NMR residual dipolar couplings. J Mol Biol 2003, 329:867-873.
-
(2003)
J Mol Biol
, vol.329
, pp. 867-873
-
-
Al-Hashimi, H.M.1
Pitt, S.W.2
Majumdar, A.3
Xu, W.4
Patel, D.J.5
-
56
-
-
14844353335
-
Recent progress in the study of biomolecular structure and dynamics in solution from residual dipolar couplings.
-
Blackledge M. Recent progress in the study of biomolecular structure and dynamics in solution from residual dipolar couplings. Prog iNucl Magn Reson Spectrosc 2005, 46:23-61.
-
(2005)
Prog iNucl Magn Reson Spectrosc
, vol.46
, pp. 23-61
-
-
Blackledge, M.1
-
57
-
-
0032174883
-
Characterization of magnetically oriented phospholipids micelles for measurement of dipolar couplings in macromolecules.
-
Ottiger M, Bax A. Characterization of magnetically oriented phospholipids micelles for measurement of dipolar couplings in macromolecules. J Bio Mol NMR 1998, 12:361-372.
-
(1998)
J Bio Mol NMR
, vol.12
, pp. 361-372
-
-
Ottiger, M.1
Bax, A.2
-
58
-
-
25444532318
-
Identification of slow correlated motions in proteins using residual dipolar and hydrogen-bond scalar couplings
-
Bouvignies G, Bernado P, Meier S, Cho K, Grzesiek S, Bruschweiler R, Blackledge M. Identification of slow correlated motions in proteins using residual dipolar and hydrogen-bond scalar couplings. Proc Natl Acad Sci U S A 2005, 102:13885-13890.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 13885-13890
-
-
Bouvignies, G.1
Bernado, P.2
Meier, S.3
Cho, K.4
Grzesiek, S.5
Bruschweiler, R.6
Blackledge, M.7
-
59
-
-
40549108626
-
Characterization of protein dynamics from residual dipolar couplings using the three dimensional Gaussian axial fluctuation model
-
Bouvignies G, Markwick PRL, Blackledge M. Characterization of protein dynamics from residual dipolar couplings using the three dimensional Gaussian axial fluctuation model. Proteins 2008, 71:353-363.
-
(2008)
Proteins
, vol.71
, pp. 353-363
-
-
Bouvignies, G.1
Markwick, P.R.L.2
Blackledge, M.3
-
60
-
-
14844363428
-
Protein backbone dynamcs from N-H dipolar couplings in partially aligned systems: a comparison of motional models in the presences of structural noise
-
Bouvignies G, Bernadó P, Blackledge M. Protein backbone dynamcs from N-H dipolar couplings in partially aligned systems: a comparison of motional models in the presences of structural noise. J Magn Reson 2005, 173:328-338.
-
(2005)
J Magn Reson
, vol.173
, pp. 328-338
-
-
Bouvignies, G.1
Bernadó, P.2
Blackledge, M.3
-
61
-
-
1842862935
-
Anisotropic small amplitude peptide plane dynamics in proteins from residual dipolar couplings
-
Bernado P, Blackledge M. Anisotropic small amplitude peptide plane dynamics in proteins from residual dipolar couplings. J Am Chem Soc 2004, 126:4907-4920.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 4907-4920
-
-
Bernado, P.1
Blackledge, M.2
-
62
-
-
33645469988
-
A thorough dynamic interpretation of residual dipolar couplings in uniquitin
-
Lakomek NA, Carlomagno T, Becker S, Griesinger C, Meiler J. A thorough dynamic interpretation of residual dipolar couplings in uniquitin. J Biomol NMR 2006, 34:101-115.
-
(2006)
J Biomol NMR
, vol.34
, pp. 101-115
-
-
Lakomek, N.A.1
Carlomagno, T.2
Becker, S.3
Griesinger, C.4
Meiler, J.5
-
63
-
-
38349001213
-
Comparison of alignment tensors generated for native tRNAVal using magnetic fields and liquid crystalline media
-
Latham MP, Hanson P, Brown DJ, Pardi A. Comparison of alignment tensors generated for native tRNAVal using magnetic fields and liquid crystalline media. J Biomol NMR 2008, 40:83-94.
-
(2008)
J Biomol NMR
, vol.40
, pp. 83-94
-
-
Latham, M.P.1
Hanson, P.2
Brown, D.J.3
Pardi, A.4
-
64
-
-
79951552152
-
Residual dipolar couplings: are multiple independent alignments always possible?
-
Higman VA, Boyd J, Smith LJ, Redfield C. Residual dipolar couplings: are multiple independent alignments always possible? J Biomol NMR 2011, 49:53-60.
-
(2011)
J Biomol NMR
, vol.49
, pp. 53-60
-
-
Higman, V.A.1
Boyd, J.2
Smith, L.J.3
Redfield, C.4
-
65
-
-
0028864394
-
The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein
-
Aboul-ela F, Karn J, Varani G. The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein. J Mol Biol 1995, 253:313-332.
-
(1995)
J Mol Biol
, vol.253
, pp. 313-332
-
-
Aboul-ela, F.1
Karn, J.2
Varani, G.3
-
66
-
-
0026651395
-
Conformation of the TAR RNA-arginine complex by NMR spectroscopy
-
Puglisi JD, Tan R, Calnan BJ, Frankel AD, Williamson JR. Conformation of the TAR RNA-arginine complex by NMR spectroscopy. Science 1992, 257:76-80.
-
(1992)
Science
, vol.257
, pp. 76-80
-
-
Puglisi, J.D.1
Tan, R.2
Calnan, B.J.3
Frankel, A.D.4
Williamson, J.R.5
-
67
-
-
67749088605
-
Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimics of Tat protein
-
Davidson A, Leeper T, Athanassiou Z, Patora K, Karn J, Robinson J, Varani G. Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimics of Tat protein. Proc Natl Acad Sci U S A 2009, 106:11931-11936.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 11931-11936
-
-
Davidson, A.1
Leeper, T.2
Athanassiou, Z.3
Patora, K.4
Karn, J.5
Robinson, J.6
Varani, G.7
-
68
-
-
77953988017
-
High-resolution studies of uniformly 13C,15N-labeled RNA by solid-state NMR spectroscopy
-
Cherepanov AV, Glaubitz C, Schwalbe H. High-resolution studies of uniformly 13C, 15N-labeled RNA by solid-state NMR spectroscopy. Angewandte Chemie International Edition 2010, 49:4747-4750.
-
(2010)
Angewandte Chemie International Edition
, vol.49
, pp. 4747-4750
-
-
Cherepanov, A.V.1
Glaubitz, C.2
Schwalbe, H.3
-
69
-
-
20444428018
-
Evidence that electrostatic interactions dictate the ligand-induced arrest of rna global flexibility
-
Pitt SW, Zhang Q, Patel DJ, Al-Hashimi HM. Evidence that electrostatic interactions dictate the ligand-induced arrest of rna global flexibility. Angewandte Chemie International Edition 2005, 44:3412-3415.
-
(2005)
Angewandte Chemie International Edition
, vol.44
, pp. 3412-3415
-
-
Pitt, S.W.1
Zhang, Q.2
Patel, D.J.3
Al-Hashimi, H.M.4
-
70
-
-
79960361918
-
A small molecule probe induces a conformation in HIV TAR RNA capable of binding drug-like fragments
-
Davidson A, Begley DW, Lau C, Varani G. A small molecule probe induces a conformation in HIV TAR RNA capable of binding drug-like fragments. J Mol Biol 2011, 410:984-996.
-
(2011)
J Mol Biol
, vol.410
, pp. 984-996
-
-
Davidson, A.1
Begley, D.W.2
Lau, C.3
Varani, G.4
-
71
-
-
35648974802
-
Time-resolved NMR methods resolving ligand-induced RNA folding at atomic resolution
-
Buck J, Fürtig B, Noeske J, Wöhnert J, Schwalbe H. Time-resolved NMR methods resolving ligand-induced RNA folding at atomic resolution. Proc Natl Acad Sci 2007, 104:15699-15704.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 15699-15704
-
-
Buck, J.1
Fürtig, B.2
Noeske, J.3
Wöhnert, J.4
Schwalbe, H.5
-
72
-
-
33646768226
-
Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain
-
Gilbert SD, Stoddard CD, Wise SJ, Batey RT. Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain. J Mol Biol 2006, 359:754-768.
-
(2006)
J Mol Biol
, vol.359
, pp. 754-768
-
-
Gilbert, S.D.1
Stoddard, C.D.2
Wise, S.J.3
Batey, R.T.4
-
74
-
-
38849204944
-
Direct observation of hierarchical folding in single riboswitch aptamers
-
Greenleaf WJ, Frieda KL, Foster DAN, Woodside MT, Block SM. Direct observation of hierarchical folding in single riboswitch aptamers. Science 2008, 319:630-633.
-
(2008)
Science
, vol.319
, pp. 630-633
-
-
Greenleaf, W.J.1
Frieda, K.L.2
Foster, D.A.N.3
Woodside, M.T.4
Block, S.M.5
-
75
-
-
26444620938
-
The kinetics of ligand binding by an adenine-sensing riboswitch
-
Wickiser JK, Cheah MT, Breaker RR, Crothers DM. The kinetics of ligand binding by an adenine-sensing riboswitch. Biochemistry 2005, 44:13404-13414.
-
(2005)
Biochemistry
, vol.44
, pp. 13404-13414
-
-
Wickiser, J.K.1
Cheah, M.T.2
Breaker, R.R.3
Crothers, D.M.4
-
76
-
-
15944382675
-
The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch
-
Wickiser JK, Winkler WC, Breaker RR, Crothers DM. The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch. Mol Cell 2005, 18:49-60.
-
(2005)
Mol Cell
, vol.18
, pp. 49-60
-
-
Wickiser, J.K.1
Winkler, W.C.2
Breaker, R.R.3
Crothers, D.M.4
-
77
-
-
77955498721
-
Using NMR chemical shifts as structural restraints in molecular dynamics simulations of proteins
-
Robustelli P, Kohlhoff K, Cavalli A, Vendruscolo M. Using NMR chemical shifts as structural restraints in molecular dynamics simulations of proteins. Structure 2010, 18:923-933.
-
(2010)
Structure
, vol.18
, pp. 923-933
-
-
Robustelli, P.1
Kohlhoff, K.2
Cavalli, A.3
Vendruscolo, M.4
|